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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145360 (27 seq.)
>w017068
AAQV01000074
Bacillota
Alkaliphilus oremlandii OhILAs [AAQV]
1717
1639
-
Asp
GTC
[ENA]
¡û
>w017058
AAQV01000071
Bacillota
Alkaliphilus oremlandii OhILAs [AAQV]
1441
1368
-
Asp
GTC
[ENA]
¡û
>w017042
AAQV01000071
Bacillota
Alkaliphilus oremlandii OhILAs [AAQV]
2913
2835
-
Asp
GTC
[ENA]
¡û
>w017032
AAQV01000054
Bacillota
Alkaliphilus oremlandii OhILAs [AAQV]
7099
7021
-
Asp
GTC
[ENA]
¡û
>WENV180240690
OBDD01060192
[OBDD] human gut metagenome; human gut
146
222
+
Asp
GTC
[ENA]
¢þ
>WENV180544171
OCIP01008640
[OCIP] human gut metagenome; human gut
881
957
+
Asp
GTC
[ENA]
¢þ
>WENV180623350
OCQE01017032
[OCQE] human gut metagenome; human gut
361
437
+
Asp
GTC
[ENA]
¢þ
>WENV180651219
OCSZ01088335
[OCSZ] human gut metagenome; human gut
154
78
-
Asp
GTC
[ENA]
¢þ
>WENV180659512
OCVV010865256
[OCVV] gut metagenome; gut
103
27
-
Asp
GTC
[ENA]
¢þ
>WENV180659514
OCVV010865256
[OCVV] gut metagenome; gut
103
27
-
Asp
GTC
[ENA]
¢þ
>WENV181865038
OGWU01006639
[OGWU] human gut metagenome; faeces
3810
3886
+
Asp
GTC
[ENA]
¢þ
>WENV182148194
OHLE01018766
[OHLE] human gut metagenome; feces
87
11
-
Asp
GTC
[ENA]
¢þ
>C08000737
CP000853
Bacillota
Alkaliphilus oremlandii OhILAs [CP000853]
2612265
2612192
-
Asp
GTC
[Ensembl]
¡û
>C08000753
CP000853
Bacillota
Alkaliphilus oremlandii OhILAs [CP000853]
2610794
2610721
-
Asp
GTC
[Ensembl]
¡û
>C08000764
CP000853
Bacillota
Alkaliphilus oremlandii OhILAs [CP000853]
2604471
2604398
-
Asp
GTC
[Ensembl]
¡û
>C08000786
CP000853
Bacillota
Alkaliphilus oremlandii OhILAs [CP000853]
1923894
1923821
-
Asp
GTC
[Ensembl]
¡û
>WENV182748307
OJQW01005536
[OJQW] human gut metagenome; stool sample
2320
2396
+
Asp
GTC
[ENA]
¢þ
>WENV182748327
OJQW01006198
[OJQW] human gut metagenome; stool sample
1322
1246
-
Asp
GTC
[ENA]
¢þ
>WENV183759721
PPYE01210706
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
829
905
+
Asp
GTC
[ENA]
¢þ
>C151024050
CP007452
Bacillota
Peptoclostridium acidaminophilum DSM 3953 [CP007452]
53841
53917
+
Asp
GTC
[Ensembl]
¡û
>C151024074
CP007452
Bacillota
Peptoclostridium acidaminophilum DSM 3953 [CP007452]
193599
193675
+
Asp
GTC
[Ensembl]
¡û
>C151024097
CP007452
Bacillota
Peptoclostridium acidaminophilum DSM 3953 [CP007452]
1861390
1861314
-
Asp
GTC
[Ensembl]
¡û
>C11106350
FP565809
Bacillota
Acetoanaerobium sticklandii DSM 519 [FP565809]
568063
568139
+
Asp
GTC
[Ensembl]
¡û
>C11106370
FP565809
Bacillota
Acetoanaerobium sticklandii DSM 519 [FP565809]
574892
574968
+
Asp
GTC
[Ensembl]
¡û
>C11106388
FP565809
Bacillota
Acetoanaerobium sticklandii DSM 519 [FP565809]
2510093
2510017
-
Asp
GTC
[Ensembl]
¡û
>W1710602781
FUYN01000010
Bacillota
Acetoanaerobium noterae [FUYN]
41217
41141
-
Asp
GTC
[ENA]
¡û
>W1710602796
FUYN01000011
Bacillota
Acetoanaerobium noterae [FUYN]
90
166
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK