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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145365 (99 seq.)
>W1711018989
LQXJ01000034
Gammaproteobacteria
Marinobacter sp. C18 [LQXJ]
101012
101088
+
Val
GAC
[ENA]
¡û
>W1711078038
LSMM01000022
Gammaproteobacteria
Marinobacter sp. Hex_13 [LSMM]
48065
48141
+
Val
GAC
[ENA]
¡û
>W1711081197
LSRT01000443
Gammaproteobacteria
Marinobacter sp. T13-3 [LSRT]
1044
1120
+
Val
GAC
[ENA]
¡û
>W1711081205
LSRT01000654
Gammaproteobacteria
Marinobacter sp. T13-3 [LSRT]
1584
1660
+
Val
GAC
[ENA]
¡û
>W131166728
ARCR01000038
Gammaproteobacteria
Marinobacter gelidimuriae BF04_CF-4 [ARCR]
1091
1167
+
Val
GAC
[ENA]
¡û
>C171114834
CP020931
Gammaproteobacteria
Marinobacter salarius SMR5 [CP020931]
2066630
2066554
-
Val
GAC
-
¡û
>w027842
ABCP01000003
Gammaproteobacteria
Marinobacter algicola DG893 [ABCP]
34448
34370
-
Val
GAC
[ENA]
¡û
>w023543
AAXY01000014
Gammaproteobacteria
Marinobacter sp. ELB17 [AAXY]
68729
68805
+
Val
GAC
[ENA]
¡û
>WENV181321399
OFKM01000033
[OFKM] marine metagenome; sea ice
22331
22255
-
Val
GAC
[ENA]
¢þ
>WENV181322978
OFKW01000021
[OFKW] marine metagenome; sea ice
13099
13023
-
Val
GAC
[ENA]
¢þ
>WENV182541540
OJAU01000014
[OJAU] seawater metagenome; Sea water
141010
140934
-
Val
GAC
[ENA]
¢þ
>WENV182542461
OJAY01001801
[OJAY] seawater metagenome; Sea water
1301
1225
-
Val
GAC
[ENA]
¢þ
>WENV182542579
OJAZ01000015
[OJAZ] seawater metagenome; Sea water
101466
101542
+
Val
GAC
[ENA]
¢þ
>WENV182546169
OJBO01001734
[OJBO] seawater metagenome; Sea water
6965
7041
+
Val
GAC
[ENA]
¢þ
>WENV182546479
OJBP01000019
[OJBP] seawater metagenome; Sea water
101465
101541
+
Val
GAC
[ENA]
¢þ
>WENV182547299
OJBS01000163
[OJBS] seawater metagenome; Sea water
10027
9951
-
Val
GAC
[ENA]
¢þ
>WENV182547644
OJBT01000215
[OJBT] seawater metagenome; Sea water
10374
10298
-
Val
GAC
[ENA]
¢þ
>WENV182548892
OJBX01001101
[OJBX] seawater metagenome; Sea water
4034
3958
-
Val
GAC
[ENA]
¢þ
>WENV182548901
OJBX01001276
[OJBX] seawater metagenome; Sea water
2086
2162
+
Val
GAC
[ENA]
¢þ
>WENV182549427
OJBY01000894
[OJBY] seawater metagenome; Sea water
3977
3901
-
Val
GAC
[ENA]
¢þ
>WENV182549587
OJBY01002633
[OJBY] seawater metagenome; Sea water
2145
2221
+
Val
GAC
[ENA]
¢þ
>WENV182550931
OJCB01002034
[OJCB] seawater metagenome; Sea water
3988
3912
-
Val
GAC
[ENA]
¢þ
>WENV182550941
OJCB01002419
[OJCB] seawater metagenome; Sea water
3192
3116
-
Val
GAC
[ENA]
¢þ
>WENV182553386
OJCR01003046
[OJCR] seawater metagenome; Sea water
3235
3159
-
Val
GAC
[ENA]
¢þ
>WENV182553445
OJCR01005190
[OJCR] seawater metagenome; Sea water
2334
2258
-
Val
GAC
[ENA]
¢þ
>WENV182554962
OJCY01000171
[OJCY] seawater metagenome; Sea water
2025
2101
+
Val
GAC
[ENA]
¢þ
>WENV182557490
OJDK01000050
[OJDK] seawater metagenome; Sea water
55132
55208
+
Val
GAC
[ENA]
¢þ
>WENV182558712
OJDN01001200
[OJDN] seawater metagenome; Sea water
5049
5125
+
Val
GAC
[ENA]
¢þ
>WENV182559642
OJDQ01000690
[OJDQ] seawater metagenome; Sea water
1910
1834
-
Val
GAC
[ENA]
¢þ
>WENV182560311
OJDT01037036
[OJDT] seawater metagenome; Sea water
441
365
-
Val
GAC
[ENA]
¢þ
>WENV182561513
OJDW01000863
[OJDW] seawater metagenome; Sea water
79
3
-
Val
GAC
[ENA]
¢þ
>WENV182563985
OJED01012636
[OJED] seawater metagenome; Sea water
39
115
+
Val
GAC
[ENA]
¢þ
>WENV182567169
OJEN01008025
[OJEN] seawater metagenome; Sea water
1017
941
-
Val
GAC
[ENA]
¢þ
>WENV182567570
OJEO01008485
[OJEO] seawater metagenome; Sea water
1202
1278
+
Val
GAC
[ENA]
¢þ
>WENV182567745
OJEP01000121
[OJEP] seawater metagenome; Sea water
5652
5576
-
Val
GAC
[ENA]
¢þ
>WENV182568894
OJEX01000556
[OJEX] seawater metagenome; Sea water
4137
4061
-
Val
GAC
[ENA]
¢þ
>WENV182572204
OJFL01001129
[OJFL] seawater metagenome; Sea water
2306
2230
-
Val
GAC
[ENA]
¢þ
>WENV182573061
OJFP01000033
[OJFP] seawater metagenome; Sea water
22709
22633
-
Val
GAC
[ENA]
¢þ
>WENV182574240
OJFR01001080
[OJFR] seawater metagenome; Sea water
6415
6339
-
Val
GAC
[ENA]
¢þ
>WENV182574289
OJFR01002454
[OJFR] seawater metagenome; Sea water
2008
2084
+
Val
GAC
[ENA]
¢þ
>WENV182574652
OJFS01000291
[OJFS] seawater metagenome; Sea water
11257
11333
+
Val
GAC
[ENA]
¢þ
>WENV182576061
OJFX01002051
[OJFX] seawater metagenome; Sea water
2008
2084
+
Val
GAC
[ENA]
¢þ
>WENV182576220
OJFX01005746
[OJFX] seawater metagenome; Sea water
2019
2095
+
Val
GAC
[ENA]
¢þ
>WENV182577366
OJGD01002905
[OJGD] seawater metagenome; Sea water
636
712
+
Val
GAC
[ENA]
¢þ
>WENV182578506
OJGO01000301
[OJGO] seawater metagenome; Sea water
15241
15317
+
Val
GAC
[ENA]
¢þ
>WENV182580021
OJGU01001408
[OJGU] seawater metagenome; Sea water
3439
3515
+
Val
GAC
[ENA]
¢þ
>WENV182580084
OJGU01003320
[OJGU] seawater metagenome; Sea water
773
849
+
Val
GAC
[ENA]
¢þ
>WENV182580388
OJGW01000335
[OJGW] seawater metagenome; Sea water
11494
11418
-
Val
GAC
[ENA]
¢þ
>WENV182581275
OJGX01002003
[OJGX] seawater metagenome; Sea water
5670
5594
-
Val
GAC
[ENA]
¢þ
>WENV182581384
OJGX01004245
[OJGX] seawater metagenome; Sea water
1221
1297
+
Val
GAC
[ENA]
¢þ
>WENV182582011
OJGZ01002817
[OJGZ] seawater metagenome; Sea water
361
285
-
Val
GAC
[ENA]
¢þ
>WENV182583600
OJHE01000041
[OJHE] seawater metagenome; Sea water
11596
11520
-
Val
GAC
[ENA]
¢þ
>WENV182584503
OJHG01000926
[OJHG] seawater metagenome; Sea water
8619
8695
+
Val
GAC
[ENA]
¢þ
>WENV182585232
OJHH01004380
[OJHH] seawater metagenome; Sea water
575
651
+
Val
GAC
[ENA]
¢þ
>WENV182585563
OJHI01000012
[OJHI] seawater metagenome; Sea water
101466
101542
+
Val
GAC
[ENA]
¢þ
>WENV182586039
OJHJ01000412
[OJHJ] seawater metagenome; Sea water
11586
11662
+
Val
GAC
[ENA]
¢þ
>WENV182586360
OJHK01000124
[OJHK] seawater metagenome; Sea water
40223
40299
+
Val
GAC
[ENA]
¢þ
>WENV182587478
OJHM01010029
[OJHM] seawater metagenome; Sea water
199
123
-
Val
GAC
[ENA]
¢þ
>WENV182587992
OJHO01000611
[OJHO] seawater metagenome; Sea water
8974
9050
+
Val
GAC
[ENA]
¢þ
>WENV182588964
OJHY01005312
[OJHY] seawater metagenome; Sea water
1483
1407
-
Val
GAC
[ENA]
¢þ
>WENV182591714
OJIO01002672
[OJIO] seawater metagenome; Sea water
4034
3958
-
Val
GAC
[ENA]
¢þ
>WENV182591739
OJIO01003228
[OJIO] seawater metagenome; Sea water
3081
3005
-
Val
GAC
[ENA]
¢þ
>WENV182592756
OJIR01018763
[OJIR] seawater metagenome; Sea water
96
20
-
Val
GAC
[ENA]
¢þ
>WENV182592872
OJIS01000289
[OJIS] seawater metagenome; Sea water
5401
5325
-
Val
GAC
[ENA]
¢þ
>WENV182592992
OJIS01005421
[OJIS] seawater metagenome; Sea water
995
919
-
Val
GAC
[ENA]
¢þ
>WENV182593125
OJIT01000100
[OJIT] seawater metagenome; Sea water
244
320
+
Val
GAC
[ENA]
¢þ
>WENV183054753
OLGU01002668
[OLGU] seawater metagenome; Sea water
1819
1895
+
Val
GAC
[ENA]
¢þ
>WENV183055280
OLGX01000944
[OLGX] seawater metagenome; Sea water
579
503
-
Val
GAC
[ENA]
¢þ
>WENV183057068
OLHK01001713
[OLHK] seawater metagenome; Sea water
1956
2032
+
Val
GAC
[ENA]
¢þ
>WENV183057310
OLHL01000318
[OLHL] seawater metagenome; Sea water
21702
21778
+
Val
GAC
[ENA]
¢þ
>WENV183062185
OLID01000330
[OLID] seawater metagenome; Sea water
11064
11140
+
Val
GAC
[ENA]
¢þ
>WENV183522052
OMOM01000017
[OMOM] seawater metagenome; Sea water
101466
101542
+
Val
GAC
[ENA]
¢þ
>WENV183628486
OOGO01000053
[OOGO] marine metagenome; sea ice
10319
10395
+
Val
GAC
[ENA]
¢þ
>WENV170015553
AZIH01004615
[AZIH] marine sediment metagenome; enrichment culture of sample MGS-ANC(UA) from oil contaminated site at the Ancona Port
718
794
+
Val
GAC
[ENA]
¢þ
>WENV170234468
CEQK01067011
[CEQK] marine metagenome genome assembly TARA_076_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1375
1299
-
Val
GAC
[ENA]
¢þ
>WENV170664944
JYMV01021253
[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
379819
379895
+
Val
GAC
[ENA]
¢þ
>WENV170667672
JYMV01050242
[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
69639
69715
+
Val
GAC
[ENA]
¢þ
>C191018855
CP021333
Gammaproteobacteria
Marinobacter salarius HL2708#2 [CP021333]
3586009
3585933
-
Val
GAC
-
¡û
>W141819706
JQMK01000002
Gammaproteobacteria
Marinobacter sp. MCTG268 [JQMK]
1841025
1840949
-
Val
GAC
[ENA]
¡û
>W1910000588
AOMK01000887
Gammaproteobacteria
Marinobacter sp. DS40M8 [AOMK]
3367
3443
+
Val
GAC
[ENA]
¡û
>W1911278105
NTFI01000001
Gammaproteobacteria
Marinobacter guineae M3B [NTFI]
455759
455835
+
Val
GAC
[ENA]
¡û
>W1810057877
PDJA01000001
Gammaproteobacteria
Marinobacter sp. LV10MA510-1 [PDJA]
1300205
1300281
+
Val
GAC
[ENA]
¡û
>W1810058541
PDJM01000001
Gammaproteobacteria
Marinobacter sp. LV10R520-4 [PDJM]
4221273
4221349
+
Val
GAC
[ENA]
¡û
>W1810295754
PTIT01000004
Gammaproteobacteria
Marinobacter persicus UTICA-S1B6 [PTIT]
86463
86539
+
Val
GAC
[ENA]
¡û
>W1810295800
PTIU01000004
Gammaproteobacteria
Marinobacter persicus UTICA-S1B9 [PTIU]
103106
103030
-
Val
GAC
[ENA]
¡û
>W1810295844
PTIV01000004
Gammaproteobacteria
Marinobacter persicus UTICA-S1B3 [PTIV]
86463
86539
+
Val
GAC
[ENA]
¡û
>W1810385130
PXNN01000017
Gammaproteobacteria
Marinobacter halophilus JCM 30472 [PXNN]
371541
371617
+
Val
GAC
[ENA]
¡û
>W1810592259
QFWX01000004
Gammaproteobacteria
Marinobacter vulgaris F01 [QFWX]
71939
72015
+
Val
GAC
[ENA]
¡û
>C151017536
CP007151
Gammaproteobacteria
Marinobacter similis A3d10 [CP007151]
163755
163679
-
Val
GAC
[Ensembl]
¡û
>C151017557
CP007152
Gammaproteobacteria
Marinobacter salarius R9SW1 [CP007152]
3232723
3232799
+
Val
GAC
[Ensembl]
¡û
>C151083235
CP011494
Gammaproteobacteria
Marinobacter psychrophilus 20041 [CP011494]
2360209
2360285
+
Val
GAC
[Ensembl]
¡û
>C131005684
CP003735
Gammaproteobacteria
Marinobacter sp. BSs20148 [CP003735]
2374894
2374970
+
Val
GAC
[Ensembl]
¡û
>W1610917054
LSMM01000022
Gammaproteobacteria
Marinobacter sp. Hex_13 [LSMM]
48065
48141
+
Val
GAC
[ENA]
¡û
>W1610919834
LSRT01000443
Gammaproteobacteria
Marinobacter sp. T13-3 [LSRT]
1044
1120
+
Val
GAC
[ENA]
¡û
>W1610919842
LSRT01000654
Gammaproteobacteria
Marinobacter sp. T13-3 [LSRT]
1584
1660
+
Val
GAC
[ENA]
¡û
>W1710553907
FOHZ01000018
Gammaproteobacteria
Marinobacter segnicrescens [FOHZ]
10584
10508
-
Val
GAC
[ENA]
¡û
>W1710566624
FOSC01000005
Gammaproteobacteria
Marinobacter persicus [FOSC]
136422
136346
-
Val
GAC
[ENA]
¡û
>W1710568732
FOTV01000002
Gammaproteobacteria
Marinobacter salarius DSM 26291 [FOTV]
106719
106795
+
Val
GAC
[ENA]
¡û
>W1710575088
FOYW01000001
Gammaproteobacteria
Marinobacter daqiaonensis [FOYW]
734319
734395
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK