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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145382 (81 seq.)
>W1711320457
MBAF01000030
Bacillota
Clostridium beijerinckii [MBAF]
14922
14846
-
Asp
GTC
[ENA]
¡û
>W131098400
AORM01000026
Bacillota
Clostridium botulinum CB11/1-1 [AORM]
13546
13470
-
Asp
GTC
[ENA]
¡û
>W1711791677
MWJB01000073
Bacillota
Clostridium botulinum [MWJB]
10401
10477
+
Asp
GTC
[ENA]
¡û
>W1711791739
MWJC01000026
Bacillota
Clostridium botulinum [MWJC]
6229
6305
+
Asp
GTC
[ENA]
¡û
>W1711791838
MWJD01000006
Bacillota
Clostridium botulinum [MWJD]
46625
46549
-
Asp
GTC
[ENA]
¡û
>W1711791990
MWJG01000015
Bacillota
Clostridium botulinum [MWJG]
42763
42839
+
Asp
GTC
[ENA]
¡û
>W1712042482
NFLT01000007
Bacillota
Tyzzerella sp. An114 [NFLT]
4132
4208
+
Asp
GTC
[ENA]
¡û
>W1712042490
NFLT01000010
Bacillota
Tyzzerella sp. An114 [NFLT]
65480
65404
-
Asp
GTC
[ENA]
¡û
>C171021712
CP013239
Bacillota
Clostridium butyricum CDC_51208 [CP013239]
443462
443538
+
Asp
GTC
-
¡û
>C171077649
CP018335
Bacillota
Clostridium kluyveri JZZ [CP018335]
181390
181466
+
Asp
GTC
-
¡û
>C171077652
CP018335
Bacillota
Clostridium kluyveri JZZ [CP018335]
181753
181829
+
Asp
GTC
-
¡û
>w025876
ABAJ01000001
Bacillota
Clostridium kluyveri DSM 555 [ABAJ]
2068136
2068212
+
Asp
GTC
[ENA]
¡û
>w025873
ABAJ01000001
Bacillota
Clostridium kluyveri DSM 555 [ABAJ]
2067771
2067847
+
Asp
GTC
[ENA]
¡û
>WENV180122651
OASU01012538
[OASU] human gut metagenome; faeces
72
148
+
Asp
GTC
[ENA]
¢þ
>WENV180337489
OBLG01047116
[OBLG] human gut metagenome; human gut
756
832
+
Asp
GTC
[ENA]
¢þ
>WENV180455782
OBXO01047819
[OBXO] human gut metagenome; faeces
143
67
-
Asp
GTC
[ENA]
¢þ
>WENV180529209
OCHJ01136509
[OCHJ] human gut metagenome; human gut
184
108
-
Asp
GTC
[ENA]
¢þ
>WENV180546502
OCIU01001825
[OCIU] human gut metagenome; human gut
13569
13493
-
Asp
GTC
[ENA]
¢þ
>WENV180567599
OCLL01109103
[OCLL] human gut metagenome; human gut
243
167
-
Asp
GTC
[ENA]
¢þ
>WENV180621389
OCQC01001275
[OCQC] human gut metagenome; human gut
12162
12238
+
Asp
GTC
[ENA]
¢þ
>WENV180628794
OCQO01400573
[OCQO] human gut metagenome; human gut
149
73
-
Asp
GTC
[ENA]
¢þ
>WENV180629433
OCQP01094172
[OCQP] human gut metagenome; human gut
261
337
+
Asp
GTC
[ENA]
¢þ
>WENV180629480
OCQP01104715
[OCQP] human gut metagenome; human gut
261
337
+
Asp
GTC
[ENA]
¢þ
>WENV181187495
OENY01031174
[OENY] human gut metagenome; human gut
218
142
-
Asp
GTC
[ENA]
¢þ
>WENV181629841
OGMP01006958
[OGMP] metagenome; Human gut stool
110
35
-
Asp
GTC
[ENA]
¢þ
>WENV181748735
OGQO01006419
[OGQO] human gut metagenome; faeces
21
97
+
Asp
GTC
[ENA]
¢þ
>WENV181805719
OGSJ01000315
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
15390
15466
+
Asp
GTC
[ENA]
¢þ
>WENV181810995
OGSX01000594
[OGSX] human gut metagenome; fecal sample 1 from infant 8
81
157
+
Asp
GTC
[ENA]
¢þ
>WENV181811282
OGSY01000515
[OGSY] human gut metagenome; fecal sample 5 from infant 8
197
273
+
Asp
GTC
[ENA]
¢þ
>WENV181811786
OGSZ01002451
[OGSZ] human gut metagenome; fecal sample 3 from infant 8
86
162
+
Asp
GTC
[ENA]
¢þ
>WENV182091902
OHHG01000092
[OHHG] human gut metagenome; feces
678
602
-
Asp
GTC
[ENA]
¢þ
>WENV182108952
OHIM01005766
[OHIM] human gut metagenome; feces
340
416
+
Asp
GTC
[ENA]
¢þ
>C08003348
CP000673
Bacillota
Clostridium kluyveri DSM 555 [CP000673]
88011
88087
+
Asp
GTC
[Ensembl]
¡û
>C08003351
CP000673
Bacillota
Clostridium kluyveri DSM 555 [CP000673]
88376
88452
+
Asp
GTC
[Ensembl]
¡û
>WENV182410802
OIFM01000055
[OIFM] human gut metagenome; stool
183
107
-
Asp
GTC
[ENA]
¢þ
>WENV182411791
OIFQ01000071
[OIFQ] human gut metagenome; stool
84
160
+
Asp
GTC
[ENA]
¢þ
>WENV182603479
OJJL01015041
[OJJL] metagenome; faeces
736
812
+
Asp
GTC
[ENA]
¢þ
>WENV182622152
OJKJ01008094
[OJKJ] metagenome; faeces
236
312
+
Asp
GTC
[ENA]
¢þ
>WENV182794907
OJSP01078118
[OJSP] human gut metagenome; human gut
14
90
+
Asp
GTC
[ENA]
¢þ
>WENV182815109
OJYO01002107
[OJYO] human gut metagenome; human gut
1863
1787
-
Asp
GTC
[ENA]
¢þ
>WENV182837923
OKGN01000086
[OKGN] human gut metagenome; human gut
35036
35112
+
Asp
GTC
[ENA]
¢þ
>WENV182857973
OKOB01000796
[OKOB] human gut metagenome; human gut
1652
1576
-
Asp
GTC
[ENA]
¢þ
>WENV182891375
OKSH01000888
[OKSH] human gut metagenome; faeces
29391
29466
+
Asp
GTC
[ENA]
¢þ
>WENV182965750
OKWT01000123
[OKWT] human gut metagenome; stool
37064
37140
+
Asp
GTC
[ENA]
¢þ
>C08002652
CP001056
Bacillota
Clostridium botulinum B str. Eklund 17B [NRP] [CP001056]
3769094
3769021
-
Asp
GTC
[Ensembl]
¡û
>C08002581
CP001078
Bacillota
Clostridium botulinum E3 str. Alaska E43 [CP001078]
3627908
3627835
-
Asp
GTC
[Ensembl]
¡û
>W09134274
ACSC01000002
Bacillota
Clostridium botulinum E1 str. 'BoNT E Beluga' [ACSC]
69219
69143
-
Asp
GTC
[ENA]
¡û
>W141822290
JQOJ01000046
Bacillota
Clostridium botulinum [JQOJ]
48428
48352
-
Asp
GTC
[ENA]
¡û
>W141822364
JQOK01000049
Bacillota
Clostridium botulinum [JQOK]
48301
48225
-
Asp
GTC
[ENA]
¡û
>C09103261
AP009049
Bacillota
Clostridium kluyveri NBRC 12016 [AP009049]
88011
88087
+
Asp
GTC
[Ensembl]
¡û
>C09103264
AP009049
Bacillota
Clostridium kluyveri NBRC 12016 [AP009049]
88376
88452
+
Asp
GTC
[Ensembl]
¡û
>W1911159958
NPMX01000014
Bacillota
Clostridium botulinum 202F [NPMX]
318
394
+
Asp
GTC
[ENA]
¡û
>W1911160024
NPMY01000026
Bacillota
Clostridium botulinum Hazen [NPMY]
42481
42557
+
Asp
GTC
[ENA]
¡û
>W1911533859
OKRA01000004
Bacillota
Clostridium cagae Marseille-P4344 [OKRA]
41023
41099
+
Asp
GTC
[ENA]
¡û
>W1830003537
PJTH01000012
Bacillota
Clostridium perfringens Warren [PJTH]
51174
51250
+
Asp
GTC
[ENA]
¡û
>C151012381
CP006777
Bacillota
Clostridium beijerinckii ATCC 35702 SA-1 [CP006777]
5966845
5966769
-
Asp
GTC
[Ensembl]
¡û
>C151012385
CP006777
Bacillota
Clostridium beijerinckii ATCC 35702 SA-1 [CP006777]
5966482
5966406
-
Asp
GTC
[Ensembl]
¡û
>C151012389
CP006777
Bacillota
Clostridium beijerinckii ATCC 35702 SA-1 [CP006777]
5966118
5966042
-
Asp
GTC
[Ensembl]
¡û
>C151012403
CP006777
Bacillota
Clostridium beijerinckii ATCC 35702 SA-1 [CP006777]
3399116
3399040
-
Asp
GTC
[Ensembl]
¡û
>C151014169
CP006903
Bacillota
Clostridium botulinum 202F [CP006903]
2563112
2563036
-
Asp
GTC
[Ensembl]
¡û
>C151070173
CP010520
Bacillota
Clostridium botulinum NCTC 8266 [CP010520]
3580161
3580085
-
Asp
GTC
[Ensembl]
¡û
>C151070252
CP010521
Bacillota
Clostridium botulinum NCTC 8550 [CP010521]
3580162
3580086
-
Asp
GTC
[Ensembl]
¡û
>W1511506767
JXMR01000001
Bacillota
Clostridium botulinum NCTC 11219 [JXMR]
1064334
1064258
-
Asp
GTC
[ENA]
¡û
>W1511699109
LGII01000013
Bacillota
Clostridium botulinum ATCC 23387 [LGII]
42586
42662
+
Asp
GTC
[ENA]
¡û
>C161104318
FR745875
Bacillota
Clostridium botulinum B str. Eklund 17B [NRP] [FR745875]
3750187
3750111
-
Asp
GTC
-
¡û
>W1610601355
LFOM01000009
Bacillota
Clostridium botulinum [LFOM]
51239
51163
-
Asp
GTC
[ENA]
¡û
>W1610602130
LFPA01000147
Bacillota
Clostridium botulinum [LFPA]
55118
55042
-
Asp
GTC
[ENA]
¡û
>W1610602188
LFPB01000077
Bacillota
Clostridium botulinum [LFPB]
83
7
-
Asp
GTC
[ENA]
¡û
>W1610602444
LFPG01000040
Bacillota
Clostridium botulinum [LFPG]
15972
15896
-
Asp
GTC
[ENA]
¡û
>W1610604309
LFQW01000097
Bacillota
Clostridium botulinum [LFQW]
548
624
+
Asp
GTC
[ENA]
¡û
>W1610604354
LFQX01000015
Bacillota
Clostridium botulinum [LFQX]
21202
21126
-
Asp
GTC
[ENA]
¡û
>W1611062480
MBAF01000030
Bacillota
Clostridium beijerinckii [MBAF]
14922
14846
-
Asp
GTC
[ENA]
¡û
>W1710558965
FOMG01000024
Bacillota
Clostridium uliginosum [FOMG]
40501
40577
+
Asp
GTC
[ENA]
¡û
>W1710558969
FOMG01000024
Bacillota
Clostridium uliginosum [FOMG]
40853
40929
+
Asp
GTC
[ENA]
¡û
>W1710722871
LFOM01000009
Bacillota
Clostridium botulinum [LFOM]
51239
51163
-
Asp
GTC
[ENA]
¡û
>W1710723646
LFPA01000147
Bacillota
Clostridium botulinum [LFPA]
55118
55042
-
Asp
GTC
[ENA]
¡û
>W1710723704
LFPB01000077
Bacillota
Clostridium botulinum [LFPB]
83
7
-
Asp
GTC
[ENA]
¡û
>W1710723960
LFPG01000040
Bacillota
Clostridium botulinum [LFPG]
15972
15896
-
Asp
GTC
[ENA]
¡û
>W1710725825
LFQW01000097
Bacillota
Clostridium botulinum [LFQW]
548
624
+
Asp
GTC
[ENA]
¡û
>W1710725870
LFQX01000015
Bacillota
Clostridium botulinum [LFQX]
21202
21126
-
Asp
GTC
[ENA]
¡û
>W1710754764
LHUM01000038
Bacillota
Clostridium botulinum [LHUM]
16022
15946
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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