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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145385 (30 seq.)
>W1711294022
LZZB01000144
Bacillota
Clostridium beijerinckii [LZZB]
11337
11261
-
Arg
TCG
[ENA]
¡û
>W1711294047
LZZC01000024
Bacillota
Clostridium beijerinckii [LZZC]
37471
37547
+
Arg
TCG
[ENA]
¡û
>W1711294147
LZZD01000115
Bacillota
Clostridium beijerinckii [LZZD]
79
155
+
Arg
TCG
[ENA]
¡û
>W1711294197
LZZE01000106
Bacillota
Clostridium beijerinckii [LZZE]
930
1006
+
Arg
TCG
[ENA]
¡û
>W1711294220
LZZF01000128
Bacillota
Clostridium beijerinckii [LZZF]
11039
10963
-
Arg
TCG
[ENA]
¡û
>W1711294260
LZZG01000087
Bacillota
Clostridium beijerinckii [LZZG]
12798
12722
-
Arg
TCG
[ENA]
¡û
>W1711294294
LZZH01000132
Bacillota
Clostridium beijerinckii [LZZH]
12798
12722
-
Arg
TCG
[ENA]
¡û
>W1711294390
LZZJ01000125
Bacillota
Clostridium beijerinckii [LZZJ]
3043
2967
-
Arg
TCG
[ENA]
¡û
>W1711294455
LZZK01000054
Bacillota
Clostridium beijerinckii [LZZK]
4583
4507
-
Arg
TCG
[ENA]
¡û
>W1711320492
MBAF01000044
Bacillota
Clostridium beijerinckii [MBAF]
24331
24407
+
Arg
TCG
[ENA]
¡û
>W1711794363
MWMH01000008
Bacillota
Clostridium beijerinckii [MWMH]
223979
224055
+
Arg
TCG
[ENA]
¡û
>W1712096610
NHZR01000026
Bacillota
Clostridium diolis [NHZR]
43492
43568
+
Arg
TCG
[ENA]
¡û
>C171045831
CP016090
Bacillota
Clostridium beijerinckii BAS/B3/I/124 [CP016090]
392825
392901
+
Arg
TCG
-
¡û
>C005076
CP000721
Bacillota
Clostridium beijerinckii NCIMB 8052 [CP000721]
433303
433379
+
Arg
TCG
[Ensembl]
¡û
>w011540
AALO01000070
Bacillota
Clostridium beijerinckii NCIMB 8052 [AALO]
13546
13468
-
Arg
TCG
[ENA]
¡û
>WENV180232312
OBCO01000296
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
41585
41661
+
Arg
TCG
[ENA]
¢þ
>WENV180233456
OBCP01000570
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
676
752
+
Arg
TCG
[ENA]
¢þ
>WENV180569902
OCLR01000725
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
487
563
+
Arg
TCG
[ENA]
¢þ
>WENV180570847
OCLS01000737
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
379
455
+
Arg
TCG
[ENA]
¢þ
>WENV180571816
OCLT01000552
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
97
173
+
Arg
TCG
[ENA]
¢þ
>WENV180574084
OCLW01000595
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
97
173
+
Arg
TCG
[ENA]
¢þ
>WENV180640107
OCRL01000544
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
97
173
+
Arg
TCG
[ENA]
¢þ
>WENV180641086
OCRM01000580
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
97
173
+
Arg
TCG
[ENA]
¢þ
>W141083141
AUPH01001976
Bacillota
Clostridium beijerinckii AAU1 [AUPH]
282
206
-
Arg
TCG
[ENA]
¡û
>C181203641
LN908213
Bacillota
Clostridium beijerinckii [LN908213]
447796
447872
+
Arg
TCG
-
¡û
>W141560268
JHXK01000047
Bacillota
Clostridium beijerinckii HUN142 [JHXK]
142
218
+
Arg
TCG
[ENA]
¡û
>W1810250491
PQCR01000028
Bacillota
Clostridium sp. 2-1 [PQCR]
61427
61351
-
Arg
TCG
[ENA]
¡û
>C151012359
CP006777
Bacillota
Clostridium beijerinckii ATCC 35702 SA-1 [CP006777]
433303
433379
+
Arg
TCG
[Ensembl]
¡û
>C161023464
CP010086
Bacillota
Clostridium beijerinckii NCIMB 14988 [CP010086]
404904
404980
+
Arg
TCG
[Ensembl]
¡û
>W1611062515
MBAF01000044
Bacillota
Clostridium beijerinckii [MBAF]
24331
24407
+
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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