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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145395 (82 seq.)
>W1710778555
LJDA01000057
Bacillota
Lactobacillus crispatus [LJDA]
23367
23442
+
Arg
TCT
[ENA]
¡û
>W1711083902
LSVI01000122
Bacillota
Lactobacillus helveticus [LSVI]
8042
8116
+
Arg
TCT
[ENA]
¡û
>W1711083983
LSVJ01000182
Bacillota
Lactobacillus helveticus [LSVJ]
8341
8415
+
Arg
TCT
[ENA]
¡û
>W1711632551
MPSU01000027
Bacillota
Lactobacillus helveticus [MPSU]
44047
44121
+
Arg
TCT
[ENA]
¡û
>C171051883
CP016827
Bacillota
Lactobacillus helveticus D76 [CP016827]
710062
709988
-
Arg
TCT
-
¡û
>C171102967
CP020029
Bacillota
Lactobacillus helveticus D75 [CP020029]
1331328
1331254
-
Arg
TCT
-
¡û
>W141244110
CAKC01000001
Bacillota
Lactobacillus gigeriorum CRBIP 24.85 [CAKC]
39269
39344
+
Arg
TCT
[ENA]
¡û
>W141244181
CAKD01000023
Bacillota
Lactobacillus pasteurii CRBIP 24.76 [CAKD]
239379
239454
+
Arg
TCT
[ENA]
¡û
>C08006144
CP000517
Bacillota
Lactobacillus helveticus DPC 4571 [CP000517]
1417129
1417055
-
Arg
TCT
[Ensembl]
¡û
>W141255442
CBUH010000176
Bacillota
Lactobacillus helveticus CIRM-BIA 953 [CBUH]
4050
3976
-
Arg
TCT
[ENA]
¡û
>W141255581
CBUK010000179
Bacillota
Lactobacillus helveticus CIRM-BIA 951 [CBUK]
19283
19357
+
Arg
TCT
[ENA]
¡û
>W141255604
CBUL010000056
Bacillota
Lactobacillus helveticus CIRM-BIA 104 [CBUL]
8035
8109
+
Arg
TCT
[ENA]
¡û
>W141255659
CBUM010000099
Bacillota
Lactobacillus helveticus CIRM-BIA 103 [CBUM]
1892
1818
-
Arg
TCT
[ENA]
¡û
>W141255734
CBUN010000124
Bacillota
Lactobacillus helveticus CIRM-BIA 101 [CBUN]
47769
47695
-
Arg
TCT
[ENA]
¡û
>WENV183237654
OLQY01000965
[OLQY] human gut metagenome; faeces
3830
3754
-
Arg
TCT
[ENA]
¢þ
>WENV183771650
PPYF01000009
[PPYF] human gut metagenome; stool from patient with Crohn's disease
51199
51125
-
Arg
TCT
[ENA]
¢þ
>WENV183772456
PPYF01016929
[PPYF] human gut metagenome; stool from patient with Crohn's disease
12553
12627
+
Arg
TCT
[ENA]
¢þ
>C181017324
CP015444
Bacillota
Lactobacillus helveticus FAM8627 [CP015444]
1106495
1106421
-
Arg
TCT
-
¡û
>C181017462
CP015496
Bacillota
Lactobacillus helveticus FAM8105 [CP015496]
786758
786832
+
Arg
TCT
-
¡û
>C181017524
CP015498
Bacillota
Lactobacillus helveticus FAM22155 [CP015498]
803130
803204
+
Arg
TCT
-
¡û
>C191014841
CP017982
Bacillota
Lactobacillus helveticus LH99 [CP017982]
726741
726815
+
Arg
TCT
-
¡û
>C191016264
CP019581
Bacillota
Lactobacillus helveticus LH5 [CP019581]
103353
103427
+
Arg
TCT
-
¡û
>C191044606
CP026503
Bacillota
Lactobacillus crispatus AB70 [CP026503]
838751
838826
+
Arg
TCT
-
¡û
>C191073277
CP031016
Bacillota
Lactobacillus helveticus [CP031016]
785478
785552
+
Arg
TCT
-
¡û
>C191073345
CP031018
Bacillota
Lactobacillus helveticus [CP031018]
773581
773655
+
Arg
TCT
-
¡û
>C191138849
CP035307
Bacillota
Lactobacillus helveticus IDCC3801 [CP035307]
1236591
1236517
-
Arg
TCT
-
¡û
>W09128089
ACLM01000010
Bacillota
Lactobacillus helveticus DSM 20075 [ACLM]
47373
47299
-
Arg
TCT
[ENA]
¡û
>W1910755326
MKXG01000023
Bacillota
Lactobacillus crispatus DISK12 [MKXG]
79794
79869
+
Arg
TCT
[ENA]
¡û
>W1910922946
NIGM01000006
Bacillota
Lactobacillus helveticus M92 [NIGM]
8608
8682
+
Arg
TCT
[ENA]
¡û
>W1910923346
NIGX01000005
Bacillota
Lactobacillus helveticus LMG S-29187 [NIGX]
7982
8056
+
Arg
TCT
[ENA]
¡û
>W1910979142
NKKS01000108
Bacillota
Lactobacillus crispatus RL31 [NKKS]
38825
38750
-
Arg
TCT
[ENA]
¡û
>W1910979272
NKKU01000110
Bacillota
Lactobacillus crispatus RL29 [NKKU]
38831
38756
-
Arg
TCT
[ENA]
¡û
>W1910980720
NKLR01000119
Bacillota
Lactobacillus crispatus RL02 [NKLR]
41309
41234
-
Arg
TCT
[ENA]
¡û
>W1911218685
NRQX01000119
Bacillota
Lactobacillus helveticus UC1156 [NRQX]
1789
1715
-
Arg
TCT
[ENA]
¡û
>W1911531941
OGTV01000051
Bacillota
Lactobacillus helveticus [OGTV]
20716
20790
+
Arg
TCT
[ENA]
¡û
>W1911531995
OGTV02000050
Bacillota
Lactobacillus helveticus [OGTV]
20716
20790
+
Arg
TCT
[ENA]
¡û
>W1911569956
PCZD01000026
Bacillota
Lactobacillus sp. UMNPBX6 [PCZD]
2542
2617
+
Arg
TCT
[ENA]
¡û
>W1911570067
PCZF01000012
Bacillota
Lactobacillus sp. UMNPBX4 [PCZF]
49420
49346
-
Arg
TCT
[ENA]
¡û
>W1911632268
PUFQ01000021
Bacillota
Lactobacillus pasteurii DSM 23907 [PUFQ]
77664
77589
-
Arg
TCT
[ENA]
¡û
>W1911702119
QNXC01000016
Bacillota
Lactobacillus helveticus TJA10 [QNXC]
13989
14063
+
Arg
TCT
[ENA]
¡û
>W1810177279
PJRL01000017
Bacillota
Lactobacillus helveticus ATCC 12046 [PJRL]
104109
104035
-
Arg
TCT
[ENA]
¡û
>W1810190954
PKKF01000023
Bacillota
Lactobacillus crispatus UMB0054 [PKKF]
24662
24737
+
Arg
TCT
[ENA]
¡û
>W1810473197
QAHI01000006
Bacillota
Lactobacillus helveticus DS21_8 [QAHI]
41439
41365
-
Arg
TCT
[ENA]
¡û
>W1810473263
QAHJ01000021
Bacillota
Lactobacillus helveticus DS12_8 [QAHJ]
5284
5210
-
Arg
TCT
[ENA]
¡û
>W1810489036
QAZT01000020
Bacillota
Lactobacillus helveticus DS18_8 [QAZT]
25856
25930
+
Arg
TCT
[ENA]
¡û
>W1810489093
QAZU01000005
Bacillota
Lactobacillus helveticus DS3_8 [QAZU]
25910
25984
+
Arg
TCT
[ENA]
¡û
>W1810665859
QJOG01000094
Bacillota
Lactobacillus helveticus FAM22157 [QJOG]
4643
4569
-
Arg
TCT
[ENA]
¡û
>W1810665886
QJOH01000029
Bacillota
Lactobacillus helveticus FAM22076 [QJOH]
8071
8145
+
Arg
TCT
[ENA]
¡û
>W1810665950
QJOI01000054
Bacillota
Lactobacillus helveticus FAM13019 [QJOI]
1774
1848
+
Arg
TCT
[ENA]
¡û
>W1810666005
QJOJ01000044
Bacillota
Lactobacillus helveticus FAM1450 [QJOJ]
10647
10573
-
Arg
TCT
[ENA]
¡û
>W1810666052
QJOK01000007
Bacillota
Lactobacillus helveticus FAM1213 [QJOK]
5433
5359
-
Arg
TCT
[ENA]
¡û
>W1810666128
QJOL01000048
Bacillota
Lactobacillus helveticus FAM1182 [QJOL]
2149
2223
+
Arg
TCT
[ENA]
¡û
>W1810666216
QJOM01000089
Bacillota
Lactobacillus helveticus FAM23285 [QJOM]
2115
2189
+
Arg
TCT
[ENA]
¡û
>W1810666279
QJON01000090
Bacillota
Lactobacillus helveticus FAM19191 [QJON]
2116
2190
+
Arg
TCT
[ENA]
¡û
>W1810666347
QJOO01000092
Bacillota
Lactobacillus helveticus FAM19188 [QJOO]
4643
4569
-
Arg
TCT
[ENA]
¡û
>W1810666404
QJOP01000122
Bacillota
Lactobacillus helveticus FAM14499 [QJOP]
1160
1234
+
Arg
TCT
[ENA]
¡û
>W1810666470
QJOQ01000098
Bacillota
Lactobacillus helveticus FAM8102 [QJOQ]
4503
4429
-
Arg
TCT
[ENA]
¡û
>W1810666525
QJOR01000087
Bacillota
Lactobacillus helveticus FAM14275 [QJOR]
2116
2190
+
Arg
TCT
[ENA]
¡û
>W1810666588
QJOS01000093
Bacillota
Lactobacillus helveticus FAM8106 [QJOS]
4503
4429
-
Arg
TCT
[ENA]
¡û
>W1810679585
QKQX01000032
Bacillota
Lactobacillus helveticus FAM21493 [QKQX]
15487
15561
+
Arg
TCT
[ENA]
¡û
>C151003436
CP002427
Bacillota
Lactobacillus helveticus H9 [CP002427]
1242857
1242782
-
Arg
TCT
[Ensembl]
¡û
>C151061713
CP009907
Bacillota
Lactobacillus helveticus KLDS1.8701 [CP009907]
943986
944060
+
Arg
TCT
[Ensembl]
¡û
>C151081870
CP011386
Bacillota
Lactobacillus helveticus MB2-1 [CP011386]
1475856
1475782
-
Arg
TCT
[Ensembl]
¡û
>C11112897
CP002429
Bacillota
Lactobacillus helveticus H10 [CP002429]
768314
768388
+
Arg
TCT
[Ensembl]
¡û
>W1511354482
JRQG01000129
Bacillota
Lactobacillus helveticus ATCC 10386 [JRQG]
59169
59095
-
Arg
TCT
[ENA]
¡û
>W1511355792
JRTS01000124
Bacillota
Lactobacillus helveticus M3 [JRTS]
59167
59093
-
Arg
TCT
[ENA]
¡û
>W11138494
AEIR01000003
Bacillota
Lactobacillus helveticus R0052 [AEIR]
1281534
1281460
-
Arg
TCT
[ENA]
¡û
>W11152511
AEYL01000106
Bacillota
Lactobacillus helveticus MTCC 5463 [AEYL]
3693
3619
-
Arg
TCT
[ENA]
¡û
>C161041489
CP012381
Bacillota
Lactobacillus helveticus CAUH18 [CP012381]
782756
782830
+
Arg
TCT
-
¡û
>W1610032323
AYZN01000001
Bacillota
Lactobacillus pasteurii DSM 23907 = CRBIP 24.76 [AYZN]
73980
73905
-
Arg
TCT
[ENA]
¡û
>W1610032359
AYZO01000005
Bacillota
Lactobacillus gigeriorum DSM 23908 = CRBIP 24.85 [AYZO]
34548
34473
-
Arg
TCT
[ENA]
¡û
>W1610035311
AZEK01000003
Bacillota
Lactobacillus helveticus DSM 20075 = CGMCC 1.1877 [AZEK]
6337
6411
+
Arg
TCT
[ENA]
¡û
>C131001272
CP002081
Bacillota
Lactobacillus helveticus CNRZ32 [CP002081]
1568674
1568600
-
Arg
TCT
[Ensembl]
¡û
>C131007129
CP003799
Bacillota
Lactobacillus helveticus R0052 [CP003799]
752371
752445
+
Arg
TCT
[Ensembl]
¡û
>W1610528878
JQBQ01000008
Bacillota
Lactobacillus amylovorus DSM 16698 [JQBQ]
3192
3116
-
Arg
TCT
[ENA]
¡û
>W1610529825
JQCJ01000117
Bacillota
Lactobacillus helveticus [JQCJ]
1761
1687
-
Arg
TCT
[ENA]
¡û
>W1610642774
LJDA01000057
Bacillota
Lactobacillus crispatus [LJDA]
23367
23442
+
Arg
TCT
[ENA]
¡û
>W1610922655
LSVI01000122
Bacillota
Lactobacillus helveticus [LSVI]
8042
8116
+
Arg
TCT
[ENA]
¡û
>W1610922736
LSVJ01000182
Bacillota
Lactobacillus helveticus [LSVJ]
8341
8415
+
Arg
TCT
[ENA]
¡û
>W1710559277
FOMN01000003
Bacillota
Lactobacillus bombicola [FOMN]
65126
65201
+
Arg
TCT
[ENA]
¡û
>W1710630468
JQBQ01000008
Bacillota
Lactobacillus amylovorus DSM 16698 [JQBQ]
3192
3116
-
Arg
TCT
[ENA]
¡û
>W1710631415
JQCJ01000117
Bacillota
Lactobacillus helveticus [JQCJ]
1761
1687
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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