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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145543 (66 seq.)
>C010355
CU207211
Betaproteobacteria
Herminiimonas arsenicoxydans [CU207211]
595078
595154
+
Pro
CGG
[Ensembl]
¡û
>C014748
AL954747
Betaproteobacteria
Nitrosomonas europaea ATCC 19718 [AL954747]
2069234
2069310
+
Pro
CGG
[Ensembl]
¡û
>C014806
CP000450
Betaproteobacteria
Nitrosomonas eutropha C91 [CP000450]
841148
841072
-
Pro
CGG
[Ensembl]
¡û
>WENV180296594
OBJA01001045
[OBJA] soil metagenome; sediment, water from around vicinity
14627
14703
+
Pro
CGG
[ENA]
¢þ
>WENV180328181
OBKU01002072
[OBKU] human gut metagenome; human gut
1533
1457
-
Pro
CGG
[ENA]
¢þ
>w002412
AABB02000001
Betaproteobacteria
Nitrosomonas europaea [AABB]
2069239
2069317
+
Pro
CGG
[ENA]
¡û
>WENV180713502
ODFV01002462
[ODFV] human metagenome; G_DNA_Stool
3772
3848
+
Pro
CGG
[ENA]
¢þ
>WENV181048832
ODYC01023247
[ODYC] human metagenome; G_DNA_Stool
232
308
+
Pro
CGG
[ENA]
¢þ
>WENV181285939
OFGU01009720
[OFGU] soil metagenome; Clay
472
396
-
Pro
CGG
[ENA]
¢þ
>WENV181286559
OFGW01004533
[OFGW] soil metagenome; Clay
228
304
+
Pro
CGG
[ENA]
¢þ
>WENV181292100
OFHD01035033
[OFHD] soil metagenome; Clay
321
397
+
Pro
CGG
[ENA]
¢þ
>WENV181294213
OFHG01106271
[OFHG] soil metagenome; Clay
276
352
+
Pro
CGG
[ENA]
¢þ
>WENV181294678
OFHH01023074
[OFHH] soil metagenome; Clay
243
319
+
Pro
CGG
[ENA]
¢þ
>WENV181498618
OGGF01013757
[OGGF] metagenome; Human gut stool
890
814
-
Pro
CGG
[ENA]
¢þ
>WENV181523673
OGHH01000450
[OGHH] metagenome; Human gut stool
29050
28974
-
Pro
CGG
[ENA]
¢þ
>WENV181573921
OGJS01000566
[OGJS] metagenome; Human gut stool
14173
14097
-
Pro
CGG
[ENA]
¢þ
>WENV181580896
OGKA01000728
[OGKA] metagenome; Human gut stool
24004
23928
-
Pro
CGG
[ENA]
¢þ
>WENV181592356
OGKR01004942
[OGKR] metagenome; Human gut stool
1336
1260
-
Pro
CGG
[ENA]
¢þ
>WENV181624105
OGMJ01003200
[OGMJ] metagenome; Human gut stool
3655
3731
+
Pro
CGG
[ENA]
¢þ
>WENV181635882
OGMY01010235
[OGMY] metagenome; Human gut stool
109
185
+
Pro
CGG
[ENA]
¢þ
>WENV181701886
OGPH01007711
[OGPH] human gut metagenome; faeces
2768
2844
+
Pro
CGG
[ENA]
¢þ
>WENV181833210
OGUQ01000840
[OGUQ] metagenome; Human gut stool
6257
6333
+
Pro
CGG
[ENA]
¢þ
>WENV181935291
OGYU01002623
[OGYU] human gut metagenome; faeces
6553
6477
-
Pro
CGG
[ENA]
¢þ
>WENV182156270
OHLR01008554
[OHLR] human gut metagenome; feces
628
552
-
Pro
CGG
[ENA]
¢þ
>WENV182261396
OHTK01024582
[OHTK] human gut metagenome; feces
253
329
+
Pro
CGG
[ENA]
¢þ
>WENV182639147
OJLA01043202
[OJLA] metagenome; faeces
475
551
+
Pro
CGG
[ENA]
¢þ
>WENV182650107
OJMG01042659
[OJMG] human gut metagenome; feces
395
319
-
Pro
CGG
[ENA]
¢þ
>WENV182653117
OJMH01109579
[OJMH] human gut metagenome; feces
426
502
+
Pro
CGG
[ENA]
¢þ
>WENV182657706
OJMK01006369
[OJMK] human gut metagenome; feces
795
719
-
Pro
CGG
[ENA]
¢þ
>WENV182690072
OJOD01025049
[OJOD] human gut metagenome; stool sample
118
194
+
Pro
CGG
[ENA]
¢þ
>WENV182740599
OJQL01038439
[OJQL] human gut metagenome; stool sample
79
155
+
Pro
CGG
[ENA]
¢þ
>WENV183066970
OLIL01003168
[OLIL] metagenome; faeces
733
657
-
Pro
CGG
[ENA]
¢þ
>WENV183356279
OLXE01002248
[OLXE] human gut metagenome; feces
1487
1563
+
Pro
CGG
[ENA]
¢þ
>WENV183516321
OMKS01159055
[OMKS] sediment metagenome; hot spring sediment
487
411
-
Pro
CGG
[ENA]
¢þ
>WENV183531986
OOAC01018997
[OOAC] human gut metagenome; human gut
1370
1294
-
Pro
CGG
[ENA]
¢þ
>WENV183533856
OOAE01003248
[OOAE] human gut metagenome; human gut
1905
1829
-
Pro
CGG
[ENA]
¢þ
>WENV183547772
OOAW01000102
[OOAW] human gut metagenome; human gut
74399
74475
+
Pro
CGG
[ENA]
¢þ
>WENV183554345
OOBM01004784
[OOBM] human gut metagenome; human gut
1133
1057
-
Pro
CGG
[ENA]
¢þ
>WENV183595052
OODC01001184
[OODC] human gut metagenome; human gut
2835
2911
+
Pro
CGG
[ENA]
¢þ
>WENV183599741
OODH01005760
[OODH] human gut metagenome; human gut
2893
2969
+
Pro
CGG
[ENA]
¢þ
>WENV183781236
PPYF01195470
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1042
966
-
Pro
CGG
[ENA]
¢þ
>WENV170040560
CDYS01036458
[CDYS] gut metagenome; human stools
392
316
-
Pro
CGG
[ENA]
¢þ
>WENV170043912
CDYU01052330
[CDYU] gut metagenome; human stools
5024
5100
+
Pro
CGG
[ENA]
¢þ
>WENV170088954
CEAE01024501
[CEAE] gut metagenome; human stools
1733
1657
-
Pro
CGG
[ENA]
¢þ
>WENV170111643
CECJ01013073
[CECJ] gut metagenome; human stools
1135
1059
-
Pro
CGG
[ENA]
¢þ
>WENV170711405
LNFM01005104
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
18314
18238
-
Pro
CGG
[ENA]
¢þ
>WENV170766007
LWDU01040316
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
265690
265614
-
Pro
CGG
[ENA]
¢þ
>W09103411
AAJE01000026
Betaproteobacteria
Nitrosomonas eutropha C71 [AAJE]
18744
18668
-
Pro
CGG
[ENA]
¡û
>W1910226497
FMWO01000045
Betaproteobacteria
Nitrosomonas mobilis [FMWO]
9717
9793
+
Pro
CGG
[ENA]
¡û
>W1910699553
MERM01000162
Betaproteobacteria
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 [MERM]
42195
42271
+
Pro
CGG
[ENA]
¡û
>W1910910721
NHMP01000004
Betaproteobacteria
Turicimonas muris YL45 [NHMP]
102813
102889
+
Pro
CGG
[ENA]
¡û
>W1810463547
PZZQ01000004
Betaproteobacteria
Nitrosomonas eutropha Nm19 [PZZQ]
68491
68415
-
Pro
CGG
[ENA]
¡û
>W1810628632
QICQ01000002
Betaproteobacteria
Nitrosomonas eutropha Nm 57 [QICQ]
62006
62082
+
Pro
CGG
[ENA]
¡û
>W1810881863
QUKP01000019
Betaproteobacteria
Burkholderiales bacterium TF07-50 [QUKP]
36068
35992
-
Pro
CGG
[ENA]
¡û
>C151082854
CP011451
Betaproteobacteria
Nitrosomonas communis Nm2 [CP011451]
649776
649852
+
Pro
CGG
[Ensembl]
¡û
>C161087228
CP015403
Betaproteobacteria
Burkholderiales bacterium YL45 [CP015403]
2591231
2591307
+
Pro
CGG
[Ensembl]
¡û
>W1610574705
JZQZ01000288
Betaproteobacteria
Nitrosomonas europaea [JZQZ]
6767
6843
+
Pro
CGG
[ENA]
¡û
>W1710505679
FMTW01000004
Betaproteobacteria
Nitrosomonas eutropha [FMTW]
62024
62100
+
Pro
CGG
[ENA]
¡û
>W1710517415
FNDH01000037
Betaproteobacteria
Nitrosomonas sp. Nm132 [FNDH]
7538
7462
-
Pro
CGG
[ENA]
¡û
>W1710528772
FNNM01000005
Betaproteobacteria
Nitrosomonas eutropha [FNNM]
61609
61685
+
Pro
CGG
[ENA]
¡û
>W1710529371
FNNX01000022
Betaproteobacteria
Nitrosomonas europaea [FNNX]
9525
9449
-
Pro
CGG
[ENA]
¡û
>W1710541276
FNYF01000003
Betaproteobacteria
Nitrosomonas eutropha [FNYF]
60773
60849
+
Pro
CGG
[ENA]
¡û
>W1710554048
FOID01000023
Betaproteobacteria
Nitrosomonas europaea [FOID]
9525
9449
-
Pro
CGG
[ENA]
¡û
>W1710578289
FPBL01000019
Betaproteobacteria
Nitrosomonas eutropha [FPBL]
5706
5782
+
Pro
CGG
[ENA]
¡û
>W1710600408
FUWK01000022
Betaproteobacteria
Nitrosomonas europaea [FUWK]
36363
36439
+
Pro
CGG
[ENA]
¡û
>W1710691940
JZQZ01000288
Betaproteobacteria
Nitrosomonas europaea [JZQZ]
6767
6843
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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