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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145549 (15 seq.)
>W131092210
AOIG01000019
Bacillota
Paenibacillus sp. A9 [AOIG]
43535
43610
+
Arg
TCT
[ENA]
¡û
>W1711075865
LSKU01000001
Bacillota
Tepidibacillus decaturensis [LSKU]
516417
516493
+
Arg
TCT
[ENA]
¡û
>W1711430663
MIJF01000010
Bacillota
Vulcanibacillus modesticaldus [MIJF]
16559
16635
+
Arg
TCT
[ENA]
¡û
>W1711720449
MTIT01000002
Bacillota
Sutcliffiella halmapala halmapalus [MTIT]
1297526
1297602
+
Arg
TCT
[ENA]
¡û
>C171098106
CP019687
Bacillota
Paenibacillus larvae subsp. larvae ATCC 9545 [CP019687]
3051473
3051397
-
Arg
TCT
-
¡û
>C181033618
CP018866
Bacillota
Sutcliffiella cohnii DSM 6307 [CP018866]
3296048
3295972
-
Arg
TCT
-
¡û
>W1510650602
CVRB01000004
Bacillota
Neobacillus massiliamazoniensis LF1 [CVRB]
668334
668258
-
Arg
TCT
[ENA]
¡û
>W1511577332
LAQQ01000009
Bacillota
Paenibacillus dauci H9 [LAQQ]
43893
43968
+
Arg
TCT
[ENA]
¡û
>W1610072351
BCUW01000093
Bacillota
Sutcliffiella cohnii NBRC 15565 [BCUW]
9504
9428
-
Arg
TCT
[ENA]
¡û
>W1610082726
BDGM01000001
Bacillota
Tepidibacillus sp. HK-1 [BDGM]
49950
49874
-
Arg
TCT
[ENA]
¡û
>W1610584091
LBMD01000006
Bacillota
Bacillus sp. CHD6a [LBMD]
203075
203151
+
Arg
TCT
[ENA]
¡û
>W1610915170
LSKU01000001
Bacillota
Tepidibacillus decaturensis [LSKU]
516417
516493
+
Arg
TCT
[ENA]
¡û
>W1710069553
BCUW01000093
Bacillota
Sutcliffiella cohnii NBRC 15565 [BCUW]
9504
9428
-
Arg
TCT
[ENA]
¡û
>W1710081900
BDGM01000001
Bacillota
Tepidibacillus sp. HK-1 [BDGM]
49950
49874
-
Arg
TCT
[ENA]
¡û
>W1710703239
LBMD01000006
Bacillota
Bacillus sp. CHD6a [LBMD]
203075
203151
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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