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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145557 (49 seq.)
>W1711059949
LRXL01000026
Bacteroidota
Cochleicola gelatinilyticus LPB0005 [LRXL]
862596
862672
+
Met
CAT
[ENA]
¡û
>W1711210461
LXIE01000023
Bacteroidota
Aequorivita soesokkakensis [LXIE]
14670
14596
-
Met
CAT
[ENA]
¡û
>W1711352950
MDDP01000023
Bacteroidota
Cellulophaga omnivescoria W5C [MDDP]
97107
97031
-
Met
CAT
[ENA]
¡û
>w013993
AAOC01000001
Bacteroidota
Maribacter sp. HTCC2170 HTCC2170 [AAOC]
974520
974596
+
Met
CAT
[ENA]
¡û
>C171036277
CP015172
Bacteroidota
Cellulophaga lytica DAU203 [CP015172]
1551841
1551765
-
Met
CAT
-
¡û
>C171046728
CP016269
Bacteroidota
Flavobacteriaceae bacterium UJ101 [CP016269]
1232505
1232431
-
Met
CAT
-
¡û
>WENV180214681
OBAP01040199
[OBAP] marine metagenome; ENVO:00002010 for 'seawater
35
109
+
Ile2
CAT
[ENA]
¢þ
>WENV180357286
OBNN01000897
[OBNN] marine metagenome; Coastal water
107
33
-
Ile2
CAT
[ENA]
¢þ
>WENV181392296
OFRW01023158
[OFRW] seawater metagenome; seawater
127
53
-
Ile2
CAT
[ENA]
¢þ
>WENV182543148
OJBA01000909
[OJBA] seawater metagenome; Sea water
508
434
-
Ile2
CAT
[ENA]
¢þ
>WENV182588856
OJHY01000588
[OJHY] seawater metagenome; Sea water
2090
2016
-
Ile2
CAT
[ENA]
¢þ
>W141274941
JACC01000023
Bacteroidota
Aquimarina pacifica SW150 [JACC]
92223
92299
+
Met
CAT
[ENA]
¡û
>W141276101
JADN01000008
Bacteroidota
Tenacibaculum sp. 47A_GOM-205m [JADN]
136313
136239
-
Met
CAT
[ENA]
¡û
>WENV183055877
OLHH01003870
[OLHH] seawater metagenome; Sea water
1578
1652
+
Ile2
CAT
[ENA]
¢þ
>WENV183058541
OLHR01000820
[OLHR] seawater metagenome; Sea water
7826
7900
+
Ile2
CAT
[ENA]
¢þ
>WENV183522060
OMOM01000027
[OMOM] seawater metagenome; Sea water
85578
85652
+
Ile2
CAT
[ENA]
¢þ
>WENV183617613
OOEG01017838
[OOEG] marine metagenome; sea ice
411
337
-
Ile2
CAT
[ENA]
¢þ
>WENV183627023
OOGK01024080
[OOGK] marine metagenome; seawater
127
53
-
Ile2
CAT
[ENA]
¢þ
>WENV183630434
OOGS01014453
[OOGS] marine metagenome; seawater
364
290
-
Ile2
CAT
[ENA]
¢þ
>WENV183717034
PDWJ01000392
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
56723
56797
+
Ile2
CAT
[ENA]
¢þ
>WENV183718867
PDWJ01007153
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
3769
3843
+
Ile2
CAT
[ENA]
¢þ
>WENV170202516
CEPR01051196
[CEPR] marine metagenome genome assembly TARA_039_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
82261
82335
+
Met
CAT
[ENA]
¢þ
>WENV170271688
CERJ01077268
[CERJ] marine metagenome genome assembly TARA_066_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
10746
10672
-
Met
CAT
[ENA]
¢þ
>WENV170469246
CEVF01097520
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
8035
7961
-
Met
CAT
[ENA]
¢þ
>WENV170567592
FLMP01002186
[FLMP] seawater metagenome; seawater
5806
5882
+
Met
CAT
[ENA]
¢þ
>WENV170802693
MDSW01018153
[MDSW] marine metagenome; seawater
56
130
+
Met
CAT
[ENA]
¢þ
>C181188065
CP030104
Bacteroidota
Allomuricauda aurantiaca HME9304 [CP030104]
1619114
1619040
-
Met
CAT
-
¡û
>C191127749
CP034570
Bacteroidota
Maribacter sp. MJ134 [CP034570]
3145548
3145622
+
Met
CAT
-
¡û
>W1910545608
FZLT01000022
Bacteroidota
Cellulophaga lytica [FZLT]
38877
38803
-
Met
CAT
[ENA]
¡û
>W1910857450
NBWU01000001
Bacteroidota
Sediminicola luteus HQA918 [NBWU]
1312206
1312282
+
Met
CAT
[ENA]
¡û
>W1810121570
PHUL01000001
Bacteroidota
Algibacter sp. RHA_19 [PHUL]
982599
982673
+
Met
CAT
[ENA]
¡û
>W1810595437
QGEG01000001
Bacteroidota
Allomuricauda koreensis ECD12 [QGEG]
791076
791150
+
Met
CAT
[ENA]
¡û
>W1810695744
QLNV01000005
Bacteroidota
Sinomicrobium sp. N-1-3-6 [QLNV]
301
226
-
Met
CAT
[ENA]
¡û
>C151046358
CP009239
Bacteroidota
Cellulophaga lytica HI1 [CP009239]
1414154
1414078
-
Met
CAT
[Ensembl]
¡û
>C10106844
CP002157
Bacteroidota
Maribacter sp. HTCC2170 [CP002157]
1677020
1677096
+
Met
CAT
[Ensembl]
¡û
>C11105689
CP002534
Bacteroidota
Cellulophaga lytica DSM 7489 [CP002534]
1452898
1452822
-
Met
CAT
[Ensembl]
¡û
>W1511627009
LDAS01000001
Bacteroidota
Maribacter thermophilus HT7-2 [LDAS]
3082392
3082468
+
Met
CAT
[ENA]
¡û
>C121010166
CP003280
Bacteroidota
Aequorivita sublithincola DSM 14238 [CP003280]
1213805
1213731
-
Met
CAT
[Ensembl]
¡û
>W1610584562
LCTZ01000002
Bacteroidota
Allomuricauda eckloniae DK169 [LCTZ]
3031622
3031546
-
Met
CAT
[ENA]
¡û
>W1610900926
LRXL01000026
Bacteroidota
Cochleicola gelatinilyticus LPB0005 [LRXL]
862596
862672
+
Met
CAT
[ENA]
¡û
>W1610998187
LXIE01000023
Bacteroidota
Aequorivita soesokkakensis [LXIE]
14670
14596
-
Met
CAT
[ENA]
¡û
>WENV080358
ABCO01000001
Unidentified eubacterium SCB49
55379
55303
-
Met
CAT
[ENA]
>W1710514546
FNBA01000001
Bacteroidota
Ulvibacter litoralis [FNBA]
942155
942229
+
Met
CAT
[ENA]
¡û
>W1710529043
FNNS01000003
Bacteroidota
Aequorivita viscosa [FNNS]
23076
23002
-
Met
CAT
[ENA]
¡û
>W1710578219
FPBK01000001
Bacteroidota
Pustulibacterium marinum [FPBK]
196074
196000
-
Met
CAT
[ENA]
¡û
>W1710579965
FPIY01000003
Bacteroidota
Cellulophaga fucicola [FPIY]
271445
271369
-
Met
CAT
[ENA]
¡û
>W1710580279
FPJE01000016
Bacteroidota
Sinomicrobium oceani [FPJE]
111219
111295
+
Met
CAT
[ENA]
¡û
>W1710587807
FQYV01000003
Bacteroidota
Aequorivita viscosa [FQYV]
23045
22971
-
Met
CAT
[ENA]
¡û
>W1710703753
LCTZ01000002
Bacteroidota
Allomuricauda eckloniae DK169 [LCTZ]
3031622
3031546
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK