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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145588 (37 seq.)
>WENV180013884
FPIC01007134
[FPIC] soil metagenome; Soil
7049
6975
-
Arg
TCG
[ENA]
¢þ
>WENV181408645
OGCH01007372
[OGCH] hot springs metagenome; hot springs
344
270
-
Arg
TCG
[ENA]
¢þ
>W1511638147
LDNR01000009
Unclassified
bacterium JGI-5 [LDNR] JGI-5 [LDNR]
22771
22695
-
Arg
TCG
[ENA]
¡û
>W1610122417
CZVH01000026
Unclassified
Candidatus Kryptobacter tengchongensis JGI-20 [CZVH]
18852
18928
+
Arg
TCG
[ENA]
¡û
>W1610122440
CZVI01000001
Unclassified
Candidatus Kryptonium thompsoni JGI-8 [CZVI]
57819
57743
-
Arg
TCG
[ENA]
¡û
>W1610122545
CZVK01000053
Unclassified
Candidatus Kryptonium thompsoni JGI-6 [CZVK]
407
483
+
Arg
TCG
[ENA]
¡û
>W1610122599
CZVM01000002
Unclassified
Candidatus Kryptonium thompsoni JGI-15 [CZVM]
38118
38194
+
Arg
TCG
[ENA]
¡û
>W1610122666
CZVN01000081
Unclassified
Candidatus Kryptonium thompsoni JGI-13 [CZVN]
6124
6048
-
Arg
TCG
[ENA]
¡û
>W1610122686
CZVO01000025
Unclassified
Candidatus Kryptonium thompsoni JGI-10 [CZVO]
16140
16216
+
Arg
TCG
[ENA]
¡û
>W1610122806
CZVS01000086
Unclassified
Candidatus Kryptonium thompsoni JGI-5 [CZVS]
22771
22695
-
Arg
TCG
[ENA]
¡û
>W1610122813
CZVT01000033
Unclassified
Candidatus Kryptonium thompsoni JGI-17 [CZVT]
1029
1105
+
Arg
TCG
[ENA]
¡û
>W1610122944
CZVX01000012
Unclassified
Candidatus Kryptonium thompsoni JGI-11 [CZVX]
33477
33401
-
Arg
TCG
[ENA]
¡û
>W1610163214
FAON01000016
Unclassified
Candidatus Kryptobacter tengchongensis JGI-3 [FAON]
63028
63104
+
Arg
TCG
[ENA]
¡û
>W1610163229
FAOO01000004
Unclassified
Candidatus Thermokryptus mobilis JGI-1 [FAOO]
113285
113359
+
Arg
TCG
[ENA]
¡û
>W1610163303
FAOP01000008
Unclassified
Candidatus Kryptonium thompsoni JGI-4 [FAOP]
74616
74540
-
Arg
TCG
[ENA]
¡û
>W1610163355
FAOR01000038
Unclassified
Candidatus Kryptobacter tengchongensis JGI-2 [FAOR]
7372
7448
+
Arg
TCG
[ENA]
¡û
>W1610594392
LDXU01000004
Unclassified
Candidatus Thermokryptus mobilis [LDXU]
113285
113359
+
Arg
TCG
[ENA]
¡û
>W1610594441
LDXV01000075
Unclassified
Candidatus Kryptobacter tengchongensis [LDXV]
7372
7448
+
Arg
TCG
[ENA]
¡û
>W1610594490
LDXW01000010
Unclassified
Candidatus Kryptobacter tengchongensis [LDXW]
63028
63104
+
Arg
TCG
[ENA]
¡û
>W1610594543
LDXX01000008
Unclassified
Candidatus Kryptonium thompsoni [LDXX]
74616
74540
-
Arg
TCG
[ENA]
¡û
>W1710124084
CZVH01000026
Unclassified
Candidatus Kryptobacter tengchongensis JGI-20 [CZVH]
18852
18928
+
Arg
TCG
[ENA]
¡û
>W1710124107
CZVI01000001
Unclassified
Candidatus Kryptonium thompsoni JGI-8 [CZVI]
57819
57743
-
Arg
TCG
[ENA]
¡û
>W1710124212
CZVK01000053
Unclassified
Candidatus Kryptonium thompsoni JGI-6 [CZVK]
407
483
+
Arg
TCG
[ENA]
¡û
>W1710124266
CZVM01000002
Unclassified
Candidatus Kryptonium thompsoni JGI-15 [CZVM]
38118
38194
+
Arg
TCG
[ENA]
¡û
>W1710124333
CZVN01000081
Unclassified
Candidatus Kryptonium thompsoni JGI-13 [CZVN]
6124
6048
-
Arg
TCG
[ENA]
¡û
>W1710124353
CZVO01000025
Unclassified
Candidatus Kryptonium thompsoni JGI-10 [CZVO]
16140
16216
+
Arg
TCG
[ENA]
¡û
>W1710124473
CZVS01000086
Unclassified
Candidatus Kryptonium thompsoni JGI-5 [CZVS]
22771
22695
-
Arg
TCG
[ENA]
¡û
>W1710124480
CZVT01000033
Unclassified
Candidatus Kryptonium thompsoni JGI-17 [CZVT]
1029
1105
+
Arg
TCG
[ENA]
¡û
>W1710124611
CZVX01000012
Unclassified
Candidatus Kryptonium thompsoni JGI-11 [CZVX]
33477
33401
-
Arg
TCG
[ENA]
¡û
>W1710164881
FAON01000016
Unclassified
Candidatus Kryptobacter tengchongensis JGI-3 [FAON]
63028
63104
+
Arg
TCG
[ENA]
¡û
>W1710164896
FAOO01000004
Unclassified
Candidatus Thermokryptus mobilis JGI-1 [FAOO]
113285
113359
+
Arg
TCG
[ENA]
¡û
>W1710164970
FAOP01000008
Unclassified
Candidatus Kryptonium thompsoni JGI-4 [FAOP]
74616
74540
-
Arg
TCG
[ENA]
¡û
>W1710165022
FAOR01000038
Unclassified
Candidatus Kryptobacter tengchongensis JGI-2 [FAOR]
7372
7448
+
Arg
TCG
[ENA]
¡û
>W1710713844
LDXU01000004
Unclassified
Candidatus Thermokryptus mobilis [LDXU]
113285
113359
+
Arg
TCG
[ENA]
¡û
>W1710713893
LDXV01000075
Unclassified
Candidatus Kryptobacter tengchongensis [LDXV]
7372
7448
+
Arg
TCG
[ENA]
¡û
>W1710713942
LDXW01000010
Unclassified
Candidatus Kryptobacter tengchongensis [LDXW]
63028
63104
+
Arg
TCG
[ENA]
¡û
>W1710713995
LDXX01000008
Unclassified
Candidatus Kryptonium thompsoni [LDXX]
74616
74540
-
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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