This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145633 (129 seq.)
>W1710776340
LIZN01000007
Actinomycetota
Thermobifida halotolerans [LIZN]
192783
192857
+
Pro
GGG
[ENA]
¡û
>W1710784449
LJGY01000020
Actinomycetota
Streptomyces nanshensis [LJGY]
73193
73117
-
Pro
GGG
[ENA]
¡û
>W1710889833
LNBE01000003
Actinomycetota
Streptomyces roseifaciens MBT76 [LNBE]
751144
751218
+
Pro
GGG
[ENA]
¡û
>W1711183486
LWLB01000009
Actinomycetota
Nocardiopsis sp. TSRI0078 [LWLB]
70817
70891
+
Pro
GGG
[ENA]
¡û
>W1711183514
LWLB01000036
Actinomycetota
Nocardiopsis sp. TSRI0078 [LWLB]
253466
253392
-
Pro
GGG
[ENA]
¡û
>W1711282519
LZNS01000001
Actinomycetota
Streptomyces sp. MP131-18 [LZNS]
121971
122045
+
Pro
GGG
[ENA]
¡û
>W1711491862
MKJY01000017
Actinomycetota
Actinomadura sp. CNU-125 [MKJY]
18975
18901
-
Pro
GGG
[ENA]
¡û
>W1711492081
MKKC01000074
Actinomycetota
Nocardiopsis sp. CNR-923 [MKKC]
53903
53829
-
Pro
GGG
[ENA]
¡û
>W1711492106
MKKC01000139
Actinomycetota
Nocardiopsis sp. CNR-923 [MKKC]
2040
1966
-
Pro
GGG
[ENA]
¡û
>W1711792291
MWJN01000103
Actinomycetota
Microbispora sp. GKU 823 [MWJN]
17751
17825
+
Pro
GGG
[ENA]
¡û
>C171070723
CP017965
Actinomycetota
Nocardiopsis dassonvillei NOCA502F [CP017965]
2027315
2027389
+
Pro
GGG
-
¡û
>C171070724
CP017965
Actinomycetota
Nocardiopsis dassonvillei NOCA502F [CP017965]
2281019
2281093
+
Pro
GGG
-
¡û
>C171122533
CP021744
Actinomycetota
Streptomyces albireticuli MDJK11 [CP021744]
6202344
6202268
-
Pro
GGG
-
¡û
>C171122567
CP021744
Actinomycetota
Streptomyces albireticuli MDJK11 [CP021744]
1230190
1230116
-
Pro
GGG
-
¡û
>W131053588
ANAE01000127
Actinomycetota
Nocardiopsis prasina DSM 43845 [ANAE]
8974
9050
+
Pro
GGG
[ENA]
¡û
>W131053589
ANAE01000127
Actinomycetota
Nocardiopsis prasina DSM 43845 [ANAE]
24787
24861
+
Pro
GGG
[ENA]
¡û
>W131054604
ANAW01000172
Actinomycetota
Nocardiopsis synnemataformans DSM 44143 [ANAW]
46906
46980
+
Pro
GGG
[ENA]
¡û
>W131054605
ANAW01000189
Actinomycetota
Nocardiopsis synnemataformans DSM 44143 [ANAW]
7419
7345
-
Pro
GGG
[ENA]
¡û
>W131054798
ANBA01000009
Actinomycetota
Nocardiopsis ganjiahuensis DSM 45031 [ANBA]
436611
436537
-
Pro
GGG
[ENA]
¡û
>W131054799
ANBA01000009
Actinomycetota
Nocardiopsis ganjiahuensis DSM 45031 [ANBA]
342569
342495
-
Pro
GGG
[ENA]
¡û
>W131173438
ARHR01000069
Actinomycetota
Streptomycetaceae bacterium CNQ766 CNQ766 [ARHR]
56070
55996
-
Pro
GGG
[ENA]
¡û
>W131204715
ATCE01000044
Actinomycetota
Streptomyces sp. HPH0547 [ATCE]
95872
95796
-
Pro
GGG
[ENA]
¡û
>W131053478
ANAC01000010
Actinomycetota
Nocardiopsis alba DSM 43377 [ANAC]
115338
115264
-
Pro
GGG
[ENA]
¡û
>W131053479
ANAC01000010
Actinomycetota
Nocardiopsis alba DSM 43377 [ANAC]
104875
104801
-
Pro
GGG
[ENA]
¡û
>W131053565
ANAD01000250
Actinomycetota
Nocardiopsis halophila DSM 44494 [ANAD]
9009
8935
-
Pro
GGG
[ENA]
¡û
>W131054307
ANAS01000031
Actinomycetota
Nocardiopsis baichengensis YIM 90130 [ANAS]
33837
33763
-
Pro
GGG
[ENA]
¡û
>W131054653
ANAX01000292
Actinomycetota
Nocardiopsis halotolerans DSM 44410 [ANAX]
3200
3274
+
Pro
GGG
[ENA]
¡û
>W131054861
ANBB01000038
Actinomycetota
Nocardiopsis potens DSM 45234 [ANBB]
86575
86649
+
Pro
GGG
[ENA]
¡û
>W131054894
ANBB01000101
Actinomycetota
Nocardiopsis potens DSM 45234 [ANBB]
8503
8429
-
Pro
GGG
[ENA]
¡û
>W131054903
ANBC01000091
Actinomycetota
Nocardiopsis lucentensis DSM 44048 [ANBC]
10842
10916
+
Pro
GGG
[ENA]
¡û
>W131054979
ANBD01000066
Actinomycetota
Nocardiopsis alkaliphila YIM 80379 [ANBD]
7791
7717
-
Pro
GGG
[ENA]
¡û
>W131054980
ANBD01000067
Actinomycetota
Nocardiopsis alkaliphila YIM 80379 [ANBD]
10946
10872
-
Pro
GGG
[ENA]
¡û
>W131055178
ANBH01000007
Actinomycetota
Nocardiopsis chromatogenes YIM 90109 [ANBH]
41488
41562
+
Pro
GGG
[ENA]
¡û
>W131055179
ANBH01000007
Actinomycetota
Nocardiopsis chromatogenes YIM 90109 [ANBH]
45123
45049
-
Pro
GGG
[ENA]
¡û
>W131170496
ARFO01000018
Actinomycetota
Actinomadura flavalba DSM 45200 [ARFO]
73049
73125
+
Pro
GGG
[ENA]
¡û
>W131179359
ARMI01000041
Actinomycetota
Nocardiopsis sp. CNS-639 CNS639 [ARMI]
36902
36828
-
Pro
GGG
[ENA]
¡û
>W131179360
ARMI01000042
Actinomycetota
Nocardiopsis sp. CNS-639 CNS639 [ARMI]
80908
80982
+
Pro
GGG
[ENA]
¡û
>W131179869
ARMS01000041
Actinomycetota
Actinomadura atramentaria DSM 43919 [ARMS]
94579
94653
+
Pro
GGG
[ENA]
¡û
>W131234782
AULB01000011
Actinomycetota
Actinomadura rifamycini DSM 43936 [AULB]
179548
179474
-
Pro
GGG
[ENA]
¡û
>WENV180261234
OBEQ011273762
[OBEQ] groundwater metagenome; groundwater
6954
7028
+
Pro
GGG
[ENA]
¢þ
>w001926
AAAQ02000012
Actinomycetota
Thermobifida fusca [AAAQ]
32468
32544
+
Pro
GGG
[ENA]
¡û
>W141135768
AWEV01000071
Actinomycetota
Microbispora sp. ATCC PTA-5024 [AWEV]
73434
73360
-
Pro
GGG
[ENA]
¡û
>W141140093
AWOO02000070
Actinomycetota
Actinomadura madurae LIID-AJ290 [AWOO]
43667
43741
+
Pro
GGG
[ENA]
¡û
>WENV181609367
OGLN01021958
[OGLN] metagenome; Human gut stool
1360
1286
-
Pro
GGG
[ENA]
¢þ
>W141219708
AZXF01000044
Actinomycetota
Nocardiopsis sp. CNT312 [AZXF]
5790
5864
+
Pro
GGG
[ENA]
¡û
>W141219709
AZXF01000044
Actinomycetota
Nocardiopsis sp. CNT312 [AZXF]
12103
12177
+
Pro
GGG
[ENA]
¡û
>W141236318
BAZE01000001
Actinomycetota
Nocardiopsis alba TP-A0876 [BAZE]
293321
293247
-
Pro
GGG
[ENA]
¡û
>W141236319
BAZE01000001
Actinomycetota
Nocardiopsis alba TP-A0876 [BAZE]
282861
282787
-
Pro
GGG
[ENA]
¡û
>W141275758
JADG01000005
Actinomycetota
Actinomadura oligospora ATCC 43269 [JADG]
95114
95190
+
Pro
GGG
[ENA]
¡û
>WENV183748553
PPFU01052019
[PPFU] hypolithon metagenome; Antarctic Hypolithon
83
9
-
Pro
GGG
[ENA]
¢þ
>C181064851
CP022434
Actinomycetota
Nocardiopsis dassonvillei HZNU_N_1 [CP022434]
2024678
2024752
+
Pro
GGG
-
¡û
>C181064852
CP022434
Actinomycetota
Nocardiopsis dassonvillei HZNU_N_1 [CP022434]
2249344
2249418
+
Pro
GGG
-
¡û
>C181200652
CP031455
Actinomycetota
Streptomyces olivoreticuli subsp. olivoreticuli ATCC 31159 [CP031455]
7767243
7767319
+
Pro
GGG
-
¡û
>C191212900
LR134501
Actinomycetota
Nocardiopsis dassonvillei NCTC10488 [LR134501]
6112315
6112389
+
Pro
GGG
-
¡û
>C191212901
LR134501
Actinomycetota
Nocardiopsis dassonvillei NCTC10488 [LR134501]
6350771
6350845
+
Pro
GGG
-
¡û
>W09109575
ABUI01000026
Actinomycetota
Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 [ABUI]
51704
51630
-
Pro
GGG
[ENA]
¡û
>W09109576
ABUI01000027
Actinomycetota
Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 [ABUI]
39586
39512
-
Pro
GGG
[ENA]
¡û
>W141758061
JNYJ01000011
Actinomycetota
Dactylosporangium aurantiacum [JNYJ]
48454
48528
+
Pro
GGG
[ENA]
¡û
>W141759862
JNZQ01000019
Actinomycetota
Microbispora rosea subsp. nonnitritogenes [JNZQ]
63269
63195
-
Pro
GGG
[ENA]
¡û
>W141760204
JNZX01000052
Actinomycetota
Dactylosporangium aurantiacum [JNZX]
4996
5070
+
Pro
GGG
[ENA]
¡û
>W141767123
JOEK01000020
Actinomycetota
Streptomyces avicenniae [JOEK]
84520
84446
-
Pro
GGG
[ENA]
¡û
>W141768701
JOFJ01000013
Actinomycetota
Spirillospora albida [JOFJ]
98540
98614
+
Pro
GGG
[ENA]
¡û
>W141770359
JOGK01000041
Actinomycetota
Streptomyces sp. NRRL F-5639 [JOGK]
30020
30096
+
Pro
GGG
[ENA]
¡û
>W1910547243
FZNP01000028
Actinomycetota
Actinomadura mexicana DSM 44485 [FZNP]
17702
17776
+
Pro
GGG
[ENA]
¡û
>W1910548693
FZOR01000059
Actinomycetota
Actinomadura meyerae DSM 44715 [FZOR]
17418
17492
+
Pro
GGG
[ENA]
¡û
>W1910575985
JRUV01000282
Actinomycetota
Thermobifida halotolerans DSM 44931 [JRUV]
5060
5134
+
Pro
GGG
[ENA]
¡û
>W1910803650
MTBP01000002
Actinomycetota
Actinomadura rubteroloni 5·î2Æü [MTBP]
83788
83862
+
Pro
GGG
[ENA]
¡û
>W1910916477
NHZO01000168
Actinomycetota
Streptomyces cinnamoneus ATCC 21532 [NHZO]
735251
735325
+
Pro
GGG
[ENA]
¡û
>W1911678939
QHJN01000006
Actinomycetota
Actinomadura sp. WAC 06369 [QHJN]
56792
56718
-
Pro
GGG
[ENA]
¡û
>W1911709926
QPNC01000009
Actinomycetota
Nocardiopsis sp. FIRDI 009 [QPNC]
388754
388828
+
Pro
GGG
[ENA]
¡û
>W1911813355
QZEY01000006
Actinomycetota
Bailinhaonella thermotolerans YIM 75507 [QZEY]
255081
255007
-
Pro
GGG
[ENA]
¡û
>W1810046828
NYMS01000006
Actinomycetota
Glycomyces fuscus TRM 49117 [NYMS]
11309
11235
-
Pro
GGG
[ENA]
¡û
>W1810046862
NYMS01000051
Actinomycetota
Glycomyces fuscus TRM 49117 [NYMS]
57951
58025
+
Pro
GGG
[ENA]
¡û
>W1810089704
PGEW01000002
Actinomycetota
Streptomyces sp. CNZ306 [PGEW]
1603937
1604011
+
Pro
GGG
[ENA]
¡û
>W1810357001
PVNI01000018
Actinomycetota
Actinomadura viridilutea DSM 44433 [PVNI]
26022
25948
-
Pro
GGG
[ENA]
¡û
>W1810570475
QEIM01000069
Actinomycetota
Marinitenerispora sediminis TPS83 [QEIM]
8167
8093
-
Pro
GGG
[ENA]
¡û
>W1810570517
QEIN01000085
Actinomycetota
Marinitenerispora sediminis TPS81 [QEIN]
7967
7893
-
Pro
GGG
[ENA]
¡û
>W1810570587
QEIO01000091
Actinomycetota
Marinitenerispora sediminis TPS16 [QEIO]
7277
7203
-
Pro
GGG
[ENA]
¡û
>W1810594525
QFZU02000065
Actinomycetota
Microbispora triticiradicis NEAU-HRDPA2-9 [QFZU]
6709
6635
-
Pro
GGG
[ENA]
¡û
>W1810698072
QLYX01000002
Actinomycetota
Actinomadura craniellae LHW63021 [QLYX]
482637
482563
-
Pro
GGG
[ENA]
¡û
>W1810861285
QTTT01000001
Actinomycetota
Thermomonospora umbrina DSM 43927 [QTTT]
6102462
6102387
-
Pro
GGG
[ENA]
¡û
>W1810888914
QURH01001041
Actinomycetota
Actinomadura logoneensis NEAU-G17 [QURH]
15957
15881
-
Pro
GGG
[ENA]
¡û
>C10109676
CP002040
Actinomycetota
Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 [CP002040, CP002041]
1208916
1208990
+
Pro
GGG
[Ensembl]
¡û
>C10109677
CP002040
Actinomycetota
Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 [CP002040, CP002041]
1447373
1447447
+
Pro
GGG
[Ensembl]
¡û
>W1511555676
JZWZ01000108
Actinomycetota
Streptomyces sp. NRRL B-1568 [JZWZ]
4023
3949
-
Pro
GGG
[ENA]
¡û
>W1511584462
LAVK01000429
Actinomycetota
Streptomyces sp. SBT349 [LAVK]
217
291
+
Pro
GGG
[ENA]
¡û
>W1511656788
LEKI01000004
Actinomycetota
Nocardiopsis sp. RV163 [LEKI]
70566
70640
+
Pro
GGG
[ENA]
¡û
>W1511656834
LEKI01000126
Actinomycetota
Nocardiopsis sp. RV163 [LEKI]
12409
12483
+
Pro
GGG
[ENA]
¡û
>W1511697714
LGEC01000092
Actinomycetota
Nocardiopsis sp. NRRL B-16309 [LGEC]
43420
43494
+
Pro
GGG
[ENA]
¡û
>W1511697715
LGEC01000092
Actinomycetota
Nocardiopsis sp. NRRL B-16309 [LGEC]
46094
46168
+
Pro
GGG
[ENA]
¡û
>W1610050914
BBGI01000026
Actinomycetota
Sphaerimonospora mesophila NBRC 14179 = JCM 3151 [BBGI]
2305
2379
+
Pro
GGG
[ENA]
¡û
>W1610060644
BCBX01000049
Actinomycetota
Microbispora sp. GMKU363 [BCBX]
113326
113400
+
Pro
GGG
[ENA]
¡û
>W1610067464
BCQP01000027
Actinomycetota
Actinomadura chibensis NBRC 106107 [BCQP]
61158
61084
-
Pro
GGG
[ENA]
¡û
>W1610067578
BCQR01000057
Actinomycetota
Actinomadura kijaniata NBRC 14229 [BCQR]
329
255
-
Pro
GGG
[ENA]
¡û
>W1610067590
BCQR01000080
Actinomycetota
Actinomadura kijaniata NBRC 14229 [BCQR]
44385
44461
+
Pro
GGG
[ENA]
¡û
>W1610067664
BCQS01000026
Actinomycetota
Actinomadura latina NBRC 106108 [BCQS]
80592
80518
-
Pro
GGG
[ENA]
¡û
>W1610067720
BCQT01000016
Actinomycetota
Actinomadura macra NBRC 14102 [BCQT]
18261
18335
+
Pro
GGG
[ENA]
¡û
>W1610067775
BCQU01000048
Actinomycetota
Actinomadura rubrobrunea NBRC 15275 [BCQU]
31738
31664
-
Pro
GGG
[ENA]
¡û
>W1610068453
BCRI01000224
Actinomycetota
Sphaerimonospora mesophila NBRC 14179 = JCM 3151 [BCRI]
5121
5047
-
Pro
GGG
[ENA]
¡û
>W1610068542
BCRK01000078
Actinomycetota
Nocardiopsis trehalosi NBRC 14201 [BCRK]
4312
4238
-
Pro
GGG
[ENA]
¡û
>W1610068724
BCRO01000018
Actinomycetota
Actinomadura hibisca NBRC 15177 [BCRO]
107896
107822
-
Pro
GGG
[ENA]
¡û
>W1610068889
BCRR01000007
Actinomycetota
Nocardiopsis alborubida subsp. albirubida NBRC 13392 [BCRR]
86663
86737
+
Pro
GGG
[ENA]
¡û
>C131006728
CP003788
Actinomycetota
Nocardiopsis alba ATCC BAA-2165 [CP003788]
4105658
4105732
+
Pro
GGG
[Ensembl]
¡û
>C131006729
CP003788
Actinomycetota
Nocardiopsis alba ATCC BAA-2165 [CP003788]
4117889
4117963
+
Pro
GGG
[Ensembl]
¡û
>W1610612146
LGEM01000004
Actinomycetota
Thermobifida cellulosilytica TB100 [LGEM]
17439
17363
-
Pro
GGG
[ENA]
¡û
>W1610633286
LIQP01000333
Actinomycetota
Streptomyces albus gibsonii [LIQP]
103
179
+
Pro
GGG
[ENA]
¡û
>W1610640446
LIZN01000007
Actinomycetota
Thermobifida halotolerans [LIZN]
192783
192857
+
Pro
GGG
[ENA]
¡û
>W1610750211
LNBE01000003
Actinomycetota
Streptomyces roseifaciens MBT76 [LNBE]
751144
751218
+
Pro
GGG
[ENA]
¡û
>W1610750250
LNBE01000004
Actinomycetota
Streptomyces roseifaciens MBT76 [LNBE]
1389722
1389646
-
Pro
GGG
[ENA]
¡û
>W1710047313
BBGI01000026
Actinomycetota
Sphaerimonospora mesophila NBRC 14179 = JCM 3151 [BBGI]
2305
2379
+
Pro
GGG
[ENA]
¡û
>W1710057899
BCBX01000049
Actinomycetota
Microbispora sp. GMKU363 [BCBX]
113326
113400
+
Pro
GGG
[ENA]
¡û
>W1710064837
BCQP01000027
Actinomycetota
Actinomadura chibensis NBRC 106107 [BCQP]
61158
61084
-
Pro
GGG
[ENA]
¡û
>W1710064951
BCQR01000057
Actinomycetota
Actinomadura kijaniata NBRC 14229 [BCQR]
329
255
-
Pro
GGG
[ENA]
¡û
>W1710064963
BCQR01000080
Actinomycetota
Actinomadura kijaniata NBRC 14229 [BCQR]
44385
44461
+
Pro
GGG
[ENA]
¡û
>W1710065037
BCQS01000026
Actinomycetota
Actinomadura latina NBRC 106108 [BCQS]
80592
80518
-
Pro
GGG
[ENA]
¡û
>W1710065093
BCQT01000016
Actinomycetota
Actinomadura macra NBRC 14102 [BCQT]
18261
18335
+
Pro
GGG
[ENA]
¡û
>W1710065148
BCQU01000048
Actinomycetota
Actinomadura rubrobrunea NBRC 15275 [BCQU]
31738
31664
-
Pro
GGG
[ENA]
¡û
>W1710065826
BCRI01000224
Actinomycetota
Sphaerimonospora mesophila NBRC 14179 = JCM 3151 [BCRI]
5121
5047
-
Pro
GGG
[ENA]
¡û
>W1710065915
BCRK01000078
Actinomycetota
Nocardiopsis trehalosi NBRC 14201 [BCRK]
4312
4238
-
Pro
GGG
[ENA]
¡û
>W1710066097
BCRO01000018
Actinomycetota
Actinomadura hibisca NBRC 15177 [BCRO]
107896
107822
-
Pro
GGG
[ENA]
¡û
>W1710066262
BCRR01000007
Actinomycetota
Nocardiopsis alborubida subsp. albirubida NBRC 13392 [BCRR]
86663
86737
+
Pro
GGG
[ENA]
¡û
>W1710503719
FMHI01000022
Actinomycetota
Streptomyces sp. WMMB 322 [FMHI]
23899
23825
-
Pro
GGG
[ENA]
¡û
>W1710570687
FOVH01000016
Actinomycetota
Actinomadura madurae [FOVH]
60687
60761
+
Pro
GGG
[ENA]
¡û
>W1710576290
FOZX01000007
Actinomycetota
Saccharopolyspora flava [FOZX]
138579
138653
+
Pro
GGG
[ENA]
¡û
>W1710597663
FTNI01000028
Actinomycetota
Microbispora rosea [FTNI]
59664
59590
-
Pro
GGG
[ENA]
¡û
>W1710600689
FUWS01000001
Actinomycetota
Marinactinospora thermotolerans DSM 45154 [FUWS]
426728
426802
+
Pro
GGG
[ENA]
¡û
>W1710619331
JHEJ01000067
Actinomycetota
Streptomyces nanshensis [JHEJ]
3007411
3007487
+
Pro
GGG
[ENA]
¡û
>W1710733652
LGEM01000004
Actinomycetota
Thermobifida cellulosilytica TB100 [LGEM]
17439
17363
-
Pro
GGG
[ENA]
¡û
>W1710767718
LIQP01000333
Actinomycetota
Streptomyces albus gibsonii [LIQP]
103
179
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK