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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145963 (8 seq.)
>WENV183515802
OMKS01094454
[OMKS] sediment metagenome; hot spring sediment
600
526
-
Gly
GCC
[ENA]
¢þ
>WENV170600115
FUWD010108391
[FUWD] metagenome; unknown
748
672
-
Gly
TCC
[ENA]
¢þ
>WENV170600155
FUWD010111227
[FUWD] metagenome; unknown
367
291
-
Gly
TCC
[ENA]
¢þ
>WENV170618339
FUWD012963419
[FUWD] metagenome; unknown
668
592
-
Gly
TCC
[ENA]
¢þ
>SRA1019299
SRR035082.431787
454 Sequencing (SRP001803)
272
348
+
Gly
TCC
[SRA]
>SRA1025529
SRR035085.34324
454 Sequencing (SRP001806)
247
323
+
Gly
TCC
[SRA]
>SRA1044839
SRR035092.354917
454 Sequencing (SRP001813)
56
132
+
Gly
TCC
[SRA]
>SRA1048342
SRR035094.151521
454 Sequencing (SRP001815)
377
301
-
Gly
TCC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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