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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146162 (7 seq.)
>WENV170600264
FUWD010117099
[FUWD] metagenome; unknown
166
242
+
Ala
GGC
[ENA]
¢þ
>WENV170618450
FUWD012969201
[FUWD] metagenome; unknown
168
244
+
Ala
GGC
[ENA]
¢þ
>WENV170626203
FUWD013216372
[FUWD] metagenome; unknown
4368
4444
+
Ala
GGC
[ENA]
¢þ
>SRA1017627
SRR035082.170890
454 Sequencing (SRP001803)
345
269
-
Ala
GGC
[SRA]
>SRA1019702
SRR035082.507411
454 Sequencing (SRP001803)
14
90
+
Ala
GGC
[SRA]
>SRA1026760
SRR035085.283696
454 Sequencing (SRP001806)
323
399
+
Ala
GGC
[SRA]
>SRA1043755
SRR035092.170932
454 Sequencing (SRP001813)
166
242
+
Ala
GGC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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