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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146194 (14 seq.)
>WENV180097403
MTBK01187016
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
666
592
-
Asp
GTC
[ENA]
¢þ
>WENV180346830
OBLN01331385
[OBLN] sediment metagenome; sediment
58
132
+
Asp
GTC
[ENA]
¢þ
>WENV170605105
FUWD010449582
[FUWD] metagenome; unknown
437
363
-
Asp
GTC
[ENA]
¢þ
>WENV170622257
FUWD013094427
[FUWD] metagenome; unknown
916
840
-
Asp
GTC
[ENA]
¢þ
>WENV170630478
FUWD013309161
[FUWD] metagenome; unknown
916
840
-
Asp
GTC
[ENA]
¢þ
>SRA1031270
SRR035087.403480
454 Sequencing (SRP001808)
314
240
-
Asp
GTC
[SRA]
>SRA1031772
SRR035087.484915
454 Sequencing (SRP001808)
340
264
-
Asp
GTC
[SRA]
>SRA1034265
SRR035089.41525
454 Sequencing (SRP001810)
381
305
-
Asp
GTC
[SRA]
>SRA1034470
SRR035089.101941
454 Sequencing (SRP001810)
522
448
-
Asp
GTC
[SRA]
>SRA1034859
SRR035089.186467
454 Sequencing (SRP001810)
110
186
+
Asp
GTC
[SRA]
>SRA1035213
SRR035089.261890
454 Sequencing (SRP001810)
522
448
-
Asp
GTC
[SRA]
>SRA1035224
SRR035089.263639
454 Sequencing (SRP001810)
343
269
-
Asp
GTC
[SRA]
>SRA1041850
SRR035091.304813
454 Sequencing (SRP001812)
44
118
+
Asp
GTC
[SRA]
>SRA1049289
SRR035095.50795
454 Sequencing (SRP001816)
273
199
-
Asp
GTC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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