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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146283 (134 seq.)
>W1711136044
LUZT01000003
Chlorobiota
Chlorobiales bacterium Clorobi_01 [LUZT]
18606
18529
-
Val
TAC
[ENA]
¡û
>W1711167296
LVWG01000016
Chlorobiota
Pelodictyon luteolum [LVWG]
113694
113768
+
Val
TAC
[ENA]
¡û
>C171060547
CP017305
Chlorobiota
Chlorobaculum limnaeum DSM 1677 [CP017305]
51374
51448
+
Val
TAC
-
¡û
>C171113982
CP020873
Chlorobiota
Prosthecochloris sp. HL-130-GSB [CP020873]
100953
101029
+
Val
TAC
-
¡û
>C007001
AE006470
Chlorobiota
Chlorobaculum tepidum TLS [AE006470]
120624
120700
+
Val
TAC
[Ensembl]
¡û
>C016729
CP000096
Chlorobiota
Pelodictyon luteolum DSM 273 [CP000096]
82719
82792
+
Val
TAC
[Ensembl]
¡û
>C018237
CP000607
Chlorobiota
Chlorobium phaeovibrioides [CP000607]
155961
156037
+
Val
TAC
[Ensembl]
¡û
>WENV181232310
OFEN01000015
[OFEN] coral metagenome; NA
29534
29460
-
Val
TAC
[ENA]
¢þ
>WENV181232321
OFEN01000035
[OFEN] coral metagenome; NA
11980
11906
-
Val
TAC
[ENA]
¢þ
>WENV181232409
OFEN01021042
[OFEN] coral metagenome; NA
745
671
-
Val
TAC
[ENA]
¢þ
>WENV183512856
OMKS01001602
[OMKS] sediment metagenome; hot spring sediment
7502
7578
+
Val
TAC
[ENA]
¢þ
>WENV183812096
PYLN01000005
[PYLN] freshwater metagenome; meromictic lake
32585
32661
+
Val
TAC
[ENA]
¢þ
>WENV170613747
FUWD012818049
[FUWD] metagenome; unknown
27868
27942
+
Val
TAC
[ENA]
¢þ
>WENV170613771
FUWD012819304
[FUWD] metagenome; unknown
13402
13326
-
Val
TAC
[ENA]
¢þ
>WENV170620155
FUWD013026629
[FUWD] metagenome; unknown
5710
5633
-
Val
TAC
[ENA]
¢þ
>WENV170628291
FUWD013244462
[FUWD] metagenome; unknown
5710
5633
-
Val
TAC
[ENA]
¢þ
>W09103359
AAJD01000008
Chlorobiota
Chlorobium phaeovibrioides DSM 265 [AAJD]
10274
10350
+
Val
TAC
[ENA]
¡û
>C181068758
CP022571
Chlorobiota
Prosthecochloris sp. GSB1 TY Vent [CP022571]
106945
107019
+
Val
TAC
-
¡û
>W1810062184
PDNX01000007
Chlorobiota
Prosthecochloris sp. ZM [PDNX]
2284994
2284918
-
Val
TAC
[ENA]
¡û
>W1810062228
PDNY01000012
Chlorobiota
Prosthecochloris sp. ZM_2 [PDNY]
25773
25697
-
Val
TAC
[ENA]
¡û
>SRA1018642
SRR035082.326690
454 Sequencing (SRP001803)
88
164
+
Val
TAC
[SRA]
>SRA1019935
SRR035083.24967
454 Sequencing (SRP001804)
183
259
+
Val
TAC
[SRA]
>SRA1020241
SRR035083.80381
454 Sequencing (SRP001804)
404
328
-
Val
TAC
[SRA]
>SRA1020255
SRR035083.84033
454 Sequencing (SRP001804)
417
493
+
Val
TAC
[SRA]
>SRA1020351
SRR035083.100739
454 Sequencing (SRP001804)
336
412
+
Val
TAC
[SRA]
>SRA1020403
SRR035083.109130
454 Sequencing (SRP001804)
146
222
+
Val
TAC
[SRA]
>SRA1020466
SRR035083.119450
454 Sequencing (SRP001804)
165
241
+
Val
TAC
[SRA]
>SRA1020514
SRR035083.128645
454 Sequencing (SRP001804)
391
315
-
Val
TAC
[SRA]
>SRA1020518
SRR035083.128958
454 Sequencing (SRP001804)
155
231
+
Val
TAC
[SRA]
>SRA1020541
SRR035083.131812
454 Sequencing (SRP001804)
186
262
+
Val
TAC
[SRA]
>SRA1020562
SRR035083.135220
454 Sequencing (SRP001804)
48
124
+
Val
TAC
[SRA]
>SRA1020697
SRR035083.153322
454 Sequencing (SRP001804)
125
201
+
Val
TAC
[SRA]
>SRA1020729
SRR035083.156529
454 Sequencing (SRP001804)
186
110
-
Val
TAC
[SRA]
>SRA1020843
SRR035083.172311
454 Sequencing (SRP001804)
210
286
+
Val
TAC
[SRA]
>SRA1020870
SRR035083.175853
454 Sequencing (SRP001804)
94
18
-
Val
TAC
[SRA]
>SRA1020872
SRR035083.176327
454 Sequencing (SRP001804)
294
218
-
Val
TAC
[SRA]
>SRA1021076
SRR035083.205821
454 Sequencing (SRP001804)
112
188
+
Val
TAC
[SRA]
>SRA1021089
SRR035083.206912
454 Sequencing (SRP001804)
391
315
-
Val
TAC
[SRA]
>SRA1021157
SRR035083.217608
454 Sequencing (SRP001804)
284
360
+
Val
TAC
[SRA]
>SRA1021168
SRR035083.219371
454 Sequencing (SRP001804)
148
72
-
Val
TAC
[SRA]
>SRA1021248
SRR035083.228525
454 Sequencing (SRP001804)
184
260
+
Val
TAC
[SRA]
>SRA1021278
SRR035083.234738
454 Sequencing (SRP001804)
89
165
+
Val
TAC
[SRA]
>SRA1021303
SRR035083.239513
454 Sequencing (SRP001804)
240
316
+
Val
TAC
[SRA]
>SRA1021358
SRR035083.249729
454 Sequencing (SRP001804)
295
219
-
Val
TAC
[SRA]
>SRA1021380
SRR035083.253001
454 Sequencing (SRP001804)
294
218
-
Val
TAC
[SRA]
>SRA1021447
SRR035083.260253
454 Sequencing (SRP001804)
461
385
-
Val
TAC
[SRA]
>SRA1021460
SRR035083.261895
454 Sequencing (SRP001804)
255
179
-
Val
TAC
[SRA]
>SRA1021605
SRR035083.280907
454 Sequencing (SRP001804)
255
179
-
Val
TAC
[SRA]
>SRA1021614
SRR035083.282329
454 Sequencing (SRP001804)
83
10
-
Val
TAC
[SRA]
>SRA1021677
SRR035083.291546
454 Sequencing (SRP001804)
225
301
+
Val
TAC
[SRA]
>SRA1021729
SRR035083.298065
454 Sequencing (SRP001804)
49
125
+
Val
TAC
[SRA]
>SRA1021756
SRR035083.303285
454 Sequencing (SRP001804)
434
510
+
Val
TAC
[SRA]
>SRA1021778
SRR035083.307667
454 Sequencing (SRP001804)
268
344
+
Val
TAC
[SRA]
>SRA1021888
SRR035083.325187
454 Sequencing (SRP001804)
88
164
+
Val
TAC
[SRA]
>SRA1022062
SRR035083.347528
454 Sequencing (SRP001804)
89
165
+
Val
TAC
[SRA]
>SRA1022168
SRR035083.362289
454 Sequencing (SRP001804)
236
312
+
Val
TAC
[SRA]
>SRA1022241
SRR035083.373404
454 Sequencing (SRP001804)
50
126
+
Val
TAC
[SRA]
>SRA1022294
SRR035083.383987
454 Sequencing (SRP001804)
186
262
+
Val
TAC
[SRA]
>SRA1022316
SRR035083.387834
454 Sequencing (SRP001804)
367
443
+
Val
TAC
[SRA]
>SRA1022406
SRR035083.401450
454 Sequencing (SRP001804)
187
263
+
Val
TAC
[SRA]
>SRA1022497
SRR035083.414083
454 Sequencing (SRP001804)
164
240
+
Val
TAC
[SRA]
>SRA1022501
SRR035083.414577
454 Sequencing (SRP001804)
176
100
-
Val
TAC
[SRA]
>SRA1022530
SRR035083.421468
454 Sequencing (SRP001804)
37
113
+
Val
TAC
[SRA]
>SRA1022532
SRR035083.421749
454 Sequencing (SRP001804)
276
200
-
Val
TAC
[SRA]
>SRA1022580
SRR035083.428510
454 Sequencing (SRP001804)
194
270
+
Val
TAC
[SRA]
>SRA1022614
SRR035083.433320
454 Sequencing (SRP001804)
258
182
-
Val
TAC
[SRA]
>SRA1022732
SRR035083.450008
454 Sequencing (SRP001804)
111
187
+
Val
TAC
[SRA]
>SRA1022736
SRR035083.450766
454 Sequencing (SRP001804)
349
273
-
Val
TAC
[SRA]
>SRA1022739
SRR035083.451993
454 Sequencing (SRP001804)
127
203
+
Val
TAC
[SRA]
>SRA1022770
SRR035083.456811
454 Sequencing (SRP001804)
128
204
+
Val
TAC
[SRA]
>SRA1022777
SRR035083.459092
454 Sequencing (SRP001804)
335
411
+
Val
TAC
[SRA]
>SRA1022959
SRR035083.494719
454 Sequencing (SRP001804)
337
413
+
Val
TAC
[SRA]
>SRA1030047
SRR035087.220738
454 Sequencing (SRP001808)
109
33
-
Val
TAC
[SRA]
>SRA1030160
SRR035087.235122
454 Sequencing (SRP001808)
85
161
+
Val
TAC
[SRA]
>SRA1032793
SRR035088.103985
454 Sequencing (SRP001809)
426
350
-
Val
TAC
[SRA]
>SRA1033431
SRR035088.255967
454 Sequencing (SRP001809)
109
33
-
Val
TAC
[SRA]
>SRA1033521
SRR035088.277667
454 Sequencing (SRP001809)
329
405
+
Val
TAC
[SRA]
>SRA1033740
SRR035088.341269
454 Sequencing (SRP001809)
335
259
-
Val
TAC
[SRA]
>SRA1033921
SRR035088.408059
454 Sequencing (SRP001809)
28
104
+
Val
TAC
[SRA]
>SRA1034077
SRR035088.476728
454 Sequencing (SRP001809)
121
45
-
Val
TAC
[SRA]
>SRA1034084
SRR035088.481203
454 Sequencing (SRP001809)
80
4
-
Val
TAC
[SRA]
>SRA1034808
SRR035089.177869
454 Sequencing (SRP001810)
324
400
+
Val
TAC
[SRA]
>SRA1035348
SRR035089.287863
454 Sequencing (SRP001810)
428
504
+
Val
TAC
[SRA]
>SRA1036828
SRR035090.18897
454 Sequencing (SRP001811)
129
205
+
Val
TAC
[SRA]
>SRA1037342
SRR035090.119135
454 Sequencing (SRP001811)
133
209
+
Val
TAC
[SRA]
>SRA1037353
SRR035090.120883
454 Sequencing (SRP001811)
94
18
-
Val
TAC
[SRA]
>SRA1037547
SRR035090.151455
454 Sequencing (SRP001811)
156
80
-
Val
TAC
[SRA]
>SRA1037548
SRR035090.151576
454 Sequencing (SRP001811)
245
169
-
Val
TAC
[SRA]
>SRA1037633
SRR035090.165677
454 Sequencing (SRP001811)
152
76
-
Val
TAC
[SRA]
>SRA1037711
SRR035090.179320
454 Sequencing (SRP001811)
308
232
-
Val
TAC
[SRA]
>SRA1037784
SRR035090.194091
454 Sequencing (SRP001811)
104
180
+
Val
TAC
[SRA]
>SRA1037797
SRR035090.198038
454 Sequencing (SRP001811)
20
96
+
Val
TAC
[SRA]
>SRA1037923
SRR035090.218608
454 Sequencing (SRP001811)
260
336
+
Val
TAC
[SRA]
>SRA1038078
SRR035090.242595
454 Sequencing (SRP001811)
311
387
+
Val
TAC
[SRA]
>SRA1038111
SRR035090.247577
454 Sequencing (SRP001811)
401
325
-
Val
TAC
[SRA]
>SRA1038244
SRR035090.270990
454 Sequencing (SRP001811)
249
322
+
Val
TAC
[SRA]
>SRA1038267
SRR035090.277253
454 Sequencing (SRP001811)
3
79
+
Val
TAC
[SRA]
>SRA1038373
SRR035090.292965
454 Sequencing (SRP001811)
420
344
-
Val
TAC
[SRA]
>SRA1038701
SRR035090.352072
454 Sequencing (SRP001811)
267
191
-
Val
TAC
[SRA]
>SRA1038836
SRR035090.376324
454 Sequencing (SRP001811)
253
177
-
Val
TAC
[SRA]
>SRA1038853
SRR035090.380309
454 Sequencing (SRP001811)
82
6
-
Val
TAC
[SRA]
>SRA1038933
SRR035090.397227
454 Sequencing (SRP001811)
280
356
+
Val
TAC
[SRA]
>SRA1038950
SRR035090.398822
454 Sequencing (SRP001811)
420
344
-
Val
TAC
[SRA]
>SRA1039000
SRR035090.406306
454 Sequencing (SRP001811)
122
46
-
Val
TAC
[SRA]
>SRA1039014
SRR035090.407655
454 Sequencing (SRP001811)
154
78
-
Val
TAC
[SRA]
>SRA1039139
SRR035090.430913
454 Sequencing (SRP001811)
110
186
+
Val
TAC
[SRA]
>SRA1039153
SRR035090.433101
454 Sequencing (SRP001811)
133
209
+
Val
TAC
[SRA]
>SRA1039190
SRR035090.440024
454 Sequencing (SRP001811)
228
152
-
Val
TAC
[SRA]
>SRA1039220
SRR035090.446673
454 Sequencing (SRP001811)
335
259
-
Val
TAC
[SRA]
>SRA1039493
SRR035090.503007
454 Sequencing (SRP001811)
243
319
+
Val
TAC
[SRA]
>SRA1039730
SRR035090.555305
454 Sequencing (SRP001811)
290
366
+
Val
TAC
[SRA]
>SRA1039896
SRR035090.596377
454 Sequencing (SRP001811)
1
77
+
Val
TAC
[SRA]
>SRA1040080
SRR035091.34465
454 Sequencing (SRP001812)
229
305
+
Val
TAC
[SRA]
>SRA1040304
SRR035091.75201
454 Sequencing (SRP001812)
354
278
-
Val
TAC
[SRA]
>SRA1045788
SRR035093.169739
454 Sequencing (SRP001814)
264
188
-
Val
TAC
[SRA]
>SRA1045967
SRR035093.206923
454 Sequencing (SRP001814)
106
30
-
Val
TAC
[SRA]
>SRA1046083
SRR035093.232459
454 Sequencing (SRP001814)
266
190
-
Val
TAC
[SRA]
>SRA1046457
SRR035093.313057
454 Sequencing (SRP001814)
78
2
-
Val
TAC
[SRA]
>SRA1054080
SRR035099.52354
454 Sequencing (SRP001820)
336
260
-
Val
TAC
[SRA]
>SRA1054116
SRR035099.61985
454 Sequencing (SRP001820)
151
75
-
Val
TAC
[SRA]
>SRA1054141
SRR035099.68754
454 Sequencing (SRP001820)
384
460
+
Val
TAC
[SRA]
>SRA1054187
SRR035099.80065
454 Sequencing (SRP001820)
336
260
-
Val
TAC
[SRA]
>SRA1054294
SRR035099.100826
454 Sequencing (SRP001820)
358
282
-
Val
TAC
[SRA]
>SRA1054336
SRR035099.108393
454 Sequencing (SRP001820)
309
385
+
Val
TAC
[SRA]
>SRA1054418
SRR035099.129377
454 Sequencing (SRP001820)
456
380
-
Val
TAC
[SRA]
>SRA1054474
SRR035099.139987
454 Sequencing (SRP001820)
248
172
-
Val
TAC
[SRA]
>SRA1054479
SRR035099.141335
454 Sequencing (SRP001820)
279
203
-
Val
TAC
[SRA]
>SRA1054503
SRR035099.148171
454 Sequencing (SRP001820)
309
385
+
Val
TAC
[SRA]
>SRA1054565
SRR035099.164502
454 Sequencing (SRP001820)
346
270
-
Val
TAC
[SRA]
>SRA1054620
SRR035099.175014
454 Sequencing (SRP001820)
271
347
+
Val
TAC
[SRA]
>SRA1054796
SRR035099.216630
454 Sequencing (SRP001820)
289
213
-
Val
TAC
[SRA]
>SRA1054870
SRR035099.240728
454 Sequencing (SRP001820)
192
116
-
Val
TAC
[SRA]
>W1610947164
LUZT01000003
Chlorobiota
Chlorobiales bacterium Clorobi_01 [LUZT]
18606
18529
-
Val
TAC
[ENA]
¡û
>W1610977627
LVWG01000016
Chlorobiota
Pelodictyon luteolum [LVWG]
113694
113768
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK