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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146641 (87 seq.)
>W1710799880
LJVG01000014
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
8748
8824
+
Arg
ACG
[ENA]
¡û
>W1710799881
LJVG01000014
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
8889
8965
+
Arg
ACG
[ENA]
¡û
>W1710799882
LJVG01000014
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
9031
9107
+
Arg
ACG
[ENA]
¡û
>W1710803951
LJYX01000006
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
440849
440925
+
Arg
ACG
[ENA]
¡û
>W1710803952
LJYX01000006
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
440990
441066
+
Arg
ACG
[ENA]
¡û
>W1710803953
LJYX01000006
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
441131
441207
+
Arg
ACG
[ENA]
¡û
>W131177256
ARKQ01000043
Gammaproteobacteria
Colwellia piezophila ATCC BAA-637 [ARKQ]
57366
57290
-
Arg
ACG
[ENA]
¡û
>W131177259
ARKQ01000044
Gammaproteobacteria
Colwellia piezophila ATCC BAA-637 [ARKQ]
444
368
-
Arg
ACG
[ENA]
¡û
>W131177260
ARKQ01000044
Gammaproteobacteria
Colwellia piezophila ATCC BAA-637 [ARKQ]
300
224
-
Arg
ACG
[ENA]
¡û
>W131177261
ARKQ01000044
Gammaproteobacteria
Colwellia piezophila ATCC BAA-637 [ARKQ]
80
4
-
Arg
ACG
[ENA]
¡û
>C171034536
CP014944
Gammaproteobacteria
Colwellia sp. PAMC 20917 [CP014944]
3360526
3360602
+
Arg
ACG
-
¡û
>C171034537
CP014944
Gammaproteobacteria
Colwellia sp. PAMC 20917 [CP014944]
3360697
3360773
+
Arg
ACG
-
¡û
>C171034538
CP014944
Gammaproteobacteria
Colwellia sp. PAMC 20917 [CP014944]
3360953
3361029
+
Arg
ACG
-
¡û
>C006782
CP000083
Gammaproteobacteria
Colwellia psychrerythraea 34H 34H; BAA-681 [CP000083]
1072605
1072681
+
Arg
ACG
[Ensembl]
¡û
>C006783
CP000083
Gammaproteobacteria
Colwellia psychrerythraea 34H 34H; BAA-681 [CP000083]
1072747
1072823
+
Arg
ACG
[Ensembl]
¡û
>C006784
CP000083
Gammaproteobacteria
Colwellia psychrerythraea 34H 34H; BAA-681 [CP000083]
1072968
1073044
+
Arg
ACG
[Ensembl]
¡û
>WENV182546998
OJBR01000104
[OJBR] seawater metagenome; Sea water
47881
47957
+
Arg
ACG
[ENA]
¢þ
>WENV182568953
OJEX01007865
[OJEX] seawater metagenome; Sea water
632
708
+
Arg
ACG
[ENA]
¢þ
>WENV182588238
OJHP01003207
[OJHP] seawater metagenome; Sea water
199
123
-
Arg
ACG
[ENA]
¢þ
>WENV182588341
OJHR01005909
[OJHR] seawater metagenome; Sea water
333
409
+
Arg
ACG
[ENA]
¢þ
>WENV182591320
OJIL01018074
[OJIL] seawater metagenome; Sea water
209
133
-
Arg
ACG
[ENA]
¢þ
>WENV182592532
OJIR01002966
[OJIR] seawater metagenome; Sea water
198
274
+
Arg
ACG
[ENA]
¢þ
>WENV170537151
CEWQ01015007
[CEWQ] marine metagenome genome assembly TARA_085_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
170
246
+
Arg
ACG
[ENA]
¢þ
>WENV170538137
CEWR01056483
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
516
440
-
Arg
ACG
[ENA]
¢þ
>WENV170538138
CEWR01056483
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
375
299
-
Arg
ACG
[ENA]
¢þ
>WENV170647015
JQIA01008110
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
73
-1
-
Arg
ACG
[ENA]
¢þ
>WENV170780506
MAAB01003303
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
39
115
+
Arg
ACG
[ENA]
¢þ
>WENV170780507
MAAB01003303
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
434
510
+
Arg
ACG
[ENA]
¢þ
>WENV170780509
MAAB01003303
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
964
1040
+
Arg
ACG
[ENA]
¢þ
>WENV170780510
MAAB01003303
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
1203
1279
+
Arg
ACG
[ENA]
¢þ
>WENV170780511
MAAB01003303
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
1539
1615
+
Arg
ACG
[ENA]
¢þ
>WENV170781015
MAAB01029032
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
30071
30147
+
Arg
ACG
[ENA]
¢þ
>WENV170781016
MAAB01029032
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
30175
30251
+
Arg
ACG
[ENA]
¢þ
>WENV170781017
MAAB01029032
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
30398
30474
+
Arg
ACG
[ENA]
¢þ
>WENV170781196
MAAB01029656
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
31709
31633
-
Arg
ACG
[ENA]
¢þ
>WENV170781197
MAAB01029656
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
31565
31489
-
Arg
ACG
[ENA]
¢þ
>WENV170781215
MAAB01029705
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
14345
14269
-
Arg
ACG
[ENA]
¢þ
>WENV170781216
MAAB01029705
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
14177
14101
-
Arg
ACG
[ENA]
¢þ
>WENV170781611
MAAB01038732
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
1255
1331
+
Arg
ACG
[ENA]
¢þ
>WENV170782445
MAAC01009947
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
4934
4858
-
Arg
ACG
[ENA]
¢þ
>WENV170782446
MAAC01009947
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
4694
4618
-
Arg
ACG
[ENA]
¢þ
>WENV170782447
MAAC01009947
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
4460
4384
-
Arg
ACG
[ENA]
¢þ
>WENV170783213
MAAC01014878
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
11300
11376
+
Arg
ACG
[ENA]
¢þ
>WENV170783214
MAAC01014878
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
11444
11520
+
Arg
ACG
[ENA]
¢þ
>WENV170783231
MAAC01015201
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
7418
7342
-
Arg
ACG
[ENA]
¢þ
>WENV170783232
MAAC01015201
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
7197
7121
-
Arg
ACG
[ENA]
¢þ
>W1810155070
PJAI01000015
Gammaproteobacteria
Colwellia echini A3T [PJAI]
116271
116347
+
Arg
ACG
[ENA]
¡û
>W1810155071
PJAI01000015
Gammaproteobacteria
Colwellia echini A3T [PJAI]
116412
116488
+
Arg
ACG
[ENA]
¡û
>W1810155375
PJAQ01000066
Gammaproteobacteria
Colwellia sp. 12G3 [PJAQ]
481233
481309
+
Arg
ACG
[ENA]
¡û
>W1810155376
PJAQ01000066
Gammaproteobacteria
Colwellia sp. 12G3 [PJAQ]
481375
481451
+
Arg
ACG
[ENA]
¡û
>W1810155377
PJAQ01000066
Gammaproteobacteria
Colwellia sp. 12G3 [PJAQ]
481726
481802
+
Arg
ACG
[ENA]
¡û
>W1810155379
PJAQ01000066
Gammaproteobacteria
Colwellia sp. 12G3 [PJAQ]
482450
482526
+
Arg
ACG
[ENA]
¡û
>W1810155380
PJAQ01000066
Gammaproteobacteria
Colwellia sp. 12G3 [PJAQ]
482591
482667
+
Arg
ACG
[ENA]
¡û
>W1810155531
PJAU01000031
Gammaproteobacteria
Colwellia sp. 75C3 [PJAU]
198020
198096
+
Arg
ACG
[ENA]
¡û
>W1810155532
PJAU01000031
Gammaproteobacteria
Colwellia sp. 75C3 [PJAU]
198161
198237
+
Arg
ACG
[ENA]
¡û
>W1810155533
PJAU01000031
Gammaproteobacteria
Colwellia sp. 75C3 [PJAU]
198511
198587
+
Arg
ACG
[ENA]
¡û
>W1810155535
PJAU01000031
Gammaproteobacteria
Colwellia sp. 75C3 [PJAU]
198945
199021
+
Arg
ACG
[ENA]
¡û
>W1810155536
PJAU01000031
Gammaproteobacteria
Colwellia sp. 75C3 [PJAU]
199086
199162
+
Arg
ACG
[ENA]
¡û
>W1810155969
PJBA01000001
Gammaproteobacteria
Colwellia sp. Bg11-28 [PJBA]
267383
267307
-
Arg
ACG
[ENA]
¡û
>W1810155970
PJBA01000001
Gammaproteobacteria
Colwellia sp. Bg11-28 [PJBA]
267241
267165
-
Arg
ACG
[ENA]
¡û
>W1810155971
PJBA01000001
Gammaproteobacteria
Colwellia sp. Bg11-28 [PJBA]
267020
266944
-
Arg
ACG
[ENA]
¡û
>W1810735864
QOLD01000023
Gammaproteobacteria
Candidatus Colwellia aromaticivorans Bin11-node4 [QOLD]
2160
2084
-
Arg
ACG
[ENA]
¡û
>W1810735865
QOLD01000023
Gammaproteobacteria
Candidatus Colwellia aromaticivorans Bin11-node4 [QOLD]
1921
1845
-
Arg
ACG
[ENA]
¡û
>W1810735866
QOLD01000023
Gammaproteobacteria
Candidatus Colwellia aromaticivorans Bin11-node4 [QOLD]
1584
1508
-
Arg
ACG
[ENA]
¡û
>W1810735879
QOLD01000043
Gammaproteobacteria
Candidatus Colwellia aromaticivorans Bin11-node4 [QOLD]
14667
14591
-
Arg
ACG
[ENA]
¡û
>W1810735880
QOLD01000043
Gammaproteobacteria
Candidatus Colwellia aromaticivorans Bin11-node4 [QOLD]
14428
14352
-
Arg
ACG
[ENA]
¡û
>W1810735881
QOLD01000043
Gammaproteobacteria
Candidatus Colwellia aromaticivorans Bin11-node4 [QOLD]
14091
14015
-
Arg
ACG
[ENA]
¡û
>W1511322898
JQEC01000046
Gammaproteobacteria
Colwellia psychrerythraea GAB14E [JQEC]
1
77
+
Arg
ACG
[ENA]
¡û
>W1511322899
JQEC01000046
Gammaproteobacteria
Colwellia psychrerythraea GAB14E [JQEC]
240
316
+
Arg
ACG
[ENA]
¡û
>W1511322901
JQEC01000047
Gammaproteobacteria
Colwellia psychrerythraea GAB14E [JQEC]
99877
99953
+
Arg
ACG
[ENA]
¡û
>W1511322902
JQEC01000047
Gammaproteobacteria
Colwellia psychrerythraea GAB14E [JQEC]
100018
100094
+
Arg
ACG
[ENA]
¡û
>W1511322904
JQEC01000047
Gammaproteobacteria
Colwellia psychrerythraea GAB14E [JQEC]
100551
100627
+
Arg
ACG
[ENA]
¡û
>W1511322905
JQEC01000047
Gammaproteobacteria
Colwellia psychrerythraea GAB14E [JQEC]
100791
100867
+
Arg
ACG
[ENA]
¡û
>W1511322991
JQED01000055
Gammaproteobacteria
Colwellia psychrerythraea ND2E [JQED]
309644
309720
+
Arg
ACG
[ENA]
¡û
>W1511322992
JQED01000055
Gammaproteobacteria
Colwellia psychrerythraea ND2E [JQED]
309789
309865
+
Arg
ACG
[ENA]
¡û
>W1511322993
JQED01000055
Gammaproteobacteria
Colwellia psychrerythraea ND2E [JQED]
310009
310085
+
Arg
ACG
[ENA]
¡û
>C161052225
CP013145
Gammaproteobacteria
Colwellia sp. MT41 [CP013145]
954844
954920
+
Arg
ACG
[Ensembl]
¡û
>C161052226
CP013145
Gammaproteobacteria
Colwellia sp. MT41 [CP013145]
954985
955061
+
Arg
ACG
[Ensembl]
¡û
>C161052227
CP013145
Gammaproteobacteria
Colwellia sp. MT41 [CP013145]
955127
955203
+
Arg
ACG
[Ensembl]
¡û
>W1610663837
LJVG01000014
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
8748
8824
+
Arg
ACG
[ENA]
¡û
>W1610663838
LJVG01000014
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
8889
8965
+
Arg
ACG
[ENA]
¡û
>W1610663839
LJVG01000014
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
9031
9107
+
Arg
ACG
[ENA]
¡û
>W1610667808
LJYX01000006
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
440849
440925
+
Arg
ACG
[ENA]
¡û
>W1610667809
LJYX01000006
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
440990
441066
+
Arg
ACG
[ENA]
¡û
>W1610667810
LJYX01000006
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
441131
441207
+
Arg
ACG
[ENA]
¡û
>W1710087381
BDQM01000056
Gammaproteobacteria
Colwellia marinimaniae [BDQM]
218
142
-
Arg
ACG
[ENA]
¡û
>W1710087382
BDQM01000056
Gammaproteobacteria
Colwellia marinimaniae [BDQM]
77
1
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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