This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146687 (42 seq.)
>W1711055227
LRUK01000055
Alphaproteobacteria
Sphingobium sp. AM [LRUK]
20192
20116
-
Arg
TCT
[ENA]
¡û
>W1711827057
MXQE01000023
Alphaproteobacteria
Labrenzia sp. CP4 [MXQE]
508137
508061
-
Arg
TCT
[ENA]
¡û
>C171097470
CP019630
Alphaproteobacteria
Roseibium aggregatum RMAR6-6 [CP019630]
5918891
5918815
-
Arg
TCT
-
¡û
>C171108856
CP020538
Alphaproteobacteria
Sphingobium herbicidovorans MH [CP020538]
917533
917609
+
Arg
TCT
-
¡û
>w020424
AAUW01000004
Alphaproteobacteria
Roseibium aggregatum IAM 12614 [AAUW]
144565
144643
+
Arg
TCT
[ENA]
¡û
>W141078093
ATHO01000055
Alphaproteobacteria
Sphingobium quisquiliarum P25 [ATHO]
61324
61248
-
Arg
TCT
[ENA]
¡û
>W141078468
ATIB01000079
Alphaproteobacteria
Sphingobium baderi LL03 [ATIB]
69302
69378
+
Arg
TCT
[ENA]
¡û
>W141090252
AUWY01000071
Alphaproteobacteria
Sphingobium ummariense RL-3 [AUWY]
138103
138027
-
Arg
TCT
[ENA]
¡û
>WENV181167544
OEIU01041437
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1020
944
-
Arg
TCT
[ENA]
¢þ
>W141152626
AXBY01000005
Alphaproteobacteria
Labrenzia sp. C1B10 [AXBY]
679983
679907
-
Arg
TCT
[ENA]
¡û
>W141152951
AXCE01000034
Alphaproteobacteria
Labrenzia sp. C1B70 [AXCE]
679983
679907
-
Arg
TCT
[ENA]
¡û
>WENV183739328
PJUE01008282
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
959
883
-
Arg
TCT
[ENA]
¢þ
>WENV170728233
LULE01014331
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
952
1028
+
Arg
TCT
[ENA]
¢þ
>WENV170779763
LZQR01000329
[LZQR] oil field metagenome; sample BH-FW-24 from oil reservoir
6874
6798
-
Arg
TCT
[ENA]
¢þ
>WENV170809548
MDSW01134015
[MDSW] marine metagenome; seawater
2970
3046
+
Arg
TCT
[ENA]
¢þ
>WENV170842438
MDSZ01240341
[MDSZ] marine metagenome; seawater
6206
6130
-
Arg
TCT
[ENA]
¢þ
>WENV170962982
MRWF01032067
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
166440
166516
+
Arg
TCT
[ENA]
¢þ
>WENV170963983
MRWG01001728
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
2727
2803
+
Arg
TCT
[ENA]
¢þ
>W141484873
JFYY01000005
Alphaproteobacteria
Sphingomonas paucimobilis [JFYY]
186146
186070
-
Arg
TCT
[ENA]
¡û
>W141484969
JFZA02000001
Alphaproteobacteria
Sphingobium herbicidovorans NBRC 16415 [JFZA]
134091
134015
-
Arg
TCT
[ENA]
¡û
>C191185571
CP041016
Alphaproteobacteria
Sphingobium fuliginis ATCC 27551 [CP041016, CP041017]
280650
280574
-
Arg
TCT
-
¡û
>W141712215
JMQK01000005
Alphaproteobacteria
Pseudorhizobium marinum MGL06 [JMQK]
2973
3049
+
Arg
TCT
[ENA]
¡û
>W141726145
JNAC01000066
Alphaproteobacteria
Sphingobium sp. DC-2 [JNAC]
40986
41062
+
Arg
TCT
[ENA]
¡û
>W141776085
JOKI01000004
Alphaproteobacteria
Pseudorhizobium pelagicum R1-200B2 [JOKI]
97763
97839
+
Arg
TCT
[ENA]
¡û
>W141776128
JOKJ01000003
Alphaproteobacteria
Pseudorhizobium pelagicum R2-400B4 [JOKJ]
97763
97839
+
Arg
TCT
[ENA]
¡û
>W1910501535
FYAO01000027
Alphaproteobacteria
Pannonibacter sp. P2PFMT1 [FYAO]
876433
876509
+
Arg
TCT
[ENA]
¡û
>PHG14100008
AB775548
Myoviridae
Pseudomonas phage PPpW-3 NTUH-K2044-K1-1 (AB775548)
21139
21063
-
Arg
TCT
[ENA]
¡û
>W1910797082
MSPY01000003
Gammaproteobacteria
Oleiagrimonas sp. MCCC 1A03011 [MSPY]
89877
89801
-
Arg
CCT
[ENA]
¡û
>W1510757091
JACV01000042
Alphaproteobacteria
Sphingobium baderi LL03 [JACV]
1463
1387
-
Arg
TCT
[ENA]
¡û
>W1511592114
LBIC01000007
Alphaproteobacteria
Sphingobium chungbukense DJ77 [LBIC]
527803
527879
+
Arg
TCT
[ENA]
¡û
>C161003429
CP005188
Alphaproteobacteria
Sphingobium sp. MI1205 [CP005188, CP005189]
959719
959643
-
Arg
TCT
[Ensembl]
¡û
>C161037941
CP011927
Alphaproteobacteria
Labrenzia sp. CP4 [CP011927]
3372810
3372734
-
Arg
TCT
-
¡û
>C161050796
CP013068
Alphaproteobacteria
Pannonibacter phragmitetus 31801 [CP013068]
4329290
4329214
-
Arg
TCT
[Ensembl]
¡û
>C161054562
CP013264
Alphaproteobacteria
Sphingobium baderi DE-13 [CP013264]
1673367
1673291
-
Arg
TCT
[Ensembl]
¡û
>C161092713
CP015986
Alphaproteobacteria
Sphingobium sp. EP60837 [CP015986, CP015987]
809555
809631
+
Arg
TCT
[Ensembl]
¡û
>W1610076926
BCZD01000001
Alphaproteobacteria
Sphingobium herbicidovorans NBRC 16415 [BCZD]
305144
305220
+
Arg
TCT
[ENA]
¡û
>W1610091977
CXST01000001
Alphaproteobacteria
Roseibium aggregatum aggregata [CXST]
574535
574611
+
Arg
TCT
[ENA]
¡û
>W1610896273
LRUK01000055
Alphaproteobacteria
Sphingobium sp. AM [LRUK]
20192
20116
-
Arg
TCT
[ENA]
¡û
>W1710074615
BCZD01000001
Alphaproteobacteria
Sphingobium herbicidovorans NBRC 16415 [BCZD]
305144
305220
+
Arg
TCT
[ENA]
¡û
>W1710095334
CXST01000001
Alphaproteobacteria
Roseibium aggregatum aggregata [CXST]
574535
574611
+
Arg
TCT
[ENA]
¡û
>W1710505621
FMTU01000032
Alphaproteobacteria
Sphingobium faniae [FMTU]
2538
2462
-
Arg
TCT
[ENA]
¡û
>W1710660265
JXMT01000035
Alphaproteobacteria
Roseibium aggregatum aggregata [JXMT]
83639
83563
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK