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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146713 (61 seq.)
>W1710888791
LMZZ01000022
Gammaproteobacteria
[Haemophilus] ducreyi [LMZZ]
86670
86594
-
Val
GAC
[ENA]
¡û
>W1711766147
MUYD01000002
Gammaproteobacteria
[Haemophilus] ducreyi [MUYD]
86850
86774
-
Val
GAC
[ENA]
¡û
>C010490
AE017143
Gammaproteobacteria
[Haemophilus] ducreyi 35000HP [AE017143]
1025150
1025074
-
Val
GAC
[Ensembl]
¡û
>WENV180011419
FLSK01003029
[FLSK] metagenome; saliva
81119
81043
-
Val
GAC
[ENA]
¢þ
>WENV180726053
ODGS01018770
[ODGS] human metagenome; G_DNA_Attached/Keratinized gingiva
322
398
+
Val
GAC
[ENA]
¢þ
>WENV180745917
ODHM01000101
[ODHM] human metagenome; G_DNA_Buccal mucosa
12131
12055
-
Val
GAC
[ENA]
¢þ
>WENV180793980
ODIY01000030
[ODIY] human metagenome; G_DNA_Buccal mucosa
15858
15782
-
Val
GAC
[ENA]
¢þ
>WENV180842577
ODKM01064190
[ODKM] human metagenome; G_DNA_Buccal mucosa
126
50
-
Val
GAC
[ENA]
¢þ
>WENV180856991
ODLA01000221
[ODLA] human metagenome; G_DNA_Buccal mucosa
730
806
+
Val
GAC
[ENA]
¢þ
>WENV180912704
ODSM01000043
[ODSM] human metagenome; G_DNA_Buccal mucosa
14336
14260
-
Val
GAC
[ENA]
¢þ
>WENV181012417
ODWK01000240
[ODWK] human metagenome; G_DNA_Supragingival plaque
8120
8196
+
Val
GAC
[ENA]
¢þ
>WENV181025497
ODXB01001528
[ODXB] human metagenome; G_DNA_Buccal mucosa
169
245
+
Val
GAC
[ENA]
¢þ
>WENV181084683
OEAX01000019
[OEAX] human metagenome; G_DNA_Tongue dorsum
39053
38977
-
Val
GAC
[ENA]
¢þ
>WENV181156908
OEIG01000002
[OEIG] human metagenome; G_DNA_Hard palate
181908
181832
-
Val
GAC
[ENA]
¢þ
>C181055858
CP022037
Gammaproteobacteria
[Haemophilus] ducreyi FDAARGOS_297 [CP022037]
1238228
1238152
-
Val
GAC
-
¡û
>C181148248
CP027235
Gammaproteobacteria
Haemophilus sp. oral taxon 036 F0629 [CP027235]
157662
157586
-
Val
GAC
-
¡û
>C181176109
CP029206
Gammaproteobacteria
Actinobacillus porcitonsillarum 9953L55 [CP029206]
1490970
1490894
-
Val
GAC
-
¡û
>C181224896
LT906448
Gammaproteobacteria
Pasteurella dagmatis NCTC11617 [LT906448]
823567
823643
+
Val
GAC
-
¡û
>C191208995
LR134364
Gammaproteobacteria
[Haemophilus] ducreyi NCTC11483 [LR134364]
1296756
1296832
+
Val
GAC
-
¡û
>C191212248
LR134488
Gammaproteobacteria
Pasteurella multocida NCTC8282 [LR134488]
869827
869751
-
Val
GAC
-
¡û
>W1910577733
JTLX01000001
Gammaproteobacteria
Haemophilus haemolyticus HI2028 [JTLX]
486912
486836
-
Val
GAC
[ENA]
¡û
>W1810578203
QEPN01000002
Gammaproteobacteria
Haemophilus sputorum C2002001239 [QEPN]
236539
236615
+
Val
GAC
[ENA]
¡û
>W1810770845
QQGV01000001
Gammaproteobacteria
Haemophilus haemolyticus M26156 [QQGV]
457808
457732
-
Val
GAC
[ENA]
¡û
>W1810771765
QQHN01000001
Gammaproteobacteria
Haemophilus haemolyticus M11818 [QQHN]
367024
366948
-
Val
GAC
[ENA]
¡û
>W1810772220
QQHW01000001
Gammaproteobacteria
Haemophilus haemolyticus M28908 [QQHW]
129785
129861
+
Val
GAC
[ENA]
¡û
>W1810772327
QQHY01000001
Gammaproteobacteria
Haemophilus haemolyticus M26164 [QQHY]
450309
450233
-
Val
GAC
[ENA]
¡û
>W1810776068
QQKS01000005
Gammaproteobacteria
Haemophilus haemolyticus M26174 [QQKS]
36941
36865
-
Val
GAC
[ENA]
¡û
>W10107759
ACZR01000014
Gammaproteobacteria
Pasteurella dagmatis ATCC 43325 [ACZR]
57440
57516
+
Val
GAC
[ENA]
¡û
>W11110146
ACZR01000014
Gammaproteobacteria
Pasteurella dagmatis ATCC 43325 [ACZR]
57440
57516
+
Val
GAC
[ENA]
¡û
>W1511620485
LCTH01000031
Gammaproteobacteria
Haemophilus haemolyticus 27P25 [LCTH]
6856
6932
+
Val
GAC
[ENA]
¡û
>W1511620530
LCTI01000015
Gammaproteobacteria
Haemophilus haemolyticus 1P26 [LCTI]
3598
3522
-
Val
GAC
[ENA]
¡û
>W11167737
AFNK01000071
Gammaproteobacteria
Haemophilus sputorum CCUG 13788 [AFNK]
9032
9108
+
Val
GAC
[ENA]
¡û
>W11171488
AFQO01000015
Gammaproteobacteria
Haemophilus haemolyticus M19501 [AFQO]
132291
132215
-
Val
GAC
[ENA]
¡û
>C161032188
CP011218
Gammaproteobacteria
[Haemophilus] ducreyi NZS1 [CP011218]
999551
999475
-
Val
GAC
-
¡û
>C161032240
CP011219
Gammaproteobacteria
[Haemophilus] ducreyi NZS2 [CP011219]
1008493
1008417
-
Val
GAC
-
¡û
>C161032292
CP011220
Gammaproteobacteria
[Haemophilus] ducreyi NZS3 [CP011220]
1010777
1010701
-
Val
GAC
-
¡û
>C161032343
CP011221
Gammaproteobacteria
[Haemophilus] ducreyi NZS4 [CP011221]
1005192
1005116
-
Val
GAC
-
¡û
>C161032395
CP011222
Gammaproteobacteria
[Haemophilus] ducreyi 82-029362 [CP011222]
1007707
1007631
-
Val
GAC
-
¡û
>C161032441
CP011223
Gammaproteobacteria
[Haemophilus] ducreyi 6644 [CP011223]
1035361
1035285
-
Val
GAC
-
¡û
>C161032493
CP011224
Gammaproteobacteria
[Haemophilus] ducreyi HD183 [CP011224]
1009990
1009914
-
Val
GAC
-
¡û
>C161032542
CP011225
Gammaproteobacteria
[Haemophilus] ducreyi HMC46 [CP011225]
985753
985677
-
Val
GAC
-
¡û
>C161032566
CP011226
Gammaproteobacteria
[Haemophilus] ducreyi HMC56 [CP011226]
1083003
1083079
+
Val
GAC
-
¡û
>C161032643
CP011227
Gammaproteobacteria
[Haemophilus] ducreyi NZV1 [CP011227]
968241
968165
-
Val
GAC
-
¡û
>C161032691
CP011228
Gammaproteobacteria
[Haemophilus] ducreyi 33921 [CP011228]
934553
934477
-
Val
GAC
-
¡û
>C161032743
CP011229
Gammaproteobacteria
[Haemophilus] ducreyi CIP 54.2 [CP011229]
919715
919639
-
Val
GAC
-
¡û
>C161032795
CP011230
Gammaproteobacteria
[Haemophilus] ducreyi DMC64 [CP011230]
921876
921800
-
Val
GAC
-
¡û
>C161032846
CP011231
Gammaproteobacteria
[Haemophilus] ducreyi DMC111 [CP011231]
919821
919745
-
Val
GAC
-
¡û
>C161087812
CP015424
Gammaproteobacteria
[Haemophilus] ducreyi VAN1 [CP015424]
658828
658904
+
Val
GAC
-
¡û
>C161087875
CP015425
Gammaproteobacteria
[Haemophilus] ducreyi VAN2 [CP015425]
1538951
1538875
-
Val
GAC
-
¡û
>C161087920
CP015426
Gammaproteobacteria
[Haemophilus] ducreyi VAN3 [CP015426]
1163037
1163113
+
Val
GAC
-
¡û
>C161087986
CP015427
Gammaproteobacteria
[Haemophilus] ducreyi VAN4 [CP015427]
730521
730445
-
Val
GAC
-
¡û
>C161088048
CP015428
Gammaproteobacteria
[Haemophilus] ducreyi VAN5 [CP015428]
32069
31993
-
Val
GAC
-
¡û
>C161088056
CP015429
Gammaproteobacteria
[Haemophilus] ducreyi GHA1 [CP015429]
636577
636653
+
Val
GAC
-
¡û
>C161088144
CP015430
Gammaproteobacteria
[Haemophilus] ducreyi GHA2 [CP015430]
98576
98500
-
Val
GAC
-
¡û
>C161088160
CP015431
Gammaproteobacteria
[Haemophilus] ducreyi GHA3 [CP015431]
996033
996109
+
Val
GAC
-
¡û
>C161088228
CP015432
Gammaproteobacteria
[Haemophilus] ducreyi GHA5 [CP015432]
839044
838968
-
Val
GAC
-
¡û
>C161088264
CP015433
Gammaproteobacteria
[Haemophilus] ducreyi GHA8 [CP015433]
1219120
1219196
+
Val
GAC
-
¡û
>C161088316
CP015434
Gammaproteobacteria
[Haemophilus] ducreyi GHA9 [CP015434]
1617105
1617181
+
Val
GAC
-
¡û
>W121016946
AGRK01000020
Gammaproteobacteria
Haemophilus sp. oral taxon 851 oral taxon 851 str. F0397 [AGRK]
88528
88452
-
Val
GAC
[ENA]
¡û
>W1610749169
LMZZ01000022
Gammaproteobacteria
[Haemophilus] ducreyi [LMZZ]
86670
86594
-
Val
GAC
[ENA]
¡û
>W1710555119
FOJC01000006
Gammaproteobacteria
[Haemophilus] ducreyi [FOJC]
45802
45878
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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