This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146743 (94 seq.)
>W1710777574
LJBS01000004
Bacillota
Pediococcus acidilactici [LJBS]
68228
68301
+
Arg
CCT
[ENA]
¡û
>W1710915785
LNUM01000034
Bacillota
Pediococcus acidilactici [LNUM]
29377
29450
+
Arg
CCT
[ENA]
¡û
>W1711005274
LQNM01000001
Bacillota
Pediococcus pentosaceus [LQNM]
343750
343677
-
Arg
CCT
[ENA]
¡û
>W1711005586
LQNQ01000039
Bacillota
Pediococcus acidilactici [LQNQ]
10839
10766
-
Arg
CCT
[ENA]
¡û
>W1711005648
LQNR01000098
Bacillota
Pediococcus acidilactici [LQNR]
10838
10765
-
Arg
CCT
[ENA]
¡û
>W1711025288
LRBW01000050
Bacillota
Pediococcus acidilactici [LRBW]
10833
10760
-
Arg
CCT
[ENA]
¡û
>W1711068951
LSFE01000015
Bacillota
Pediococcus pentosaceus [LSFE]
18831
18758
-
Arg
CCT
[ENA]
¡û
>W1711092363
LTEA01000208
Bacillota
Pediococcus damnosus [LTEA]
4150
4225
+
Arg
CCT
[ENA]
¡û
>W1711258414
LYUJ01000018
Bacillota
Pediococcus acidilactici [LYUJ]
11091
11018
-
Arg
CCT
[ENA]
¡û
>W1711352494
MDDF01000224
Bacillota
Pediococcus acidilactici [MDDF]
1367
1294
-
Arg
CCT
[ENA]
¡û
>W1711585772
MOAB01000001
Bacillota
Pediococcus acidilactici [MOAB]
955785
955712
-
Arg
CCT
[ENA]
¡û
>C171036775
CP015206
Bacillota
Pediococcus acidilactici ZPA017 [CP015206]
2073844
2073917
+
Arg
CCT
-
¡û
>C171083257
CP018763
Bacillota
Pediococcus acidilactici BCC1 [CP018763]
603490
603563
+
Arg
CCT
-
¡û
>C171119467
CP021474
Bacillota
Pediococcus pentosaceus SRCM100892 [CP021474]
1181542
1181615
+
Arg
CCT
-
¡û
>C171119563
CP021484
Bacillota
Pediococcus acidilactici SRCM100424 [CP021484]
607980
608053
+
Arg
CCT
-
¡û
>C171119620
CP021487
Bacillota
Pediococcus acidilactici SRCM100313 [CP021487]
607950
608023
+
Arg
CCT
-
¡û
>C171120423
CP021529
Bacillota
Pediococcus acidilactici SRCM101189 [CP021529]
607982
608055
+
Arg
CCT
-
¡û
>C171126485
CP021927
Bacillota
Pediococcus pentosaceus SRCM100194 [CP021927]
1144091
1144164
+
Arg
CCT
-
¡û
>W131146235
AQGT01000003
Bacillota
Pediococcus acidilactici D3 [AQGT]
17904
17831
-
Arg
CCT
[ENA]
¡û
>W131239186
BANK01000021
Bacillota
Pediococcus acidilactici NGRI 0510Q [BANK]
18198
18271
+
Arg
CCT
[ENA]
¡û
>C017455
CP000422
Bacillota
Pediococcus pentosaceus ATCC 25745 [CP000422]
649357
649284
-
Arg
CCT
[Ensembl]
¡û
>WENV180279566
OBHX01050345
[OBHX] metagenome; feces
916
843
-
Arg
CCT
[ENA]
¢þ
>WENV180334039
OBLF01004187
[OBLF] metagenome; feces
1890
1963
+
Arg
CCT
[ENA]
¢þ
>WENV180349399
OBLO01041322
[OBLO] metagenome; feces
1116
1043
-
Arg
CCT
[ENA]
¢þ
>W141236507
BBIM01000021
Bacillota
Pediococcus inopinatus [BBIM]
10486
10409
-
Arg
CCT
[ENA]
¡û
>W141241991
CAHU01000010
Bacillota
Pediococcus pentosaceus IE-3 [CAHU]
22361
22434
+
Arg
CCT
[ENA]
¡û
>W141280143
JAGU01000001
Bacillota
Pediococcus acidilactici AGR20 [JAGU]
435632
435559
-
Arg
CCT
[ENA]
¡û
>WENV183238234
OLQY01012884
[OLQY] human gut metagenome; faeces
1646
1719
+
Arg
CCT
[ENA]
¢þ
>WENV183491517
OMGG01022165
[OMGG] human gut metagenome; human gut
44
117
+
Arg
CCT
[ENA]
¢þ
>WENV183762367
PPYE01275572
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
10626
10553
-
Arg
CCT
[ENA]
¢þ
>WENV183769043
PPYE01412700
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1208
1135
-
Arg
CCT
[ENA]
¢þ
>WENV183789013
PPYF01372935
[PPYF] human gut metagenome; stool from patient with Crohn's disease
924
851
-
Arg
CCT
[ENA]
¢þ
>WENV183790355
PPYF01411241
[PPYF] human gut metagenome; stool from patient with Crohn's disease
46203
46130
-
Arg
CCT
[ENA]
¢þ
>WENV183792345
PPYF01458709
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1363
1290
-
Arg
CCT
[ENA]
¢þ
>W141402956
JDVW01000006
Bacillota
Pediococcus pentosaceus CGMCC 7049 [JDVW]
46907
46834
-
Arg
CCT
[ENA]
¡û
>WENV170659147
JXWR01000588
[JXWR] soil metagenome; rice field; ambient CO2
39157
39084
-
Arg
CCT
[ENA]
¢þ
>C181042106
CP019981
Bacillota
Pediococcus inopinatus DSM 20285 [CP019981]
571606
571530
-
Arg
CCT
-
¡û
>C181042787
CP020018
Bacillota
Pediococcus pentosaceus KCCM 40703 [CP020018]
1664306
1664233
-
Arg
CCT
-
¡û
>C191023266
CP023008
Bacillota
Pediococcus pentosaceus SS1-3 [CP023008]
610856
610783
-
Arg
CCT
-
¡û
>C191035321
CP025471
Bacillota
Pediococcus acidilactici PB22 [CP025471]
605728
605801
+
Arg
CCT
-
¡û
>C191106204
CP033438
Bacillota
Pediococcus acidilactici ATCC 8042 [CP033438]
1477031
1476958
-
Arg
CCT
-
¡û
>C191135560
CP035151
Bacillota
Pediococcus acidilactici SRCM103367 [CP035151]
600211
600284
+
Arg
CCT
-
¡û
>C191135617
CP035154
Bacillota
Pediococcus acidilactici SRCM103387 [CP035154]
664878
664951
+
Arg
CCT
-
¡û
>C191137807
CP035266
Bacillota
Pediococcus acidilactici SRCM103444 [CP035266]
1340372
1340299
-
Arg
CCT
-
¡û
>W1910181211
BJLT01000062
Bacillota
Pediococcus damnosus NBRC 3889 [BJLT]
11019
10944
-
Arg
CCT
[ENA]
¡û
>W1910181675
BJMF01000010
Bacillota
Pediococcus acidilactici NBRC 12231 [BJMF]
57477
57550
+
Arg
CCT
[ENA]
¡û
>W1910373919
FUHV01000002
Bacillota
Pediococcus acidilactici S7 [FUHV]
10889
10816
-
Arg
CCT
[ENA]
¡û
>C141009524
CP006854
Bacillota
Pediococcus pentosaceus SL4 [CP006854]
660190
660117
-
Arg
CCT
[Ensembl]
¡û
>W1910792184
MRAF01000001
Bacillota
Pediococcus damnosus P58 [MRAF]
1876101
1876026
-
Arg
CCT
[ENA]
¡û
>W1910841646
NAEQ01000002
Bacillota
Pediococcus damnosus VTT E-123216 [NAEQ]
251653
251728
+
Arg
CCT
[ENA]
¡û
>W1910841736
NAER01000002
Bacillota
Pediococcus damnosus VTT E-123212 [NAER]
1816066
1815991
-
Arg
CCT
[ENA]
¡û
>W1911631282
PUFB01000008
Bacillota
Pediococcus pentosaceus ATCC 33316 [PUFB]
37675
37602
-
Arg
CCT
[ENA]
¡û
>W1911696851
QNGC01000005
Bacillota
Pediococcus acidilactici GS1 [QNGC]
1595
1522
-
Arg
CCT
[ENA]
¡û
>W1911798459
QYRQ01000012
Bacillota
Pediococcus acidilactici WT [QYRQ]
1651
1578
-
Arg
CCT
[ENA]
¡û
>W1810000846
BEWQ01000010
Bacillota
Pediococcus pentosaceus NBRC 3182 [BEWQ]
57138
57065
-
Arg
CCT
[ENA]
¡û
>W1810049841
PCYQ01000004
Bacillota
Pediococcus acidilactici UMNPBX20 [PCYQ]
253133
253206
+
Arg
CCT
[ENA]
¡û
>W10105136
ACXB01000011
Bacillota
Pediococcus acidilactici 7_4 [ACXB]
10781
10708
-
Arg
CCT
[ENA]
¡û
>W10127375
AEEG01000008
Bacillota
Pediococcus acidilactici DSM 20284 [AEEG]
10839
10766
-
Arg
CCT
[ENA]
¡û
>W11107456
ACXB01000011
Bacillota
Pediococcus acidilactici 7_4 [ACXB]
10781
10708
-
Arg
CCT
[ENA]
¡û
>W1510765733
JANK01000152
Bacillota
Pediococcus damnosus LMG 28219 [JANK]
4163
4238
+
Arg
CCT
[ENA]
¡û
>W11134863
AEEG01000008
Bacillota
Pediococcus acidilactici DSM 20284 [AEEG]
10839
10766
-
Arg
CCT
[ENA]
¡û
>C161040682
CP012269
Bacillota
Pediococcus damnosus TMW 2.1532 [CP012269]
1580037
1579962
-
Arg
CCT
-
¡û
>C161040724
CP012275
Bacillota
Pediococcus damnosus TMW 2.1533 [CP012275]
665672
665747
+
Arg
CCT
-
¡û
>C161040801
CP012283
Bacillota
Pediococcus damnosus TMW 2.1534 [CP012283]
1680890
1680815
-
Arg
CCT
-
¡û
>C161040859
CP012288
Bacillota
Pediococcus damnosus TMW 2.1535 [CP012288]
1819681
1819606
-
Arg
CCT
[Ensembl]
¡û
>C161040888
CP012294
Bacillota
Pediococcus damnosus TMW 2.1536 [CP012294]
223456
223531
+
Arg
CCT
-
¡û
>C161092334
CP015918
Bacillota
Pediococcus pentosaceus wikim20 [CP015918]
1350103
1350176
+
Arg
CCT
[Ensembl]
¡û
>W121011464
AGKB01000006
Bacillota
Pediococcus acidilactici MA18/5M [AGKB]
65775
65848
+
Arg
CCT
[ENA]
¡û
>W1610057764
BBZC01000012
Bacillota
Pediococcus pentosaceus [BBZC]
41599
41526
-
Arg
CCT
[ENA]
¡û
>W1610527751
JQAQ01000006
Bacillota
Pediococcus acidilactici [JQAQ]
10775
10702
-
Arg
CCT
[ENA]
¡û
>W1610528311
JQBC01000025
Bacillota
Pediococcus inopinatus [JQBC]
23774
23851
+
Arg
CCT
[ENA]
¡û
>W1610528332
JQBD01000045
Bacillota
Pediococcus damnosus [JQBD]
4158
4233
+
Arg
CCT
[ENA]
¡û
>W1610528423
JQBF01000008
Bacillota
Pediococcus pentosaceus [JQBF]
36717
36644
-
Arg
CCT
[ENA]
¡û
>W1610529227
JQBX01000019
Bacillota
Pediococcus stilesii [JQBX]
5087
5011
-
Arg
CCT
[ENA]
¡û
>W1610529490
JQCC01000012
Bacillota
Pediococcus acidilactici [JQCC]
18162
18235
+
Arg
CCT
[ENA]
¡û
>W1610530163
JQCQ01000027
Bacillota
Pediococcus argentinicus [JQCQ]
21880
21953
+
Arg
CCT
[ENA]
¡û
>W1610641760
LJBS01000004
Bacillota
Pediococcus acidilactici [LJBS]
68228
68301
+
Arg
CCT
[ENA]
¡û
>W1610650065
LJIU01000002
Bacillota
Pediococcus pentosaceus wikim20 [LJIU]
372965
372892
-
Arg
CCT
[ENA]
¡û
>W1610774024
LNUM01000034
Bacillota
Pediococcus acidilactici [LNUM]
29377
29450
+
Arg
CCT
[ENA]
¡û
>W1610855924
LQNM01000001
Bacillota
Pediococcus pentosaceus [LQNM]
343750
343677
-
Arg
CCT
[ENA]
¡û
>W1610856236
LQNQ01000039
Bacillota
Pediococcus acidilactici [LQNQ]
10839
10766
-
Arg
CCT
[ENA]
¡û
>W1610856298
LQNR01000098
Bacillota
Pediococcus acidilactici [LQNR]
10838
10765
-
Arg
CCT
[ENA]
¡û
>W1610873400
LRBW01000050
Bacillota
Pediococcus acidilactici [LRBW]
10833
10760
-
Arg
CCT
[ENA]
¡û
>W1610909521
LSFE01000015
Bacillota
Pediococcus pentosaceus [LSFE]
18831
18758
-
Arg
CCT
[ENA]
¡û
>W1610926401
LTEA01000208
Bacillota
Pediococcus damnosus [LTEA]
4150
4225
+
Arg
CCT
[ENA]
¡û
>W1611020886
LYUJ01000018
Bacillota
Pediococcus acidilactici [LYUJ]
11091
11018
-
Arg
CCT
[ENA]
¡û
>W1710054463
BBZC01000012
Bacillota
Pediococcus pentosaceus [BBZC]
41599
41526
-
Arg
CCT
[ENA]
¡û
>W1710629382
JQAQ01000006
Bacillota
Pediococcus acidilactici [JQAQ]
10775
10702
-
Arg
CCT
[ENA]
¡û
>W1710629901
JQBC01000025
Bacillota
Pediococcus inopinatus [JQBC]
23774
23851
+
Arg
CCT
[ENA]
¡û
>W1710629922
JQBD01000045
Bacillota
Pediococcus damnosus [JQBD]
4158
4233
+
Arg
CCT
[ENA]
¡û
>W1710630013
JQBF01000008
Bacillota
Pediococcus pentosaceus [JQBF]
36717
36644
-
Arg
CCT
[ENA]
¡û
>W1710630817
JQBX01000019
Bacillota
Pediococcus stilesii [JQBX]
5087
5011
-
Arg
CCT
[ENA]
¡û
>W1710631080
JQCC01000012
Bacillota
Pediococcus acidilactici [JQCC]
18162
18235
+
Arg
CCT
[ENA]
¡û
>W1710631753
JQCQ01000027
Bacillota
Pediococcus argentinicus [JQCQ]
21880
21953
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK