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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146778 (53 seq.)
>W1711170218
LWAF01000019
Thermotogota
Fervidobacterium thailandense thailandensis [LWAF]
21167
21091
-
Arg
TCG
[ENA]
¡û
>C025675
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
206225
206149
-
Arg
TCG
-
¡û
>C025778
CP000702
Thermotogota
Thermotoga petrophila RKU-1 [CP000702]
737303
737379
+
Arg
TCG
[Ensembl]
¡û
>w019744
AAUK01000011
Thermotogota
Fervidobacterium nodosum Rt17-B1 [AAUK]
17268
17346
+
Arg
TCG
[ENA]
¡û
>WENV180013910
FPIC01009256
[FPIC] soil metagenome; Soil
34431
34355
-
Arg
TCG
[ENA]
¢þ
>WENV180014413
FQKF010008172
[FQKF] soil metagenome; Soil
3106
3030
-
Arg
TCG
[ENA]
¢þ
>WENV180037913
FVAA012013554
[FVAA] soil metagenome; Soil
130
54
-
Arg
TCG
[ENA]
¢þ
>WENV180097240
MTBK01175789
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
5051
4975
-
Arg
TCG
[ENA]
¢þ
>W141082670
AUNF01000052
Thermotogota
Thermotoga sp. A7A [AUNF]
16828
16752
-
Arg
TCG
[ENA]
¡û
>WENV181226258
OFDK01000388
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
6788
6864
+
Arg
TCG
[ENA]
¢þ
>WENV181285319
OFGS01000002
[OFGS] hot springs metagenome; Water and soil
133875
133951
+
Arg
TCG
[ENA]
¢þ
>WENV181407967
OGCH01000294
[OGCH] hot springs metagenome; hot springs
10458
10382
-
Arg
TCG
[ENA]
¢þ
>C08005004
CP000771
Thermotogota
Fervidobacterium nodosum Rt17-B1 [CP000771]
1133063
1132990
-
Arg
TCG
[Ensembl]
¡û
>C08010889
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
772989
773065
+
Arg
TCG
[Ensembl]
¡û
>WENV170676177
LDZR01001299
[LDZR] terrestrial metagenome; oil reservoir sample K2
4821
4897
+
Arg
TCG
[ENA]
¢þ
>WENV170676772
LDZS01002199
[LDZS] terrestrial metagenome; oil reservoir sample K3
2941
3017
+
Arg
TCG
[ENA]
¢þ
>W09106563
AAWB01000011
Thermotogota
Thermotoga petrophila RKU-1 [AAWB]
55923
55847
-
Arg
TCG
[ENA]
¡û
>W09107409
ABIJ01000003
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
35041
35117
+
Arg
TCG
[ENA]
¡û
>W09112240
ABXR01000030
Thermotogota
Marinitoga piezophila KA3 [ABXR]
35465
35541
+
Arg
TCG
[ENA]
¡û
>C141011520
CP007013
Thermotogota
Thermotoga maritima MSB8 [CP007013]
739394
739470
+
Arg
TCG
-
¡û
>W1910573553
JPMG01000012
Thermotogota
Fervidobacterium sp. SC_NGM5_O18 [JPMG]
14778
14702
-
Arg
TCG
[ENA]
¡û
>W1910573590
JPMH01000052
Thermotogota
Fervidobacterium sp. SC_NGM5_G05 [JPMH]
9810
9886
+
Arg
TCG
[ENA]
¡û
>W1910635435
LNDD01000001
Thermotogota
Thermotoga sp. SG1 [LNDD]
253023
253099
+
Arg
TCG
[ENA]
¡û
>C151004265
CP003408
Thermotogota
Thermotoga sp. 2812B [CP003408]
777756
777832
+
Arg
TCG
[Ensembl]
¡û
>C151004311
CP003409
Thermotogota
Thermotoga sp. Cell2 [CP003409]
722413
722489
+
Arg
TCG
[Ensembl]
¡û
>C151074635
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
206228
206152
-
Arg
TCG
[Ensembl]
¡û
>C151076989
CP011107
Thermotogota
Thermotoga maritima MSB8 [CP011107]
206228
206152
-
Arg
TCG
[Ensembl]
¡û
>C151077035
CP011108
Thermotogota
Thermotoga maritima Tma100 [CP011108]
206228
206152
-
Arg
TCG
[Ensembl]
¡û
>W10105822
ACXW01000001
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
203342
203266
-
Arg
TCG
[ENA]
¡û
>C10113515
CP001839
Thermotogota
Thermotoga petrophila RKU-10 [CP001839]
857519
857443
-
Arg
TCG
[Ensembl]
¡û
>W11108142
ACXW01000001
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
203342
203266
-
Arg
TCG
[ENA]
¡û
>W1511355437
JRRD02000001
Thermotogota
Fervidobacterium islandicum AW-1 [JRRD]
1579020
1579096
+
Arg
TCG
[ENA]
¡û
>W11180822
AGIJ01000003
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
203045
202969
-
Arg
TCG
[ENA]
¡û
>C121009894
CP003260
Thermotogota
Fervidobacterium pennivorans DSM 9078 [CP003260]
1301661
1301737
+
Arg
TCG
[Ensembl]
¡û
>C161034985
CP011393
Thermotogota
Fervidobacterium pennivorans DYC [CP011393]
1928155
1928231
+
Arg
TCG
[Ensembl]
¡û
>C161071281
CP014334
Thermotogota
Fervidobacterium islandicum AW-1 [CP014334]
1331152
1331228
+
Arg
TCG
[Ensembl]
¡û
>W121010835
AGJO01000002
Thermotogota
Fervidobacterium pennivorans DSM 9078 [AGJO]
304424
304348
-
Arg
TCG
[ENA]
¡û
>W121062179
AJII01000007
Thermotogota
Thermotoga sp. EMP [AJII]
205558
205634
+
Arg
TCG
[ENA]
¡û
>C131012525
CP004077
Thermotogota
Thermotoga maritima MSB8 [CP004077]
206228
206152
-
Arg
TCG
-
¡û
>W1610540355
JSFG01000015
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
166742
166818
+
Arg
TCG
[ENA]
¡û
>W1610540368
JSFH01000004
Thermotogota
Thermotoga sp. Mc24 [JSFH]
93680
93756
+
Arg
TCG
[ENA]
¡û
>W1610540447
JSFI01000014
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
155015
155091
+
Arg
TCG
[ENA]
¡û
>W1610540470
JSFJ01000009
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
88891
88815
-
Arg
TCG
[ENA]
¡û
>W1610612923
LGFG01000051
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
4821
4897
+
Arg
TCG
[ENA]
¡û
>W1610613162
LGFM01000068
Thermotogota
Thermotoga sp. 47_83 [LGFM]
2941
3017
+
Arg
TCG
[ENA]
¡û
>W1710517603
FNDL01000016
Thermotogota
Fervidobacterium changbaicum [FNDL]
8469
8393
-
Arg
TCG
[ENA]
¡û
>W1710593351
FRDJ01000004
Thermotogota
Fervidobacterium gondwanense DSM 13020 [FRDJ]
163760
163836
+
Arg
TCG
[ENA]
¡û
>W1710643376
JSFG01000015
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
166742
166818
+
Arg
TCG
[ENA]
¡û
>W1710643389
JSFH01000004
Thermotogota
Thermotoga sp. Mc24 [JSFH]
93680
93756
+
Arg
TCG
[ENA]
¡û
>W1710643468
JSFI01000014
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
155015
155091
+
Arg
TCG
[ENA]
¡û
>W1710643491
JSFJ01000009
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
88891
88815
-
Arg
TCG
[ENA]
¡û
>W1710734205
LGFG01000051
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
4821
4897
+
Arg
TCG
[ENA]
¡û
>W1710734369
LGFM01000068
Thermotogota
Thermotoga sp. 47_83 [LGFM]
2941
3017
+
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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