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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146789 (26 seq.)
>W1711129677
LUUF01000115
Gammaproteobacteria
Methylomonas methanica [LUUF]
69332
69408
+
Arg
TCT
[ENA]
¡û
>W1711129695
LUUG01000065
Gammaproteobacteria
Methylomonas methanica [LUUG]
70083
70159
+
Arg
TCT
[ENA]
¡û
>W1711129723
LUUH01000024
Gammaproteobacteria
Methylomonas methanica [LUUH]
35506
35582
+
Arg
TCT
[ENA]
¡û
>W1711129790
LUUI01000143
Gammaproteobacteria
Methylomonas lenta [LUUI]
37117
37193
+
Arg
TCT
[ENA]
¡û
>W131099684
AOTL01000021
Gammaproteobacteria
Methylotuvimicrobium buryatense 5G [AOTL]
236636
236712
+
Arg
TCT
[ENA]
¡û
>W131155773
AQOV01000002
Gammaproteobacteria
Methylomonas sp. MK1 [AQOV]
269807
269883
+
Arg
TCT
[ENA]
¡û
>W141187120
AYLO01000167
Gammaproteobacteria
Methyloglobulus morosus KoM1 [AYLO]
3490
3566
+
Arg
TCT
[ENA]
¡û
>W141219936
AZXK01000002
Gammaproteobacteria
Methylomonas sp. 11b [AZXK]
1431715
1431639
-
Arg
TCT
[ENA]
¡û
>WENV170577487
FSSH01000063
[FSSH] freshwater metagenome; drinking water
149406
149482
+
Arg
TCT
[ENA]
¢þ
>WENV170663418
JYMV01005380
[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
2641
2717
+
Arg
TCT
[ENA]
¢þ
>WENV170665927
JYMV01031553
[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
2372
2448
+
Arg
TCT
[ENA]
¢þ
>WENV170667568
JYMV01048991
[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
30992
30916
-
Arg
TCT
[ENA]
¢þ
>C191027178
CP024202
Gammaproteobacteria
Methylomicrobium sp. wino1 [CP024202]
1697976
1698052
+
Arg
TCT
-
¡û
>C191105406
CP033381
Gammaproteobacteria
Methylomonas sp. LW13 [CP033381]
625160
625236
+
Arg
TCT
-
¡û
>C191143441
CP035467
Gammaproteobacteria
Methylotuvimicrobium buryatense 5GB1C [CP035467]
4143014
4142938
-
Arg
TCT
-
¡û
>W141733692
JNLB01000002
Gammaproteobacteria
Methylomonas sp. LW13 [JNLB]
96822
96898
+
Arg
TCT
[ENA]
¡û
>W141807555
JPON01000001
Gammaproteobacteria
Methylomarinum vadi [JPON]
3352390
3352466
+
Arg
TCT
[ENA]
¡û
>W1810154923
PIZT01000007
Gammaproteobacteria
Methylomonas sp. Kb3 [PIZT]
70551
70627
+
Arg
TCT
[ENA]
¡û
>C151098004
FO082060
Gammaproteobacteria
Methylotuvimicrobium alcaliphilum 20Z [FO082060]
4017849
4017773
-
Arg
TCT
[Ensembl]
¡û
>C11114738
CP002738
Gammaproteobacteria
Methylomonas methanica MC09 [CP002738]
4513020
4512944
-
Arg
TCT
[Ensembl]
¡û
>W1511397878
JTDD01000064
Gammaproteobacteria
Methylomonas denitrificans FJG1 [JTDD]
27239
27163
-
Arg
TCT
[ENA]
¡û
>C161072461
CP014476
Gammaproteobacteria
Methylomonas denitrificans FJG1 [CP014476]
1391383
1391307
-
Arg
TCT
[Ensembl]
¡û
>W1610940750
LUUF01000115
Gammaproteobacteria
Methylomonas methanica [LUUF]
69332
69408
+
Arg
TCT
[ENA]
¡û
>W1610940768
LUUG01000065
Gammaproteobacteria
Methylomonas methanica [LUUG]
70083
70159
+
Arg
TCT
[ENA]
¡û
>W1610940796
LUUH01000024
Gammaproteobacteria
Methylomonas methanica [LUUH]
35506
35582
+
Arg
TCT
[ENA]
¡û
>W1610940863
LUUI01000143
Gammaproteobacteria
Methylomonas lenta [LUUI]
37117
37193
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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