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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146817 (37 seq.)
>W1710785364
LJHU01000041
Alphaproteobacteria
Brevundimonas sp. AAP58 [LJHU]
37647
37723
+
His
GTG
[ENA]
¡û
>W1710862016
LMEB01000010
Alphaproteobacteria
Brevundimonas sp. Root1279 [LMEB]
16164
16088
-
His
GTG
[ENA]
¡û
>W1711501736
MKRY01000209
Alphaproteobacteria
Brevundimonas sp. 67-6 [MKRY]
4115
4191
+
His
GTG
[ENA]
¡û
>W1711718129
MTHE01000023
Alphaproteobacteria
Brevundimonas sp. ZS04 [MTHE]
9895
9971
+
His
GTG
[ENA]
¡û
>W1712106189
NIVP01000018
Alphaproteobacteria
Brevundimonas diminuta [NIVP]
43866
43942
+
His
GTG
[ENA]
¡û
>W131218249
ATXN01000002
Alphaproteobacteria
Brevundimonas naejangsanensis DSM 23858 [ATXN]
752652
752576
-
His
GTG
[ENA]
¡û
>WENV180013874
FPIC01006191
[FPIC] soil metagenome; Soil
1266
1342
+
His
GTG
[ENA]
¢þ
>W141043024
AMFA01000127
Alphaproteobacteria
Brevundimonas diminuta 470-4 [AMFA]
14084
14008
-
His
GTG
[ENA]
¡û
>WENV181227958
OFDN01088294
[OFDN] hot springs metagenome; Water
537
461
-
His
GTG
[ENA]
¢þ
>WENV181308437
OFIS01021488
[OFIS] sludge metagenome; sludge
946
870
-
His
GTG
[ENA]
¢þ
>WENV181402271
OFTY01000400
[OFTY] sludge metagenome; sludge
14991
14915
-
His
GTG
[ENA]
¢þ
>WENV181732564
OGQD01054847
[OGQD] human gut metagenome; faeces
612
536
-
His
GTG
[ENA]
¢þ
>WENV183727716
PJTP01000098
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
62950
63026
+
His
GTG
[ENA]
¢þ
>WENV183728450
PJTQ01000057
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
14128
14052
-
His
GTG
[ENA]
¢þ
>WENV183731007
PJTS01003652
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
511
435
-
His
GTG
[ENA]
¢þ
>WENV183733477
PJTY01002635
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
3516
3440
-
His
GTG
[ENA]
¢þ
>WENV183735433
PJUB01000004
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
436101
436177
+
His
GTG
[ENA]
¢þ
>WENV183739046
PJUE01001179
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
7885
7809
-
His
GTG
[ENA]
¢þ
>WENV183740362
PJUF01001424
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
1883
1807
-
His
GTG
[ENA]
¢þ
>WENV170574394
FLYM01033534
[FLYM] hot springs metagenome; Sediment
2369
2445
+
His
GTG
[ENA]
¢þ
>WENV170646016
JQGF01007144
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
2122
2198
+
His
GTG
[ENA]
¢þ
>C191093994
CP032707
Alphaproteobacteria
Brevundimonas naejangsanensis BRV3 [CP032707]
2075358
2075434
+
His
GTG
-
¡û
>C191134425
CP035093
Alphaproteobacteria
Brevundimonas diminuta [CP035093]
1803476
1803552
+
His
GTG
-
¡û
>C191157369
CP038027
Alphaproteobacteria
Brevundimonas naejangsanensis FS1091 [CP038027]
481799
481875
+
His
GTG
-
¡û
>C191189132
CP041243
Alphaproteobacteria
Brevundimonas sp. M20 [CP041243]
2259798
2259722
-
His
GTG
-
¡û
>C191220444
LR588407
Alphaproteobacteria
Brevundimonas vancanneytii NCTC9239 [LR588407]
2074936
2074860
-
His
GTG
-
¡û
>W141551943
JHOF01000026
Alphaproteobacteria
Brevundimonas naejangsanensis [JHOF]
150521
150597
+
His
GTG
[ENA]
¡û
>W1910182702
BJNC01000031
Alphaproteobacteria
Brevundimonas diminuta NBRC 14213 [BJNC]
10086
10162
+
His
GTG
[ENA]
¡û
>W1910374346
FUIE01000077
Alphaproteobacteria
Brevundimonas diminuta 3F5N [FUIE]
472
396
-
His
GTG
[ENA]
¡û
>W1910725265
MGLK01000021
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_01_FULL_70_19 [MGLK]
14920
14844
-
His
GTG
[ENA]
¡û
>W1911760351
QWTZ01000006
Alphaproteobacteria
Brevundimonas sp. LPMIX5 [QWTZ]
13694
13618
-
His
GTG
[ENA]
¡û
>W11123420
ADUI01000076
Alphaproteobacteria
Brevundimonas diminuta ATCC 11568 [ADUI]
2963
3039
+
His
GTG
[ENA]
¡û
>W1511596058
LBNT01000008
Alphaproteobacteria
Brevundimonas diminuta XGC1 [LBNT]
47525
47601
+
His
GTG
[ENA]
¡û
>C161089832
CP015614
Alphaproteobacteria
Brevundimonas naejangsanensis B1 [CP015614]
1657582
1657506
-
His
GTG
[Ensembl]
¡û
>W1610649170
LJHU01000041
Alphaproteobacteria
Brevundimonas sp. AAP58 [LJHU]
37647
37723
+
His
GTG
[ENA]
¡û
>W1610724362
LMEB01000010
Alphaproteobacteria
Brevundimonas sp. Root1279 [LMEB]
16164
16088
-
His
GTG
[ENA]
¡û
>W1710576204
FOZV01000010
Alphaproteobacteria
Brevundimonas viscosa [FOZV]
16367
16291
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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