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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146819 (32 seq.)
>W1711501743
MKRY01000291
Alphaproteobacteria
Brevundimonas sp. 67-6 [MKRY]
4106
4030
-
Lys
TTT
[ENA]
¡û
>W1711718104
MTHE01000003
Alphaproteobacteria
Brevundimonas sp. ZS04 [MTHE]
66338
66262
-
Lys
TTT
[ENA]
¡û
>W1712106179
NIVP01000006
Alphaproteobacteria
Brevundimonas diminuta [NIVP]
149312
149388
+
Lys
TTT
[ENA]
¡û
>W131218252
ATXN01000002
Alphaproteobacteria
Brevundimonas naejangsanensis DSM 23858 [ATXN]
438611
438535
-
Lys
TTT
[ENA]
¡û
>W141043013
AMFA01000112
Alphaproteobacteria
Brevundimonas diminuta 470-4 [AMFA]
60474
60550
+
Lys
TTT
[ENA]
¡û
>WENV183727463
PJTP01000003
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
294809
294885
+
Lys
TTT
[ENA]
¢þ
>WENV183728570
PJTQ01000144
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
80313
80237
-
Lys
TTT
[ENA]
¢þ
>WENV183730903
PJTS01001896
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
676
600
-
Lys
TTT
[ENA]
¢þ
>WENV183733257
PJTY01000519
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
16470
16546
+
Lys
TTT
[ENA]
¢þ
>WENV183735492
PJUB01000015
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
301150
301226
+
Lys
TTT
[ENA]
¢þ
>WENV183738793
PJUE01000200
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
44593
44669
+
Lys
TTT
[ENA]
¢þ
>WENV183740418
PJUF01001816
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
8911
8987
+
Lys
TTT
[ENA]
¢þ
>WENV170645927
JQGF01000911
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
79
3
-
Lys
TTT
[ENA]
¢þ
>WENV170657438
JTFO01152425
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
298
222
-
Lys
TTT
[ENA]
¢þ
>WENV170784161
MCHG01000057
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
36320
36396
+
Lys
TTT
[ENA]
¢þ
>C191093999
CP032707
Alphaproteobacteria
Brevundimonas naejangsanensis BRV3 [CP032707]
2463447
2463523
+
Lys
TTT
-
¡û
>C191134430
CP035093
Alphaproteobacteria
Brevundimonas diminuta [CP035093]
2203025
2203101
+
Lys
TTT
-
¡û
>C191157373
CP038027
Alphaproteobacteria
Brevundimonas naejangsanensis FS1091 [CP038027]
830519
830595
+
Lys
TTT
-
¡û
>C191220449
LR588407
Alphaproteobacteria
Brevundimonas vancanneytii NCTC9239 [LR588407]
1723206
1723130
-
Lys
TTT
-
¡û
>W141551916
JHOF01000011
Alphaproteobacteria
Brevundimonas naejangsanensis [JHOF]
182997
183073
+
Lys
TTT
[ENA]
¡û
>W1910182682
BJNC01000006
Alphaproteobacteria
Brevundimonas diminuta NBRC 14213 [BJNC]
71168
71092
-
Lys
TTT
[ENA]
¡û
>W1910374321
FUIE01000020
Alphaproteobacteria
Brevundimonas diminuta 3F5N [FUIE]
130275
130199
-
Lys
TTT
[ENA]
¡û
>W1911566736
PCPB01000002
Alphaproteobacteria
Brevundimonas sp. MYb52 [PCPB]
39618
39694
+
Lys
TTT
[ENA]
¡û
>W1911566956
PCPF01000011
Alphaproteobacteria
Brevundimonas sp. MYb46 [PCPF]
80013
79937
-
Lys
TTT
[ENA]
¡û
>W1911567194
PCPK01000005
Alphaproteobacteria
Brevundimonas sp. MYb33 [PCPK]
39670
39746
+
Lys
TTT
[ENA]
¡û
>W1911567289
PCPM01000010
Alphaproteobacteria
Brevundimonas sp. MYb31 [PCPM]
80005
79929
-
Lys
TTT
[ENA]
¡û
>W1911567406
PCPO01000013
Alphaproteobacteria
Brevundimonas sp. MYb27 [PCPO]
14636
14712
+
Lys
TTT
[ENA]
¡û
>W1911760323
QWTZ01000002
Alphaproteobacteria
Brevundimonas sp. LPMIX5 [QWTZ]
86077
86153
+
Lys
TTT
[ENA]
¡û
>W1810693178
QLLC01000050
Alphaproteobacteria
Brevundimonas bullata HAMBI_262 [QLLC]
2265
2189
-
Lys
TTT
[ENA]
¡û
>W11123427
ADUI01000100
Alphaproteobacteria
Brevundimonas diminuta ATCC 11568 [ADUI]
10251
10327
+
Lys
TTT
[ENA]
¡û
>W1511596071
LBNT01000011
Alphaproteobacteria
Brevundimonas diminuta XGC1 [LBNT]
49883
49807
-
Lys
TTT
[ENA]
¡û
>C161089836
CP015614
Alphaproteobacteria
Brevundimonas naejangsanensis B1 [CP015614]
1309559
1309483
-
Lys
TTT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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