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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146839 (9 seq.)
>W1710955672
LOYB01000030
Betaproteobacteria
Burkholderia diffusa [LOYB]
30943
31019
+
Met
CAT
[ENA]
¡û
>W1710958068
LOZQ01000049
Betaproteobacteria
Burkholderia diffusa [LOZQ]
3969
3893
-
Met
CAT
[ENA]
¡û
>W1810659313
QJJY01000056
Betaproteobacteria
Burkholderia pyrrocinia NFIX32 [QJJY]
2898
2974
+
Met
CAT
[ENA]
¡û
>W1810683908
QKWJ01000001
Betaproteobacteria
Cupriavidus lacunae S23 [QKWJ]
1484
1408
-
Met
CAT
[ENA]
¡û
>W1610207384
FCOX02000244
Betaproteobacteria
Caballeronia calidae LMG 29321 [FCOX]
190
266
+
Met
CAT
[ENA]
¡û
>W1610811886
LOYB01000030
Betaproteobacteria
Burkholderia diffusa [LOYB]
30943
31019
+
Met
CAT
[ENA]
¡û
>W1610814282
LOZQ01000049
Betaproteobacteria
Burkholderia diffusa [LOZQ]
3969
3893
-
Met
CAT
[ENA]
¡û
>W1710580345
FPJF01000054
Betaproteobacteria
Burkholderia sp. NFACC33-1 [FPJF]
3226
3302
+
Met
CAT
[ENA]
¡û
>W1710580801
FPJP01000050
Betaproteobacteria
Burkholderia sp. NFPP32 [FPJP]
6849
6773
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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