This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146851 (77 seq.)
>W1710802916
LJYE01000037
Alphaproteobacteria
Bradyrhizobium pachyrhizi [LJYE]
35278
35354
+
Val
TAC
[ENA]
¡û
>W1710854925
LLXX01000033
Alphaproteobacteria
Bradyrhizobium valentinum [LLXX]
133091
133167
+
Val
TAC
[ENA]
¡û
>W1710854989
LLXY01000167
Alphaproteobacteria
Bradyrhizobium valentinum [LLXY]
25680
25756
+
Val
TAC
[ENA]
¡û
>W1710855076
LLXZ01000219
Alphaproteobacteria
Bradyrhizobium jicamae [LLXZ]
11511
11587
+
Val
TAC
[ENA]
¡û
>W1710855100
LLYA01000155
Alphaproteobacteria
Bradyrhizobium retamae [LLYA]
45680
45756
+
Val
TAC
[ENA]
¡û
>W1710855130
LLYB01000040
Alphaproteobacteria
Bradyrhizobium lablabi [LLYB]
11911
11987
+
Val
TAC
[ENA]
¡û
>W1711169182
LVYV01000003
Alphaproteobacteria
Tardiphaga robiniae [LVYV]
186187
186263
+
Val
TAC
[ENA]
¡û
>W1711193138
LWUI01000011
Alphaproteobacteria
Bradyrhizobium elkanii [LWUI]
258601
258525
-
Val
TAC
[ENA]
¡û
>W1711206741
LXEM01000022
Alphaproteobacteria
Bradyrhizobium elkanii [LXEM]
199050
199126
+
Val
TAC
[ENA]
¡û
>W1711317155
MAXB01000012
Alphaproteobacteria
Bradyrhizobium paxllaeri [MAXB]
99873
99949
+
Val
TAC
[ENA]
¡û
>W1711501144
MKRG01000058
Alphaproteobacteria
Afipia sp. 62-7 [MKRG]
19880
19804
-
Val
TAC
[ENA]
¡û
>W1711501354
MKRN01000046
Alphaproteobacteria
Nitrobacter sp. 62-13 [MKRN]
6599
6523
-
Val
TAC
[ENA]
¡û
>W1711502243
MKSM01000071
Alphaproteobacteria
Nitrobacter sp. 62-23 [MKSM]
15269
15193
-
Val
TAC
[ENA]
¡û
>W1711612979
MOXO01000025
Alphaproteobacteria
Bradyrhizobium elkanii [MOXO]
27273
27197
-
Val
TAC
[ENA]
¡û
>W1711636723
MPVQ01000020
Alphaproteobacteria
Bradyrhizobium brasilense UFLA 03-321 [MPVQ]
75442
75518
+
Val
TAC
[ENA]
¡û
>W1711795369
MWPQ01000039
Alphaproteobacteria
Nitrobacter vulgaris [MWPQ]
74062
74138
+
Val
TAC
[ENA]
¡û
>C171131963
LT859959
Alphaproteobacteria
Bradyrhizobium sp. ORS 285 [LT859959]
4042411
4042335
-
Val
TAC
-
¡û
>W131164109
ARAG01000009
Alphaproteobacteria
Bradyrhizobium elkanii USDA 76 [ARAG]
1330144
1330068
-
Val
TAC
[ENA]
¡û
>W131228563
AUGA01000033
Alphaproteobacteria
Bradyrhizobium sp. th.b2 [AUGA]
75084
75160
+
Val
TAC
[ENA]
¡û
>C004113
CU234118
Alphaproteobacteria
Bradyrhizobium sp. ORS 278 ORS278 [CU234118]
4394453
4394377
-
Val
TAC
[Ensembl]
¡û
>C014947
CP000319
Alphaproteobacteria
Nitrobacter hamburgensis X14 [CP000319]
2475681
2475605
-
Val
TAC
[Ensembl]
¡û
>C015365
CP000115
Alphaproteobacteria
Nitrobacter winogradskyi Nb-255 [CP000115]
2078266
2078342
+
Val
TAC
[Ensembl]
¡û
>w013003
AAMY01000019
Alphaproteobacteria
Nitrobacter sp. Nb-311A [AAMY]
65151
65227
+
Val
TAC
[ENA]
¡û
>W141007473
AGWY01000003
Alphaproteobacteria
Afipia clevelandensis ATCC 49720 [AGWY]
85552
85628
+
Val
TAC
[ENA]
¡û
>WENV180304038
OBJH01005971
[OBJH] soil metagenome; soil
419
495
+
Val
TAC
[ENA]
¢þ
>W141043068
AMFB01000036
Alphaproteobacteria
Bradyrhizobium sp. DFCI-1 [AMFB]
96508
96584
+
Val
TAC
[ENA]
¡û
>W141063664
APJD01000020
Alphaproteobacteria
Bradyrhizobium sp. OHSU_III [APJD]
149758
149834
+
Val
TAC
[ENA]
¡û
>WENV181166971
OEIU01005148
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
299
223
-
Val
TAC
[ENA]
¢þ
>WENV181167103
OEIU01008919
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
3484
3408
-
Val
TAC
[ENA]
¢þ
>WENV181167931
OEIU01107988
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
77
1
-
Val
TAC
[ENA]
¢þ
>WENV181375263
OFQY01065165
[OFQY] wastewater metagenome; Exp Tend VB 10WW
16
92
+
Val
TAC
[ENA]
¢þ
>WENV181379283
OFRD01000266
[OFRD] wastewater metagenome; Exp Tend CN 100WW
13718
13794
+
Val
TAC
[ENA]
¢þ
>WENV181385991
OFRL01000292
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
10778
10702
-
Val
TAC
[ENA]
¢þ
>WENV181399836
OFSF01000017
[OFSF] wastewater metagenome; Exp Tend VB 100WW
53883
53959
+
Val
TAC
[ENA]
¢þ
>W141150321
AXAH01000008
Alphaproteobacteria
Bradyrhizobium elkanii USDA 3254 [AXAH]
181478
181554
+
Val
TAC
[ENA]
¡û
>W141151074
AXAU01000001
Alphaproteobacteria
Bradyrhizobium murdochi WSM1741 [AXAU]
363603
363679
+
Val
TAC
[ENA]
¡û
>W141151189
AXAW01000007
Alphaproteobacteria
Bradyrhizobium elkanii USDA 3259 [AXAW]
181476
181552
+
Val
TAC
[ENA]
¡û
>W141261718
CCAZ010000095
Alphaproteobacteria
Afipia felis [CCAZ]
601
677
+
Val
TAC
[ENA]
¡û
>WENV183724169
PJQE01000716
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
1640
1716
+
Val
TAC
[ENA]
¢þ
>WENV170705920
LNAP01000619
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
46164
46240
+
Val
TAC
[ENA]
¢þ
>WENV170711670
LNFM01006432
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
18216
18140
-
Val
TAC
[ENA]
¢þ
>WENV170711810
LNFM01007550
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
15871
15795
-
Val
TAC
[ENA]
¢þ
>W09103023
AAIS01000006
Alphaproteobacteria
Nitrobacter hamburgensis X14 [AAIS]
150579
150655
+
Val
TAC
[ENA]
¡û
>WENV170974977
MTKY01083389
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
397
321
-
Val
TAC
[ENA]
¢þ
>C181113196
CP025113
Alphaproteobacteria
Bradyrhizobium sp. SK17 [CP025113]
5666820
5666744
-
Val
TAC
-
¡û
>W1910182844
BJNF01000050
Alphaproteobacteria
Nitrobacter winogradskyi NBRC 14297 [BJNF]
24287
24363
+
Val
TAC
[ENA]
¡û
>W1910183119
BJNL01000014
Alphaproteobacteria
Bradyrhizobium elkanii NBRC 14791 [BJNL]
87369
87293
-
Val
TAC
[ENA]
¡û
>W1910548949
FZOX01000002
Alphaproteobacteria
Tardiphaga sp. OK246 [FZOX]
1111033
1111109
+
Val
TAC
[ENA]
¡û
>W1910693449
MDEP01000040
Alphaproteobacteria
Bradyrhizobium sp. UASWS1016 [MDEP]
125746
125822
+
Val
TAC
[ENA]
¡û
>W1911409906
NWTG01000008
Alphaproteobacteria
Bradyrhizobium sp. C9 [NWTG]
204553
204629
+
Val
TAC
[ENA]
¡û
>W1810089272
PGEQ01000001
Alphaproteobacteria
Bradyrhizobium lablabi GAS165 [PGEQ]
2687015
2687091
+
Val
TAC
[ENA]
¡û
>W1810089660
PGEV01000001
Alphaproteobacteria
Afipia broomeae GAS525 [PGEV]
2191103
2191027
-
Val
TAC
[ENA]
¡û
>W1810400129
PYFV01000038
Alphaproteobacteria
Bradyrhizobium sp. MOS004 [PYFV]
4943
5019
+
Val
TAC
[ENA]
¡û
>W1810576970
QENW01000013
Alphaproteobacteria
Tardiphaga sp. OV697 [QENW]
124625
124701
+
Val
TAC
[ENA]
¡û
>W1810784353
QRAQ01000001
Alphaproteobacteria
Tardiphaga sp. CF115 [QRAQ]
43851
43927
+
Val
TAC
[ENA]
¡û
>W10119589
ADVZ01000005
Alphaproteobacteria
Afipia sp. 1NLS2 [ADVZ]
126017
125941
-
Val
TAC
[ENA]
¡û
>W11125855
ADVZ01000005
Alphaproteobacteria
Afipia sp. 1NLS2 [ADVZ]
126017
125941
-
Val
TAC
[ENA]
¡û
>W1511508015
JXOF01000187
Alphaproteobacteria
Bradyrhizobium elkanii UASWS1015 [JXOF]
187166
187090
-
Val
TAC
[ENA]
¡û
>W1511681472
LFIQ01000077
Alphaproteobacteria
Bradyrhizobium pachyrhizi PAC 48 [LFIQ]
85627
85551
-
Val
TAC
[ENA]
¡û
>W1511684045
LFLZ01000073
Alphaproteobacteria
Bradyrhizobium tropiciagri SEMIA 6148 [LFLZ]
32718
32794
+
Val
TAC
[ENA]
¡û
>C161097194
CP016428
Alphaproteobacteria
Bradyrhizobium icense LMTR 13 [CP016428]
3963072
3963148
+
Val
TAC
[Ensembl]
¡û
>W121065259
AJPW01000450
Alphaproteobacteria
Bradyrhizobium elkanii CCBAU 43297 [AJPW]
8781
8705
-
Val
TAC
[ENA]
¡û
>W121127073
CAFH01000060
Alphaproteobacteria
Bradyrhizobium sp. ORS 285 [CAFH]
63480
63404
-
Val
TAC
[ENA]
¡û
>W1610049411
BBEX01000933
Alphaproteobacteria
Bradyrhizobium sp. 17-4 [BBEX]
818
894
+
Val
TAC
[ENA]
¡û
>C131000811
AP012603
Alphaproteobacteria
Bradyrhizobium oligotrophicum S58 [AP012603]
3862405
3862481
+
Val
TAC
[Ensembl]
¡û
>W1610666773
LJYE01000037
Alphaproteobacteria
Bradyrhizobium pachyrhizi [LJYE]
35278
35354
+
Val
TAC
[ENA]
¡û
>W1610717266
LLXX01000033
Alphaproteobacteria
Bradyrhizobium valentinum [LLXX]
133091
133167
+
Val
TAC
[ENA]
¡û
>W1610717330
LLXY01000167
Alphaproteobacteria
Bradyrhizobium valentinum [LLXY]
25680
25756
+
Val
TAC
[ENA]
¡û
>W1610717417
LLXZ01000219
Alphaproteobacteria
Bradyrhizobium jicamae [LLXZ]
11511
11587
+
Val
TAC
[ENA]
¡û
>W1610717441
LLYA01000155
Alphaproteobacteria
Bradyrhizobium retamae [LLYA]
45680
45756
+
Val
TAC
[ENA]
¡û
>W1610717471
LLYB01000040
Alphaproteobacteria
Bradyrhizobium lablabi [LLYB]
11911
11987
+
Val
TAC
[ENA]
¡û
>W1610978977
LVYV01000003
Alphaproteobacteria
Tardiphaga robiniae [LVYV]
186187
186263
+
Val
TAC
[ENA]
¡û
>W1611061225
MAXB01000012
Alphaproteobacteria
Bradyrhizobium paxllaeri [MAXB]
99873
99949
+
Val
TAC
[ENA]
¡û
>W1710045810
BBEX01000933
Alphaproteobacteria
Bradyrhizobium sp. 17-4 [BBEX]
818
894
+
Val
TAC
[ENA]
¡û
>W1710540668
FNWZ01000003
Alphaproteobacteria
Tardiphaga sp. OK245 [FNWZ]
848902
848978
+
Val
TAC
[ENA]
¡û
>W1710568418
FOTP01000002
Alphaproteobacteria
Bradyrhizobium sp. NFR13 [FOTP]
57016
57092
+
Val
TAC
[ENA]
¡û
>W1710735597
LGHK01000134
Alphaproteobacteria
Bradyrhizobium sp. NAS96.2 [LGHK]
7379
7455
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK