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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146883 (54 seq.)
>W1710859268
LMCA01000001
Bacillota
Siminovitchia farraginis [LMCA]
6195
6271
+
Arg
TCT
[ENA]
¡û
>W1711005189
LQNF01000009
Bacillota
Oceanobacillus damuensis [LQNF]
19143
19219
+
Arg
TCT
[ENA]
¡û
>W131087725
AOCX01000015
Bacillota
Oceanobacillus kimchii X50 [AOCX]
987797
987722
-
Arg
TCT
[ENA]
¡û
>W1711078577
LSNA01000005
Bacillota
Oceanobacillus sp. E9 [LSNA]
212822
212897
+
Arg
TCT
[ENA]
¡û
>W1711624383
MPHG01000197
Bacillota
Bacillus obstructivus VT-16-70 [MPHG]
194327
194403
+
Arg
TCT
[ENA]
¡û
>W1711722897
MTLA01000094
Bacillota
Heyndrickxia oleronia oleronius [MTLA]
5948
6024
+
Arg
TCT
[ENA]
¡û
>C171067274
CP017762
Bacillota
Virgibacillus sp. 6R [CP017762]
373949
374024
+
Arg
TCT
-
¡û
>C171070697
CP017962
Bacillota
Virgibacillus halodenitrificans PDB-F2 [CP017962]
1529421
1529498
+
Arg
TCT
-
¡û
>W131043620
AMPQ01000004
Bacillota
Salimicrobium jeotgali MJ3 [AMPQ]
51450
51526
+
Arg
TCT
[ENA]
¡û
>C015451
BA000028
Bacillota
Oceanobacillus iheyensis HTE831 [BA000028]
2138993
2138920
-
Arg
TCT
[Ensembl]
¡û
>W141028971
ALEF01000029
Bacillota
Virgibacillus halodenitrificans 1806 [ALEF]
50422
50499
+
Arg
TCT
[ENA]
¡û
>W141239556
CAER01000057
Bacillota
Oceanobacillus massiliensis Ndiop [CAER]
35558
35482
-
Arg
TCT
[ENA]
¡û
>W141263898
CCDO010000008
Bacillota
Virgibacillus halodenitrificans [CCDO]
37343
37266
-
Arg
TCT
[ENA]
¡û
>W141451544
JFBD01000047
Bacillota
Virgibacillus alimentarius [JFBD]
36731
36808
+
Arg
TCT
[ENA]
¡û
>C181031696
CP018622
Bacillota
Virgibacillus dokdonensis 21D [CP018622]
3317490
3317415
-
Arg
TCT
-
¡û
>C181215987
LS483476
Bacillota
Lederbergia lenta NCTC4824 [LS483476]
1550327
1550402
+
Arg
TCT
-
¡û
>C191098974
CP033048
Bacillota
Virgibacillus sp. Bac330 [CP033048]
1336195
1336120
-
Arg
TCT
-
¡û
>C191099031
CP033049
Bacillota
Virgibacillus halodenitrificans Bac324 [CP033049]
1419597
1419521
-
Arg
TCT
-
¡û
>W1910371434
FUFM01000023
Bacillota
Virgibacillus pantothenticus Marseille-P1102 [FUFM]
207336
207261
-
Arg
TCT
[ENA]
¡û
>W1910371544
FUFO01000011
Bacillota
Oceanobacillus kimchii Marseille-P19319 [FUFO]
1225019
1224944
-
Arg
TCT
[ENA]
¡û
>W1910371637
FUFQ01000025
Bacillota
Oceanobacillus sojae SK-2 [FUFQ]
212067
211992
-
Arg
TCT
[ENA]
¡û
>W1910373735
FUHR01000007
Bacillota
Virgibacillus halodenitrificans Marseille-P736 [FUHR]
148236
148312
+
Arg
TCT
[ENA]
¡û
>W1910373778
FUHS01000006
Bacillota
Virgibacillus dakarensis Marseille-P3469 [FUHS]
102357
102283
-
Arg
TCT
[ENA]
¡û
>W1910374461
FUIH01000007
Bacillota
Virgibacillus siamensis Marseille-P2607 [FUIH]
1659742
1659667
-
Arg
TCT
[ENA]
¡û
>W1910399395
FUUZ01000016
Bacillota
Virgibacillus dokdonensis Marseille-P2545 [FUUZ]
1732300
1732225
-
Arg
TCT
[ENA]
¡û
>W1910437917
FVZB01000007
Bacillota
Halobacillus hunanensis Marseille-P3457 [FVZB]
1334161
1334087
-
Arg
TCT
[ENA]
¡û
>W1910469532
FWYO01000011
Bacillota
Oceanobacillus senegalensis Marseille-P3587 [FWYO]
238096
238171
+
Arg
TCT
[ENA]
¡û
>W1910505963
FYES01000003
Bacillota
Salimicrobium jeotgali [FYES]
187023
187097
+
Arg
TCT
[ENA]
¡û
>W1910546765
FZMZ01000005
Bacillota
Virgibacillus ndiopensis Marseille-P3835 [FZMZ]
913444
913369
-
Arg
TCT
[ENA]
¡û
>W1910896723
NFZX01000021
Bacillota
Virgibacillus dokdonensis AK90 [NFZX]
55609
55684
+
Arg
TCT
[ENA]
¡û
>W1911146409
NPDE01000007
Bacillota
Paenibacillus sp. 7884-2 [NPDE]
6842
6768
-
Arg
TCT
[ENA]
¡û
>W1911159696
NPMS01000001
Bacillota
Virgibacillus indicus IO3-P2-C2 [NPMS]
251643
251569
-
Arg
TCT
[ENA]
¡û
>W1911503979
OESR01000002
Actinomycetota
Citricoccus massiliensis Marseille-P4330 [OESR]
37982
38056
+
Arg
TCT
[ENA]
¡û
>W1911504044
OESS01000002
Bacillota
Halobacillus sp. Marseille-P3879 [OESS]
1178284
1178210
-
Arg
TCT
[ENA]
¡û
>W1911737787
QTSZ01000011
Bacillota
Ornithinibacillus gellani LJ137 [QTSZ]
29157
29082
-
Arg
TCT
[ENA]
¡û
>W1911748473
QWEH01000004
Bacillota
Oceanobacillus profundus DSM 18246 [QWEH]
170017
170091
+
Arg
TCT
[ENA]
¡û
>C151017817
CP007161
Bacillota
Virgibacillus sp. SK37 [CP007161]
1648053
1648130
+
Arg
TCT
[Ensembl]
¡û
>W1511706271
LGTO01000007
Bacillota
Virgibacillus pantothenticus DSM 26 [LGTO]
2532546
2532621
+
Arg
TCT
[ENA]
¡û
>W11177458
AGAV01000025
Bacillota
Lentibacillus jeotgali Grbi [AGAV]
131717
131792
+
Arg
TCT
[ENA]
¡û
>W1610042498
BAXT01000021
Bacillota
Oceanobacillus sp. JCM 19060 [BAXT]
64777
64702
-
Arg
TCT
[ENA]
¡û
>W1610043353
BAZS01000002
Bacillota
Virgibacillus halodenitrificans JCM 12304 [BAZS]
29391
29468
+
Arg
TCT
[ENA]
¡û
>W1610072583
BCVC01000001
Bacillota
Lederbergia lenta NBRC 16444 [BCVC]
669718
669793
+
Arg
TCT
[ENA]
¡û
>W1610721614
LMCA01000001
Bacillota
Siminovitchia farraginis [LMCA]
6195
6271
+
Arg
TCT
[ENA]
¡û
>W1610855839
LQNF01000009
Bacillota
Oceanobacillus damuensis [LQNF]
19143
19219
+
Arg
TCT
[ENA]
¡û
>W1710039592
BAXT01000021
Bacillota
Oceanobacillus sp. JCM 19060 [BAXT]
64777
64702
-
Arg
TCT
[ENA]
¡û
>W1710040513
BAZS01000002
Bacillota
Virgibacillus halodenitrificans JCM 12304 [BAZS]
29391
29468
+
Arg
TCT
[ENA]
¡û
>W1710069701
BCVC01000001
Bacillota
Lederbergia lenta NBRC 16444 [BCVC]
669718
669793
+
Arg
TCT
[ENA]
¡û
>W1710519136
FNEN01000003
Bacillota
Natribacillus halophilus [FNEN]
267655
267731
+
Arg
TCT
[ENA]
¡û
>W1710552915
FOHE01000011
Bacillota
Oceanobacillus limi [FOHE]
38298
38223
-
Arg
TCT
[ENA]
¡û
>W1710555989
FOJW01000026
Bacillota
Lentibacillus halodurans [FOJW]
2831
2757
-
Arg
TCT
[ENA]
¡û
>W1710559474
FOMR01000002
Bacillota
Lentibacillus persicus [FOMR]
283696
283770
+
Arg
TCT
[ENA]
¡û
>W1710586345
FQXD01000001
Bacillota
Virgibacillus chiguensis [FQXD]
426586
426661
+
Arg
TCT
[ENA]
¡û
>W1710598996
FTOK01000002
Bacillota
Salimicrobium salexigens [FTOK]
87253
87328
+
Arg
TCT
[ENA]
¡û
>W1710599428
FTOS01000010
Bacillota
Virgibacillus pantothenticus [FTOS]
42257
42182
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK