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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146903 (54 seq.)
>W1710862290
LMEG01000034
Alphaproteobacteria
Ensifer sp. Root423 [LMEG]
294819
294743
-
Arg
CCT
[ENA]
¡û
>W1710862635
LMEN01000035
Alphaproteobacteria
Ensifer sp. Root1298 [LMEN]
27115
27191
+
Arg
CCT
[ENA]
¡û
>W1710862952
LMES01000034
Alphaproteobacteria
Ensifer sp. Root1312 [LMES]
27118
27194
+
Arg
CCT
[ENA]
¡û
>W1710864735
LMGC01000033
Alphaproteobacteria
Ensifer sp. Root558 [LMGC]
445399
445323
-
Arg
CCT
[ENA]
¡û
>W1710867521
LMII01000038
Alphaproteobacteria
Ensifer sp. Root74 [LMII]
27115
27191
+
Arg
CCT
[ENA]
¡û
>W1710868917
LMJM01000022
Alphaproteobacteria
Ensifer sp. Root954 [LMJM]
414279
414203
-
Arg
CCT
[ENA]
¡û
>W1711081109
LSRO01000145
Alphaproteobacteria
Rhizobium sp. 58 [LSRO]
2072
1996
-
Arg
CCT
[ENA]
¡û
>W1711081153
LSRP01000142
Alphaproteobacteria
Pararhizobium antarcticum 59 [LSRP]
2072
1996
-
Arg
CCT
[ENA]
¡û
>W1711169128
LVYU01000079
Alphaproteobacteria
Rhizobium leguminosarum [LVYU]
190808
190884
+
Arg
CCT
[ENA]
¡û
>W1711501879
MKSC01000832
Alphaproteobacteria
Shinella sp. 65-6 [MKSC]
3761
3837
+
Arg
CCT
[ENA]
¡û
>W1711679629
MRVD01000002
Alphaproteobacteria
Ensifer adhaerens [MRVD]
27145
27221
+
Arg
CCT
[ENA]
¡û
>C171020998
CP013107
Alphaproteobacteria
Sinorhizobium americanum CFNEI 73 [CP013107]
3432250
3432326
+
Arg
CCT
-
¡û
>C171049825
CP016450
Alphaproteobacteria
Sinorhizobium sp. RAC02 [CP016450]
3641826
3641902
+
Arg
CCT
-
¡û
>C171117298
CP021219
Alphaproteobacteria
Sinorhizobium meliloti RU11/001 [CP021219]
1553855
1553779
-
Arg
CCT
-
¡û
>C171123404
CP021797
Alphaproteobacteria
Sinorhizobium meliloti USDA1106 [CP021797]
2100061
2099985
-
Arg
CCT
-
¡û
>C171123660
CP021818
Alphaproteobacteria
Sinorhizobium meliloti M162 [CP021818]
3482547
3482623
+
Arg
CCT
-
¡û
>W141022645
AJUI01000027
Alphaproteobacteria
Rhizobium leguminosarum bv. trifolii CC278f [AJUI]
288366
288290
-
Arg
CCT
[ENA]
¡û
>W141187474
AYLZ02000169
Alphaproteobacteria
Shinella sp. DD12 [AYLZ]
3758
3834
+
Arg
CCT
[ENA]
¡û
>WENV183729424
PJTQ01037869
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
155
79
-
Arg
CCT
[ENA]
¢þ
>WENV183740973
PJUF01023312
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
338
262
-
Arg
CCT
[ENA]
¢þ
>WENV183744424
PJUK01023465
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
224
148
-
Arg
CCT
[ENA]
¢þ
>WENV183745297
PJUL01018932
[PJUL] feces metagenome; Chicken feces enriched on filter paper
260
184
-
Arg
CCT
[ENA]
¢þ
>WENV170011318
APMI01055732
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
4638
4714
+
Arg
CCT
[ENA]
¢þ
>WENV171003562
NNBU01000462
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
3280
3204
-
Arg
CCT
[ENA]
¢þ
>W141726264
JNAE01000159
Alphaproteobacteria
Ensifer adhaerens [JNAE]
27166
27242
+
Arg
CCT
[ENA]
¡û
>W1910831922
MYFN01000008
Alphaproteobacteria
Shinella sumterensis MEC089 [MYFN]
174480
174556
+
Arg
CCT
[ENA]
¡û
>W1910832097
MYFQ01000010
Alphaproteobacteria
Shinella sumterensis MEC087 [MYFQ]
174488
174564
+
Arg
CCT
[ENA]
¡û
>W1910891721
NEXT01000007
Alphaproteobacteria
Sinorhizobium sp. LM21 [NEXT]
347939
347863
-
Arg
CCT
[ENA]
¡û
>W1911495647
OBQD01000011
Alphaproteobacteria
Rhizobium subbaraonis JC85 [OBQD]
179767
179691
-
Arg
CCT
[ENA]
¡û
>W1911614500
POVM01000010
Alphaproteobacteria
Sinorhizobium meliloti 320 [POVM]
27116
27192
+
Arg
CCT
[ENA]
¡û
>W1911701497
QNUJ01000016
Alphaproteobacteria
Shinella zoogloeoides PQ7 [QNUJ]
40369
40445
+
Arg
CCT
[ENA]
¡û
>W1810463989
PZZZ01000003
Alphaproteobacteria
Mycoplana dimorpha DSM 7138 [PZZZ]
590566
590490
-
Arg
CCT
[ENA]
¡û
>W1810670704
QJRY01000003
Alphaproteobacteria
Rhizobium wuzhouense W44 [QJRY]
114760
114836
+
Arg
CCT
[ENA]
¡û
>W1810671982
QJTB01000006
Alphaproteobacteria
Ensifer adhaerens WJB133 25_10 [QJTB]
293676
293600
-
Arg
CCT
[ENA]
¡û
>W1810696420
QLTH01000031
Alphaproteobacteria
Ensifer adhaerens AG1206 [QLTH]
27111
27187
+
Arg
CCT
[ENA]
¡û
>W1810917631
QWBU01000013
Alphaproteobacteria
Shinella sp. WSJ-2 [QWBU]
41308
41384
+
Arg
CCT
[ENA]
¡û
>W1511403321
JTLA01000038
Alphaproteobacteria
Ensifer sp. ZNC0028 [JTLA]
29249
29173
-
Arg
CCT
[ENA]
¡û
>C161090418
CP015736
Alphaproteobacteria
Shinella sp. HZN7 [CP015736]
3969637
3969561
-
Arg
CCT
[Ensembl]
¡û
>C161092087
CP015880
Alphaproteobacteria
Ensifer adhaerens Casida A [CP015880]
3331083
3331159
+
Arg
CCT
[Ensembl]
¡û
>W121066169
AJQP01000139
Alphaproteobacteria
Sinorhizobium fredii CCBAU 83622 [AJQP]
79629
79705
+
Arg
CCT
[ENA]
¡û
>W121066272
AJQR01000288
Alphaproteobacteria
Sinorhizobium fredii CCBAU 83666 [AJQR]
35328
35404
+
Arg
CCT
[ENA]
¡û
>W121066307
AJQS01000127
Alphaproteobacteria
Sinorhizobium fredii CCBAU 83753 [AJQS]
1303
1227
-
Arg
CCT
[ENA]
¡û
>W1610024635
AUSY01000086
Alphaproteobacteria
Sinorhizobium sp. GW3 [AUSY]
27142
27218
+
Arg
CCT
[ENA]
¡û
>W1610724636
LMEG01000034
Alphaproteobacteria
Ensifer sp. Root423 [LMEG]
294819
294743
-
Arg
CCT
[ENA]
¡û
>W1610724981
LMEN01000035
Alphaproteobacteria
Ensifer sp. Root1298 [LMEN]
27115
27191
+
Arg
CCT
[ENA]
¡û
>W1610725298
LMES01000034
Alphaproteobacteria
Ensifer sp. Root1312 [LMES]
27118
27194
+
Arg
CCT
[ENA]
¡û
>W1610727081
LMGC01000033
Alphaproteobacteria
Ensifer sp. Root558 [LMGC]
445399
445323
-
Arg
CCT
[ENA]
¡û
>W1610729867
LMII01000038
Alphaproteobacteria
Ensifer sp. Root74 [LMII]
27115
27191
+
Arg
CCT
[ENA]
¡û
>W1610731263
LMJM01000022
Alphaproteobacteria
Ensifer sp. Root954 [LMJM]
414279
414203
-
Arg
CCT
[ENA]
¡û
>W1610978923
LVYU01000079
Alphaproteobacteria
Rhizobium leguminosarum [LVYU]
190808
190884
+
Arg
CCT
[ENA]
¡û
>W1710021076
AUSY01000086
Alphaproteobacteria
Sinorhizobium sp. GW3 [AUSY]
27142
27218
+
Arg
CCT
[ENA]
¡û
>W1710521797
FNGR01000004
Alphaproteobacteria
Ensifer sp. YR511 [FNGR]
388949
388873
-
Arg
CCT
[ENA]
¡û
>W1710561951
FOON01000004
Alphaproteobacteria
Ensifer sp. OV372 [FOON]
27328
27404
+
Arg
CCT
[ENA]
¡û
>W1710698076
LAZS01000014
Alphaproteobacteria
Ensifer adhaerens [LAZS]
31693
31769
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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