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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146927 (69 seq.)
>W1710785172
LJHQ01000010
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
50043
50119
+
Pro
TGG
[ENA]
¡û
>W1710858020
LMAR01000033
Alphaproteobacteria
Bosea thiooxidans [LMAR]
187310
187234
-
Pro
TGG
[ENA]
¡û
>W1710869471
LMJT01000007
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
81499
81575
+
Pro
TGG
[ENA]
¡û
>W1710869517
LMJU01000012
Alphaproteobacteria
Bosea sp. Root670 [LMJU]
213943
214019
+
Pro
TGG
[ENA]
¡û
>W1710869649
LMJW01000022
Alphaproteobacteria
Bosea sp. Root483D1 [LMJW]
464492
464568
+
Pro
TGG
[ENA]
¡û
>W1710879529
LMRT01000014
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
1010743
1010667
-
Pro
TGG
[ENA]
¡û
>W1710893354
LNER01000189
Alphaproteobacteria
Rhizobiales bacterium Ga0074135 [LNER]
3310
3234
-
Pro
TGG
[ENA]
¡û
>W1711072935
LSIB01000064
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
53886
53810
-
Pro
TGG
[ENA]
¡û
>W1711073150
LSIG01000217
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
40689
40765
+
Pro
TGG
[ENA]
¡û
>W1711073288
LSIK01000072
Alphaproteobacteria
Rhizobiales bacterium CCH9-A3 [LSIK]
41177
41253
+
Pro
TGG
[ENA]
¡û
>W1711074366
LSJL01000205
Alphaproteobacteria
Bradyrhizobium sp. CCH5-A9 [LSJL]
30651
30727
+
Pro
TGG
[ENA]
¡û
>W1711074580
LSJR01000014
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
5436
5360
-
Pro
TGG
[ENA]
¡û
>W1711074732
LSJU01000892
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
2409
2485
+
Pro
TGG
[ENA]
¡û
>W1711074773
LSJV01000131
Alphaproteobacteria
Rhizobiales bacterium CCH11-D2 [LSJV]
41177
41253
+
Pro
TGG
[ENA]
¡û
>W1711074850
LSJX01000130
Alphaproteobacteria
Rhizobiales bacterium CCH2-A4 [LSJX]
30639
30715
+
Pro
TGG
[ENA]
¡û
>W1711385481
MEEG01000163
Alphaproteobacteria
Methylobacterium sp. SCN 67-24 [MEEG]
22326
22402
+
Pro
TGG
[ENA]
¡û
>W1711502399
MKSQ01000025
Alphaproteobacteria
Bosea sp. 67-29 [MKSQ]
73752
73676
-
Pro
TGG
[ENA]
¡û
>C171049964
CP016464
Alphaproteobacteria
Bosea sp. RAC05 [CP016464]
2981447
2981523
+
Pro
TGG
-
¡û
>C171057739
CP017147
Alphaproteobacteria
Bosea vaviloviae Vaf18 [CP017147]
3981669
3981745
+
Pro
TGG
-
¡û
>WENV181227059
OFDN01001368
[OFDN] hot springs metagenome; Water
11866
11790
-
Pro
TGG
[ENA]
¢þ
>WENV181415426
OGCL01010819
[OGCL] hot springs metagenome; Hot spring water
2055
2131
+
Pro
TGG
[ENA]
¢þ
>WENV170010029
APMI01007009
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1827
1751
-
Pro
TGG
[ENA]
¢þ
>WENV170011905
APMI01100957
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2853
2777
-
Pro
TGG
[ENA]
¢þ
>WENV170680989
LFEF01039879
[LFEF] freshwater metagenome; waterbloom
11262
11338
+
Pro
TGG
[ENA]
¢þ
>WENV170711307
LNFM01004478
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
27565
27641
+
Pro
TGG
[ENA]
¢þ
>WENV171003182
NNBT01002185
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
44876
44800
-
Pro
TGG
[ENA]
¢þ
>WENV171003753
NNBV01000600
[NNBV] plant metagenome; symbiotic tissue sample KVS11
179593
179517
-
Pro
TGG
[ENA]
¢þ
>C181063189
CP022372
Alphaproteobacteria
Bosea sp. AS-1 [CP022372]
2101495
2101571
+
Pro
TGG
-
¡û
>C191014039
CP017946
Alphaproteobacteria
Bosea sp. Tri-49 [CP017946]
1686194
1686118
-
Pro
TGG
-
¡û
>W141805302
JPKG01000034
Alphaproteobacteria
Bosea sp. LC85 [JPKG]
234684
234608
-
Pro
TGG
[ENA]
¡û
>W141815794
JQJJ01000008
Alphaproteobacteria
Bosea sp. UNC402CLCol [JQJJ]
257475
257399
-
Pro
TGG
[ENA]
¡û
>W1910501708
FYAS01000007
Alphaproteobacteria
Bosea sp. CS1GBMeth4 [FYAS]
195378
195454
+
Pro
TGG
[ENA]
¡û
>W1910635389
LNCQ01000006
Alphaproteobacteria
Bosea sp. FBZP-16 FBZP-16 [LNCQ]
254356
254432
+
Pro
TGG
[ENA]
¡û
>W1910840143
MZXT01000016
Alphaproteobacteria
Bosea sp. Tri-39 [MZXT]
148730
148654
-
Pro
TGG
[ENA]
¡û
>W1910840186
MZXU01000017
Alphaproteobacteria
Bosea sp. Tri-54 [MZXU]
2264772
2264696
-
Pro
TGG
[ENA]
¡û
>W1810252024
PQFZ01000018
Alphaproteobacteria
Bosea psychrotolerans 1131 [PQFZ]
83095
83019
-
Pro
TGG
[ENA]
¡û
>W1810463364
PZZM01000001
Alphaproteobacteria
Bosea sp. 124 [PZZM]
4588516
4588592
+
Pro
TGG
[ENA]
¡û
>W1810676912
QKMI01000012
Alphaproteobacteria
Bosea sp. CF476 [QKMI]
165330
165406
+
Pro
TGG
[ENA]
¡û
>W1810783323
QQTO01000033
Alphaproteobacteria
Bosea caraganae RCAM04680 [QQTO]
450156
450232
+
Pro
TGG
[ENA]
¡û
>W1810783358
QQTP01000012
Alphaproteobacteria
Bosea caraganae RCAM04685 [QQTP]
133383
133459
+
Pro
TGG
[ENA]
¡û
>W1511353006
JROW01000066
Alphaproteobacteria
Methylobacterium sp. ZNC0032 [JROW]
2193
2117
-
Pro
TGG
[ENA]
¡û
>C161070668
CP014301
Alphaproteobacteria
Bosea sp. PAMC 26642 [CP014301]
1241611
1241687
+
Pro
TGG
[Ensembl]
¡û
>W1610550628
JXTJ01000008
Alphaproteobacteria
Bosea sp. WAO [JXTJ]
756355
756431
+
Pro
TGG
[ENA]
¡û
>W1610617178
LGSZ01000050
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
56686
56610
-
Pro
TGG
[ENA]
¡û
>W1610648978
LJHQ01000010
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
50043
50119
+
Pro
TGG
[ENA]
¡û
>W1610720366
LMAR01000033
Alphaproteobacteria
Bosea thiooxidans [LMAR]
187310
187234
-
Pro
TGG
[ENA]
¡û
>W1610731817
LMJT01000007
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
81499
81575
+
Pro
TGG
[ENA]
¡û
>W1610731863
LMJU01000012
Alphaproteobacteria
Bosea sp. Root670 [LMJU]
213943
214019
+
Pro
TGG
[ENA]
¡û
>W1610731995
LMJW01000022
Alphaproteobacteria
Bosea sp. Root483D1 [LMJW]
464492
464568
+
Pro
TGG
[ENA]
¡û
>W1610741875
LMRT01000014
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
1010743
1010667
-
Pro
TGG
[ENA]
¡û
>W1610753620
LNER01000189
Alphaproteobacteria
Rhizobiales bacterium Ga0074135 [LNER]
3310
3234
-
Pro
TGG
[ENA]
¡û
>W1610912195
LSIB01000064
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
53886
53810
-
Pro
TGG
[ENA]
¡û
>W1610912455
LSIG01000217
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
40689
40765
+
Pro
TGG
[ENA]
¡û
>W1610912593
LSIK01000072
Alphaproteobacteria
Rhizobiales bacterium CCH9-A3 [LSIK]
41177
41253
+
Pro
TGG
[ENA]
¡û
>W1610913671
LSJL01000205
Alphaproteobacteria
Bradyrhizobium sp. CCH5-A9 [LSJL]
30651
30727
+
Pro
TGG
[ENA]
¡û
>W1610913885
LSJR01000014
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
5436
5360
-
Pro
TGG
[ENA]
¡û
>W1610914037
LSJU01000892
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
2409
2485
+
Pro
TGG
[ENA]
¡û
>W1610914078
LSJV01000131
Alphaproteobacteria
Rhizobiales bacterium CCH11-D2 [LSJV]
41177
41253
+
Pro
TGG
[ENA]
¡û
>W1610914155
LSJX01000130
Alphaproteobacteria
Rhizobiales bacterium CCH2-A4 [LSJX]
30639
30715
+
Pro
TGG
[ENA]
¡û
>W1710064190
BCQA01000001
Alphaproteobacteria
Bosea sp. BIWAKO-01 [BCQA]
4895681
4895757
+
Pro
TGG
[ENA]
¡û
>W1710515687
FNBZ01000002
Alphaproteobacteria
Bosea robiniae [FNBZ]
503263
503339
+
Pro
TGG
[ENA]
¡û
>W1710538969
FNUY01000013
Alphaproteobacteria
Bosea lathyri [FNUY]
12102
12026
-
Pro
TGG
[ENA]
¡û
>W1710544012
FOAN01000001
Alphaproteobacteria
Bosea lupini [FOAN]
650498
650422
-
Pro
TGG
[ENA]
¡û
>W1710557006
FOKP01000025
Alphaproteobacteria
Bosea sp. CRIB-10 DSM 18164 [FOKP]
21380
21304
-
Pro
TGG
[ENA]
¡û
>W1710564895
FOQV01000001
Alphaproteobacteria
Bosea sp. OK403 [FOQV]
573234
573310
+
Pro
TGG
[ENA]
¡û
>W1710596433
FTMO01000002
Alphaproteobacteria
Bosea sp. TND4EK4 [FTMO]
47698
47622
-
Pro
TGG
[ENA]
¡û
>W1710603262
FUYX01000001
Alphaproteobacteria
Bosea thiooxidans [FUYX]
48495
48419
-
Pro
TGG
[ENA]
¡û
>W1710660463
JXTJ01000008
Alphaproteobacteria
Bosea sp. WAO [JXTJ]
756355
756431
+
Pro
TGG
[ENA]
¡û
>W1710742792
LGSZ01000050
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
56686
56610
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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