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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146968 (101 seq.)
>W1710878934
LMRJ01000007
Bacillota
Bacillus sp. Leaf13 [LMRJ]
113734
113658
-
Arg
ACG
[ENA]
¡û
>W1710878978
LMRJ01000032
Bacillota
Bacillus sp. Leaf13 [LMRJ]
35854
35930
+
Arg
ACG
[ENA]
¡û
>W1710881291
LMSZ01000015
Bacillota
Bacillus sp. Soil745 [LMSZ]
34124
34200
+
Arg
ACG
[ENA]
¡û
>W1710881301
LMSZ01000029
Bacillota
Bacillus sp. Soil745 [LMSZ]
674
750
+
Arg
ACG
[ENA]
¡û
>W1710881318
LMSZ01000036
Bacillota
Bacillus sp. Soil745 [LMSZ]
222993
222917
-
Arg
ACG
[ENA]
¡û
>W1710881376
LMTA01000027
Bacillota
Bacillus sp. Soil768D1 [LMTA]
435
359
-
Arg
ACG
[ENA]
¡û
>W1710881391
LMTA01000088
Bacillota
Bacillus sp. Soil768D1 [LMTA]
751
827
+
Arg
ACG
[ENA]
¡û
>W1710881411
LMTA01000100
Bacillota
Bacillus sp. Soil768D1 [LMTA]
411
335
-
Arg
ACG
[ENA]
¡û
>W1710905469
LNNH01000017
Bacillota
Peribacillus simplex [LNNH]
145909
145833
-
Arg
ACG
[ENA]
¡û
>W1710905510
LNNH01000046
Bacillota
Peribacillus simplex [LNNH]
160462
160538
+
Arg
ACG
[ENA]
¡û
>W1710905538
LNNH01000048
Bacillota
Peribacillus simplex [LNNH]
1266
1190
-
Arg
ACG
[ENA]
¡û
>W1711130479
LUUS01000001
Bacillota
Peribacillus frigoritolerans [LUUS]
830937
831013
+
Arg
ACG
[ENA]
¡û
>W1711130503
LUUS01000001
Bacillota
Peribacillus frigoritolerans [LUUS]
155545
155469
-
Arg
ACG
[ENA]
¡û
>W1711130550
LUUS01000005
Bacillota
Peribacillus frigoritolerans [LUUS]
143400
143324
-
Arg
ACG
[ENA]
¡û
>W1711182031
LWJH01000003
Bacillota
Bacillus sp. FJAT-20673 [LWJH]
871137
871213
+
Arg
ACG
[ENA]
¡û
>W1711182055
LWJH01000003
Bacillota
Bacillus sp. FJAT-20673 [LWJH]
198541
198465
-
Arg
ACG
[ENA]
¡û
>W1711182075
LWJH01000003
Bacillota
Bacillus sp. FJAT-20673 [LWJH]
1186
1110
-
Arg
ACG
[ENA]
¡û
>W1711182178
LWJJ01000063
Bacillota
Peribacillus simplex [LWJJ]
12043
11967
-
Arg
ACG
[ENA]
¡û
>W1711182199
LWJJ01000066
Bacillota
Peribacillus simplex [LWJJ]
639
563
-
Arg
ACG
[ENA]
¡û
>W1711182218
LWJJ01000078
Bacillota
Peribacillus simplex [LWJJ]
1998
2074
+
Arg
ACG
[ENA]
¡û
>C171056622
CP017080
Bacillota
Peribacillus muralis G25-68 [CP017080]
295337
295413
+
Arg
ACG
-
¡û
>C171056642
CP017080
Bacillota
Peribacillus muralis G25-68 [CP017080]
4305722
4305646
-
Arg
ACG
-
¡û
>W141022303
AJTN02000120
Bacillota
Peribacillus psychrosaccharolyticus ATCC 23296 [AJTN]
287
211
-
Arg
ACG
[ENA]
¡û
>W141022316
AJTN02000160
Bacillota
Peribacillus psychrosaccharolyticus ATCC 23296 [AJTN]
274
198
-
Arg
ACG
[ENA]
¡û
>W141022326
AJTN02000176
Bacillota
Peribacillus psychrosaccharolyticus ATCC 23296 [AJTN]
37526
37452
-
Arg
ACG
[ENA]
¡û
>C181027462
CP017704
Bacillota
Peribacillus simplex NBRC 15720 = DSM 1321 [CP017704]
3160679
3160755
+
Arg
ACG
-
¡û
>C181027503
CP017704
Bacillota
Peribacillus simplex NBRC 15720 = DSM 1321 [CP017704]
2279155
2279079
-
Arg
ACG
-
¡û
>C181194397
CP030926
Bacillota
Peribacillus butanolivorans PHB-7a [CP030926]
2745997
2746073
+
Arg
ACG
-
¡û
>C181194431
CP030926
Bacillota
Peribacillus butanolivorans PHB-7a [CP030926]
1821457
1821381
-
Arg
ACG
-
¡û
>C191071761
CP030063
Bacillota
Peribacillus frigoritolerans ZB201705 [CP030063]
3895178
3895254
+
Arg
ACG
-
¡û
>C191071790
CP030063
Bacillota
Peribacillus frigoritolerans ZB201705 [CP030063]
3220531
3220455
-
Arg
ACG
-
¡û
>C191071810
CP030063
Bacillota
Peribacillus frigoritolerans ZB201705 [CP030063]
3024819
3024743
-
Arg
ACG
-
¡û
>W1910225519
FMSO01000013
Bacillota
Bacillus massiliglaciei Marseille-P2600 [FMSO]
23965
24041
+
Arg
ACG
[ENA]
¡û
>W1910549390
FZPG01000006
Bacillota
Bacillus sp. OK838 [FZPG]
663
739
+
Arg
ACG
[ENA]
¡û
>W1910549446
FZPG01000054
Bacillota
Bacillus sp. OK838 [FZPG]
361
285
-
Arg
ACG
[ENA]
¡û
>W1910549456
FZPG01000092
Bacillota
Bacillus sp. OK838 [FZPG]
479
403
-
Arg
ACG
[ENA]
¡û
>W1910755548
MKYS01000011
Bacillota
Peribacillus simplex 313 [MKYS]
170498
170422
-
Arg
ACG
[ENA]
¡û
>W1910755601
MKYS01000035
Bacillota
Peribacillus simplex 313 [MKYS]
33774
33850
+
Arg
ACG
[ENA]
¡û
>W1910755611
MKYS01000056
Bacillota
Peribacillus simplex 313 [MKYS]
608
532
-
Arg
ACG
[ENA]
¡û
>W1910871126
NCWW01000057
Bacillota
Peribacillus simplex OG2 [NCWW]
531
455
-
Arg
ACG
[ENA]
¡û
>W1911298397
NTTZ01000001
Bacillota
Bacillus sp. AFS017274 [NTTZ]
213
289
+
Arg
ACG
[ENA]
¡û
>W1911298463
NTTZ01000065
Bacillota
Bacillus sp. AFS017274 [NTTZ]
217
293
+
Arg
ACG
[ENA]
¡û
>W1911311218
NUBA01000109
Bacillota
Bacillus sp. AFS026049 [NUBA]
330
254
-
Arg
ACG
[ENA]
¡û
>W1911317743
NUEQ01000028
Bacillota
Peribacillus butanolivorans AFS003229 [NUEQ]
287
211
-
Arg
ACG
[ENA]
¡û
>W1911343161
NUSS01000039
Bacillota
Bacillus sp. AFS043905 [NUSS]
93459
93383
-
Arg
ACG
[ENA]
¡û
>W1911343191
NUSS01000074
Bacillota
Bacillus sp. AFS043905 [NUSS]
513
589
+
Arg
ACG
[ENA]
¡û
>W1911381486
NVNR01000043
Bacillota
Bacillus sp. AFS094228 [NVNR]
289
213
-
Arg
ACG
[ENA]
¡û
>W1911381495
NVNR01000049
Bacillota
Bacillus sp. AFS094228 [NVNR]
596
672
+
Arg
ACG
[ENA]
¡û
>W1911405123
NWQJ01000018
Bacillota
Peribacillus simplex WY10 [NWQJ]
279
355
+
Arg
ACG
[ENA]
¡û
>W1911405149
NWQJ01000023
Bacillota
Peribacillus simplex WY10 [NWQJ]
413
337
-
Arg
ACG
[ENA]
¡û
>W1810115797
PHNG01000004
Bacillota
Bacillus sp. mrc49 [PHNG]
527
603
+
Arg
ACG
[ENA]
¡û
>W1810115805
PHNG01000230
Bacillota
Bacillus sp. mrc49 [PHNG]
546
622
+
Arg
ACG
[ENA]
¡û
>W1810115822
PHNG01000583
Bacillota
Bacillus sp. mrc49 [PHNG]
787
711
-
Arg
ACG
[ENA]
¡û
>W1810115833
PHNG01000637
Bacillota
Bacillus sp. mrc49 [PHNG]
249
173
-
Arg
ACG
[ENA]
¡û
>W1810115858
PHNG01000713
Bacillota
Bacillus sp. mrc49 [PHNG]
1155
1231
+
Arg
ACG
[ENA]
¡û
>W1810120801
PHTX01000001
Bacillota
Viridibacillus sp. OK051 [PHTX]
1544330
1544406
+
Arg
ACG
[ENA]
¡û
>W1810120819
PHTX01000001
Bacillota
Viridibacillus sp. OK051 [PHTX]
1823771
1823847
+
Arg
ACG
[ENA]
¡û
>W1810120847
PHTX01000001
Bacillota
Viridibacillus sp. OK051 [PHTX]
2419057
2419133
+
Arg
ACG
[ENA]
¡û
>W1810154770
PIZR01000009
Bacillota
Bacillus sp. BA3 [PIZR]
118935
118859
-
Arg
ACG
[ENA]
¡û
>W1810154805
PIZR01000017
Bacillota
Bacillus sp. BA3 [PIZR]
923
847
-
Arg
ACG
[ENA]
¡û
>W1810154817
PIZR01000033
Bacillota
Bacillus sp. BA3 [PIZR]
609
533
-
Arg
ACG
[ENA]
¡û
>W1810361153
PVQJ01000010
Bacillota
Bacillus sp. RJGP41 [PVQJ]
156135
156059
-
Arg
ACG
[ENA]
¡û
>W1810361204
PVQJ01000033
Bacillota
Bacillus sp. RJGP41 [PVQJ]
462
386
-
Arg
ACG
[ENA]
¡û
>W1810361214
PVQJ01000061
Bacillota
Bacillus sp. RJGP41 [PVQJ]
832
908
+
Arg
ACG
[ENA]
¡û
>W1810915228
QVTC01000089
Bacillota
Bacillus sp. V59.32b V59.32a [QVTC]
32176
32252
+
Arg
ACG
[ENA]
¡û
>W1510061101
CCXW01000002
Bacillota
Peribacillus simplex P558 [CCXW]
270865
270789
-
Arg
ACG
[ENA]
¡û
>W1511504911
JXIQ01000048
Bacillota
Mesobacillus subterraneus MITOT1 [JXIQ]
282
358
+
Arg
ACG
[ENA]
¡û
>C161031011
CP011008
Bacillota
Peribacillus simplex SH-B26 [CP011008]
92723
92799
+
Arg
ACG
[Ensembl]
¡û
>C161031031
CP011008
Bacillota
Peribacillus simplex SH-B26 [CP011008]
283482
283558
+
Arg
ACG
[Ensembl]
¡û
>C161031065
CP011008
Bacillota
Peribacillus simplex SH-B26 [CP011008]
4756524
4756448
-
Arg
ACG
[Ensembl]
¡û
>W1610029494
AXBR01000004
Bacillota
Peribacillus simplex BA2H3 [AXBR]
41273
41197
-
Arg
ACG
[ENA]
¡û
>W1610029508
AXBR01000014
Bacillota
Peribacillus simplex BA2H3 [AXBR]
2777
2853
+
Arg
ACG
[ENA]
¡û
>W1610586297
LDGI01000012
Bacillota
Peribacillus muralis G25-68 [LDGI]
691
615
-
Arg
ACG
[ENA]
¡û
>W1610586308
LDGI01000013
Bacillota
Peribacillus muralis G25-68 [LDGI]
646
570
-
Arg
ACG
[ENA]
¡û
>W1610586322
LDGI01000021
Bacillota
Peribacillus muralis G25-68 [LDGI]
3695
3771
+
Arg
ACG
[ENA]
¡û
>W1610741280
LMRJ01000007
Bacillota
Bacillus sp. Leaf13 [LMRJ]
113734
113658
-
Arg
ACG
[ENA]
¡û
>W1610741324
LMRJ01000032
Bacillota
Bacillus sp. Leaf13 [LMRJ]
35854
35930
+
Arg
ACG
[ENA]
¡û
>W1610743637
LMSZ01000015
Bacillota
Bacillus sp. Soil745 [LMSZ]
34124
34200
+
Arg
ACG
[ENA]
¡û
>W1610743647
LMSZ01000029
Bacillota
Bacillus sp. Soil745 [LMSZ]
674
750
+
Arg
ACG
[ENA]
¡û
>W1610743664
LMSZ01000036
Bacillota
Bacillus sp. Soil745 [LMSZ]
222993
222917
-
Arg
ACG
[ENA]
¡û
>W1610743722
LMTA01000027
Bacillota
Bacillus sp. Soil768D1 [LMTA]
435
359
-
Arg
ACG
[ENA]
¡û
>W1610743737
LMTA01000088
Bacillota
Bacillus sp. Soil768D1 [LMTA]
751
827
+
Arg
ACG
[ENA]
¡û
>W1610743757
LMTA01000100
Bacillota
Bacillus sp. Soil768D1 [LMTA]
411
335
-
Arg
ACG
[ENA]
¡û
>W1610764483
LNNH01000017
Bacillota
Peribacillus simplex [LNNH]
145909
145833
-
Arg
ACG
[ENA]
¡û
>W1610764524
LNNH01000046
Bacillota
Peribacillus simplex [LNNH]
160462
160538
+
Arg
ACG
[ENA]
¡û
>W1610764552
LNNH01000048
Bacillota
Peribacillus simplex [LNNH]
1266
1190
-
Arg
ACG
[ENA]
¡û
>W1610941552
LUUS01000001
Bacillota
Peribacillus frigoritolerans [LUUS]
830937
831013
+
Arg
ACG
[ENA]
¡û
>W1610941576
LUUS01000001
Bacillota
Peribacillus frigoritolerans [LUUS]
155545
155469
-
Arg
ACG
[ENA]
¡û
>W1610941623
LUUS01000005
Bacillota
Peribacillus frigoritolerans [LUUS]
143400
143324
-
Arg
ACG
[ENA]
¡û
>W1610989248
LWJH01000003
Bacillota
Bacillus sp. FJAT-20673 [LWJH]
871137
871213
+
Arg
ACG
[ENA]
¡û
>W1610989272
LWJH01000003
Bacillota
Bacillus sp. FJAT-20673 [LWJH]
198541
198465
-
Arg
ACG
[ENA]
¡û
>W1610989292
LWJH01000003
Bacillota
Bacillus sp. FJAT-20673 [LWJH]
1186
1110
-
Arg
ACG
[ENA]
¡û
>W1610989395
LWJJ01000063
Bacillota
Peribacillus simplex [LWJJ]
12043
11967
-
Arg
ACG
[ENA]
¡û
>W1610989416
LWJJ01000066
Bacillota
Peribacillus simplex [LWJJ]
639
563
-
Arg
ACG
[ENA]
¡û
>W1610989435
LWJJ01000078
Bacillota
Peribacillus simplex [LWJJ]
1998
2074
+
Arg
ACG
[ENA]
¡û
>W1710026864
AXBR01000004
Bacillota
Peribacillus simplex BA2H3 [AXBR]
41273
41197
-
Arg
ACG
[ENA]
¡û
>W1710026878
AXBR01000014
Bacillota
Peribacillus simplex BA2H3 [AXBR]
2777
2853
+
Arg
ACG
[ENA]
¡û
>W1710522891
FNHN01000020
Bacillota
Bacillus sp. OK048 [FNHN]
51485
51561
+
Arg
ACG
[ENA]
¡û
>W1710597017
FTMX01000006
Bacillota
Peribacillus simplex [FTMX]
648
724
+
Arg
ACG
[ENA]
¡û
>W1710597052
FTMX01000019
Bacillota
Peribacillus simplex [FTMX]
33683
33759
+
Arg
ACG
[ENA]
¡û
>W1710597062
FTMX01000032
Bacillota
Peribacillus simplex [FTMX]
408
332
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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