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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146998 (6 seq.)
>W1710890676
LNBX01000048
Bacteroidota
Bacteroidetes bacterium OLB10 [LNBX]
52839
52915
+
Ala
TGC
[ENA]
¡û
>W1711502868
MKTC01000016
Bacteroidota
Bacteroidetes bacterium 37-13 [MKTC]
283461
283387
-
Ala
TGC
[ENA]
¡û
>WENV181856948
OGWN01030290
[OGWN] freshwater metagenome; freshwater
460
534
+
Ala
TGC
[ENA]
¢þ
>WENV170404998
CEUG01052541
[CEUG] marine metagenome genome assembly TARA_128_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
445
369
-
Ala
TGC
[ENA]
¢þ
>WENV170649939
JRYD01000848
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
267
343
+
Ala
TGC
[ENA]
¢þ
>W1610751113
LNBX01000048
Bacteroidota
Bacteroidetes bacterium OLB10 [LNBX]
52839
52915
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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