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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147014 (92 seq.)
>W1710860773
LMDD01000006
Alphaproteobacteria
Caulobacter sp. Root342 [LMDD]
476132
476056
-
His
GTG
[ENA]
¡û
>W1710860866
LMDF01000006
Alphaproteobacteria
Caulobacter sp. Root343 [LMDF]
656727
656803
+
His
GTG
[ENA]
¡û
>W1710864470
LMFX01000005
Alphaproteobacteria
Caulobacter sp. Root1472 [LMFX]
11269
11345
+
His
GTG
[ENA]
¡û
>W1710866000
LMHD01000004
Alphaproteobacteria
Caulobacter sp. Root656 [LMHD]
94373
94297
-
His
GTG
[ENA]
¡û
>W1710866396
LMHK01000005
Alphaproteobacteria
Devosia sp. Root685 [LMHK]
192141
192217
+
His
GTG
[ENA]
¡û
>W1710866796
LMHT01000032
Alphaproteobacteria
Phenylobacterium sp. Root700 [LMHT]
30601
30677
+
His
GTG
[ENA]
¡û
>W1710871878
LMLO01000006
Alphaproteobacteria
Devosia sp. Leaf64 [LMLO]
211811
211887
+
His
GTG
[ENA]
¡û
>W1710878250
LMQU01000009
Alphaproteobacteria
Devosia sp. Leaf420 [LMQU]
213345
213421
+
His
GTG
[ENA]
¡û
>W1710899424
LNIY01000078
Alphaproteobacteria
Caulobacter vibrioides [LNIY]
60774
60698
-
His
GTG
[ENA]
¡û
>W1711073888
LSJA01000182
Alphaproteobacteria
Caulobacter sp. CCH9-E1 [LSJA]
4909
4833
-
His
GTG
[ENA]
¡û
>W1711074016
LSJD01000078
Alphaproteobacteria
Caulobacter sp. CCH5-E12 [LSJD]
8892
8968
+
His
GTG
[ENA]
¡û
>W131111804
APMP01000006
Alphaproteobacteria
Caulobacter vibrioides OR37 [APMP]
91233
91157
-
His
GTG
[ENA]
¡û
>W131160817
AQWZ01000294
Alphaproteobacteria
Caulobacter sp. JGI 0001010-J14 [AQWZ]
3212
3136
-
His
GTG
[ENA]
¡û
>C005366
AE005673
Alphaproteobacteria
Caulobacter vibrioides CB15 [AE005673]
2537440
2537364
-
His
GTG
[Ensembl]
¡û
>WENV180016434
FSUX01001543
[FSUX] metagenome; soil
6848
6772
-
His
GTG
[ENA]
¢þ
>WENV180017144
FSWM01000925
[FSWM] metagenome; soil
27281
27205
-
His
GTG
[ENA]
¢þ
>WENV180017338
FSWT01000626
[FSWT] metagenome; soil
1202
1126
-
His
GTG
[ENA]
¢þ
>WENV180018756
FTAI01000897
[FTAI] metagenome; soil
1635
1711
+
His
GTG
[ENA]
¢þ
>WENV180024225
FTIF01328910
[FTIF] metagenome; soil
1527
1603
+
His
GTG
[ENA]
¢þ
>WENV180026070
FTIR01022217
[FTIR] metagenome; soil
2914
2838
-
His
GTG
[ENA]
¢þ
>WENV180026167
FTIR01217582
[FTIR] metagenome; soil
1454
1378
-
His
GTG
[ENA]
¢þ
>WENV180026396
FTIT01043455
[FTIT] metagenome; soil
1516
1592
+
His
GTG
[ENA]
¢þ
>WENV180030048
FTJL01092713
[FTJL] metagenome; soil
171
95
-
His
GTG
[ENA]
¢þ
>WENV180030452
FTJM01039990
[FTJM] metagenome; soil
94
170
+
His
GTG
[ENA]
¢þ
>WENV180030803
FTJN01075071
[FTJN] metagenome; soil
580
504
-
His
GTG
[ENA]
¢þ
>WENV180033911
FTKM01000022
[FTKM] metagenome; soil
262918
262994
+
His
GTG
[ENA]
¢þ
>WENV180035237
FTKT01020083
[FTKT] metagenome; soil
424
348
-
His
GTG
[ENA]
¢þ
>WENV180035258
FTKT01044831
[FTKT] metagenome; soil
81
5
-
His
GTG
[ENA]
¢þ
>WENV181222984
OFDC01000946
[OFDC] hot springs metagenome; Water
6783
6859
+
His
GTG
[ENA]
¢þ
>WENV181228007
OFDN01104644
[OFDN] hot springs metagenome; Water
140
64
-
His
GTG
[ENA]
¢þ
>WENV183726899
PJTO01000451
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
6055
5979
-
His
GTG
[ENA]
¢þ
>WENV183728300
PJTQ01000011
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
414613
414689
+
His
GTG
[ENA]
¢þ
>WENV183729787
PJTR01000076
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
101560
101484
-
His
GTG
[ENA]
¢þ
>WENV183731677
PJTT01000097
[PJTT] soil metagenome; Soil (2) enriched on wood chips
122108
122032
-
His
GTG
[ENA]
¢þ
>WENV183731699
PJTT01000110
[PJTT] soil metagenome; Soil (2) enriched on wood chips
101560
101484
-
His
GTG
[ENA]
¢þ
>WENV183743365
PJUJ01000693
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
11472
11396
-
His
GTG
[ENA]
¢þ
>WENV183743418
PJUJ01001047
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
6471
6395
-
His
GTG
[ENA]
¢þ
>WENV183744061
PJUK01000264
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
12536
12612
+
His
GTG
[ENA]
¢þ
>WENV183744283
PJUK01004603
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
34
110
+
His
GTG
[ENA]
¢þ
>WENV183744998
PJUL01001205
[PJUL] feces metagenome; Chicken feces enriched on filter paper
11472
11396
-
His
GTG
[ENA]
¢þ
>WENV183745059
PJUL01001790
[PJUL] feces metagenome; Chicken feces enriched on filter paper
6471
6395
-
His
GTG
[ENA]
¢þ
>WENV183745130
PJUL01002822
[PJUL] feces metagenome; Chicken feces enriched on filter paper
231
155
-
His
GTG
[ENA]
¢þ
>C181078853
CP023313
Alphaproteobacteria
Caulobacter vibrioides CB2 [CP023313]
2667756
2667680
-
His
GTG
-
¡û
>C181078904
CP023314
Alphaproteobacteria
Caulobacter vibrioides CB1 [CP023314]
2657234
2657158
-
His
GTG
-
¡û
>C181078925
CP023315
Alphaproteobacteria
Caulobacter vibrioides CB13b1a [CP023315]
1252454
1252530
+
His
GTG
-
¡û
>C181160485
CP027850
Alphaproteobacteria
Caulobacter segnis TK0059 [CP027850]
3406410
3406334
-
His
GTG
-
¡û
>C191040429
CP026100
Alphaproteobacteria
Caulobacter flavus RHGG3 [CP026100]
5447681
5447605
-
His
GTG
-
¡û
>C191114299
CP033875
Alphaproteobacteria
Caulobacter sp. FWC26 [CP033875]
3175199
3175123
-
His
GTG
-
¡û
>C191119788
CP034122
Alphaproteobacteria
Caulobacter vibrioides CB2A [CP034122]
2559414
2559338
-
His
GTG
-
¡û
>C191130648
CP034767
Alphaproteobacteria
Devosia sp. 1566 [CP034767]
1406334
1406410
+
His
GTG
-
¡û
>W141739299
JNNO01000013
Alphaproteobacteria
Devosia sp. LC5 [JNNO]
17786
17710
-
His
GTG
[ENA]
¡û
>W141779469
JONW01000001
Alphaproteobacteria
Caulobacter sp. UNC358MFTsu5.1 [JONW]
132167
132243
+
His
GTG
[ENA]
¡û
>W141815950
JQJN01000001
Alphaproteobacteria
Caulobacter henricii [JQJN]
555335
555259
-
His
GTG
[ENA]
¡û
>W141816051
JQJP01000004
Alphaproteobacteria
Caulobacter henricii [JQJP]
195563
195487
-
His
GTG
[ENA]
¡û
>C09103150
CP001340
Alphaproteobacteria
Caulobacter vibrioides NA1000 [CP001340]
2563421
2563345
-
His
GTG
[Ensembl]
¡û
>W1810069354
PEBG01000001
Alphaproteobacteria
Caulobacter sp. FWC26 [PEBG]
2250271
2250347
+
His
GTG
[ENA]
¡û
>W1810073468
PEGF01000001
Alphaproteobacteria
Caulobacter sp. X [PEGF]
1132566
1132490
-
His
GTG
[ENA]
¡û
>W1810073578
PEGH01000019
Alphaproteobacteria
Caulobacter sp. BP25 [PEGH]
245374
245298
-
His
GTG
[ENA]
¡û
>W1810177589
PJRQ01000024
Alphaproteobacteria
Caulobacter flavus CGMCC1 15093 [PJRQ]
149422
149346
-
His
GTG
[ENA]
¡û
>W1810177637
PJRR01000009
Alphaproteobacteria
Caulobacter vibrioides DSM 9893 [PJRR]
155207
155131
-
His
GTG
[ENA]
¡û
>W1810177703
PJRS01000040
Alphaproteobacteria
Caulobacter zeae 410 [PJRS]
31324
31400
+
His
GTG
[ENA]
¡û
>W1810426059
PYVW01000016
Alphaproteobacteria
Devosia naphthalenivorans CM5-1 [PYVW]
33884
33808
-
His
GTG
[ENA]
¡û
>W1810543657
QDKO01000024
Alphaproteobacteria
Caulobacter radicis 695 [QDKO]
84655
84731
+
His
GTG
[ENA]
¡û
>W1810543705
QDKP01000042
Alphaproteobacteria
Caulobacter radicis 736 [QDKP]
31534
31610
+
His
GTG
[ENA]
¡û
>W1810543747
QDKQ01000055
Alphaproteobacteria
Caulobacter endophyticus 774 [QDKQ]
117814
117738
-
His
GTG
[ENA]
¡û
>W1810625722
QHJY01000579
Alphaproteobacteria
Caulobacter sp. D5 [QHJY]
644
720
+
His
GTG
[ENA]
¡û
>W1810625746
QHJZ01000255
Alphaproteobacteria
Caulobacter sp. D4A [QHJZ]
919
843
-
His
GTG
[ENA]
¡û
>W10109901
ADBN01000012
Alphaproteobacteria
Caulobacter segnis ATCC 21756 [ADBN]
22251
22327
+
His
GTG
[ENA]
¡û
>W1510639852
CVJQ01000002
Alphaproteobacteria
Phenylobacterium immobile [ATCC 35973] [CVJQ]
69376
69452
+
His
GTG
[ENA]
¡û
>W11112338
ADBN01000012
Alphaproteobacteria
Caulobacter segnis ATCC 21756 [ADBN]
22251
22327
+
His
GTG
[ENA]
¡û
>W1511432258
JUGJ01000011
Alphaproteobacteria
Caulobacter sp. OV484 [JUGJ]
148163
148087
-
His
GTG
[ENA]
¡û
>W1511568576
LAJE01000072
Alphaproteobacteria
Devosia insulae DS-56 [LAJE]
77993
77917
-
His
GTG
[ENA]
¡û
>W1511568600
LAJF01000042
Alphaproteobacteria
Devosia limi DSM 17137 [LAJF]
53784
53860
+
His
GTG
[ENA]
¡û
>W1511573975
LANJ01000046
Alphaproteobacteria
Devosia epidermidihirudinis E84 [LANJ]
159452
159528
+
His
GTG
[ENA]
¡û
>W1511576795
LAPV01000093
Alphaproteobacteria
Devosia psychrophila Cr7-05 [LAPV]
93109
93033
-
His
GTG
[ENA]
¡û
>C121001858
CP002008
Alphaproteobacteria
Caulobacter segnis ATCC 21756 [CP002008]
3406563
3406487
-
His
GTG
[Ensembl]
¡û
>W1610723119
LMDD01000006
Alphaproteobacteria
Caulobacter sp. Root342 [LMDD]
476132
476056
-
His
GTG
[ENA]
¡û
>W1610723212
LMDF01000006
Alphaproteobacteria
Caulobacter sp. Root343 [LMDF]
656727
656803
+
His
GTG
[ENA]
¡û
>W1610726816
LMFX01000005
Alphaproteobacteria
Caulobacter sp. Root1472 [LMFX]
11269
11345
+
His
GTG
[ENA]
¡û
>W1610728346
LMHD01000004
Alphaproteobacteria
Caulobacter sp. Root656 [LMHD]
94373
94297
-
His
GTG
[ENA]
¡û
>W1610728742
LMHK01000005
Alphaproteobacteria
Devosia sp. Root685 [LMHK]
192141
192217
+
His
GTG
[ENA]
¡û
>W1610729142
LMHT01000032
Alphaproteobacteria
Phenylobacterium sp. Root700 [LMHT]
30601
30677
+
His
GTG
[ENA]
¡û
>W1610734224
LMLO01000006
Alphaproteobacteria
Devosia sp. Leaf64 [LMLO]
211811
211887
+
His
GTG
[ENA]
¡û
>W1610740596
LMQU01000009
Alphaproteobacteria
Devosia sp. Leaf420 [LMQU]
213345
213421
+
His
GTG
[ENA]
¡û
>W1610759827
LNIY01000078
Alphaproteobacteria
Caulobacter vibrioides [LNIY]
60774
60698
-
His
GTG
[ENA]
¡û
>W1610912278
LSID01000012
Actinomycetota
Dermacoccus sp. CCH12-B7 [LSID]
634
710
+
His
GTG
[ENA]
¡û
>W1610913193
LSJA01000182
Alphaproteobacteria
Caulobacter sp. CCH9-E1 [LSJA]
4909
4833
-
His
GTG
[ENA]
¡û
>W1610913321
LSJD01000078
Alphaproteobacteria
Caulobacter sp. CCH5-E12 [LSJD]
8892
8968
+
His
GTG
[ENA]
¡û
>W1710550622
FOFL01000001
Alphaproteobacteria
Devosia sp. YR412 [FOFL]
1286104
1286028
-
His
GTG
[ENA]
¡û
>W1710558656
FOMB01000003
Alphaproteobacteria
Devosia psychrophila [FOMB]
231140
231216
+
His
GTG
[ENA]
¡û
>W1710565849
FORN01000026
Alphaproteobacteria
Caulobacter sp. UNC279MFTsu5.1 [FORN]
3630
3554
-
His
GTG
[ENA]
¡û
>W1710583829
FQVC01000022
Alphaproteobacteria
Devosia limi DSM 17137 [FQVC]
877
953
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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