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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147018 (38 seq.)
>W1710907004
LNOL01000037
Betaproteobacteria
Alcaligenes faecalis [LNOL]
262309
262385
+
Arg
TCT
[ENA]
¡û
>W1710995945
LQAS01000010
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
419565
419641
+
Arg
TCT
[ENA]
¡û
>W1711710511
MSZN01000015
Betaproteobacteria
Alcaligenes faecalis [MSZN]
67692
67768
+
Arg
TCT
[ENA]
¡û
>W1711710551
MSZO01000005
Betaproteobacteria
Alcaligenes faecalis [MSZO]
214387
214311
-
Arg
TCT
[ENA]
¡û
>W1711710604
MSZP01000005
Betaproteobacteria
Alcaligenes faecalis [MSZP]
68093
68169
+
Arg
TCT
[ENA]
¡û
>W1711710634
MSZQ01000002
Betaproteobacteria
Alcaligenes faecalis [MSZQ]
68088
68164
+
Arg
TCT
[ENA]
¡û
>W1711710695
MSZR01000003
Betaproteobacteria
Alcaligenes faecalis [MSZR]
231905
231829
-
Arg
TCT
[ENA]
¡û
>W1711711901
MTBI01000002
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [MTBI]
275032
274956
-
Arg
TCT
[ENA]
¡û
>C171115498
CP021079
Betaproteobacteria
Alcaligenes faecalis P156 [CP021079]
1012485
1012561
+
Arg
TCT
-
¡û
>W131051767
AMXV01000016
Betaproteobacteria
Alcaligenes sp. HPC1271 [AMXV]
209129
209053
-
Arg
TCT
[ENA]
¡û
>W131223041
AUBT01000002
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus DSM 16503 [AUBT]
257455
257531
+
Arg
TCT
[ENA]
¡û
>W141104440
AVOG02000067
Betaproteobacteria
Alcaligenes sp. EGD-AK7 [AVOG]
16822
16898
+
Arg
TCT
[ENA]
¡û
>W141237719
BBJQ01000004
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BBJQ]
110913
110989
+
Arg
TCT
[ENA]
¡û
>WENV170645959
JQGF01002103
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
2867
2943
+
Arg
TCT
[ENA]
¢þ
>WENV170646060
JQGF01020728
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
194
118
-
Arg
TCT
[ENA]
¢þ
>WENV170646061
JQGF01020729
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
194
118
-
Arg
TCT
[ENA]
¢þ
>WENV170655235
JTFN01013681
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
1047
1123
+
Arg
TCT
[ENA]
¢þ
>WENV170655295
JTFN01018721
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
575
651
+
Arg
TCT
[ENA]
¢þ
>WENV170656371
JTFO01011532
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
8537
8613
+
Arg
TCT
[ENA]
¢þ
>WENV170656799
JTFO01045660
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
481
557
+
Arg
TCT
[ENA]
¢þ
>WENV170657243
JTFO01109310
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
110
186
+
Arg
TCT
[ENA]
¢þ
>WENV170657325
JTFO01126213
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
110
186
+
Arg
TCT
[ENA]
¢þ
>C181053216
CP021641
Betaproteobacteria
Alcaligenes faecalis JQ135 [CP021641]
939850
939926
+
Arg
TCT
-
¡û
>C181088575
CP023667
Betaproteobacteria
Alcaligenes faecalis DSM 30030 [CP023667]
719808
719884
+
Arg
TCT
-
¡û
>C191085253
CP032153
Betaproteobacteria
Alcaligenes aquatilis QD168 [CP032153]
1180382
1180458
+
Arg
TCT
-
¡û
>C191091153
CP032521
Betaproteobacteria
Alcaligenes faecalis J481 [CP032521]
3455403
3455479
+
Arg
TCT
-
¡û
>C191113942
CP033861
Betaproteobacteria
Alcaligenes faecalis FDAARGOS_491 [CP033861]
1994485
1994561
+
Arg
TCT
-
¡û
>C191149639
CP036294
Betaproteobacteria
Alcaligenes faecalis AN70 [CP036294]
2782415
2782491
+
Arg
TCT
-
¡û
>W1810583901
QEXO01000002
Betaproteobacteria
Alcaligenes faecalis YBY [QEXO]
267947
267871
-
Arg
TCT
[ENA]
¡û
>W1511321033
JQCV01000004
Betaproteobacteria
Alcaligenes faecalis MOR02 [JQCV]
278255
278179
-
Arg
TCT
[ENA]
¡û
>W1511537472
JZBR01000007
Betaproteobacteria
Alcaligenes faecalis ZD02 [JZBR]
737360
737436
+
Arg
TCT
[ENA]
¡û
>C161051377
CP013119
Betaproteobacteria
Alcaligenes faecalis ZD02 [CP013119]
1331142
1331066
-
Arg
TCT
[Ensembl]
¡û
>W121091211
AKMR01000009
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NCIB 8687 [AKMR]
240083
240007
-
Arg
TCT
[ENA]
¡û
>W1610093540
CYTB01000001
Betaproteobacteria
Alcaligenes faecalis ATCC8750 [CYTB]
514458
514534
+
Arg
TCT
[ENA]
¡û
>W1610766018
LNOL01000037
Betaproteobacteria
Alcaligenes faecalis [LNOL]
262309
262385
+
Arg
TCT
[ENA]
¡û
>W1610850602
LQAS01000010
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
419565
419641
+
Arg
TCT
[ENA]
¡û
>W1610921536
LSUO01000023
Betaproteobacteria
Alcaligenes faecalis P156 [LSUO]
114827
114751
-
Arg
TCT
[ENA]
¡û
>W1710082516
BDHG01000002
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BDHG]
514096
514172
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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