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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147029 (122 seq.)
>W1710865891
LMHA01000002
Gammaproteobacteria
Pseudoxanthomonas sp. Root65 [LMHA]
487944
487868
-
Arg
CCT
[ENA]
¡û
>W1710913780
LNSS01000037
Gammaproteobacteria
Xanthomonas translucens [LNSS]
23107
23031
-
Arg
CCT
[ENA]
¡û
>W1710913802
LNST01000010
Gammaproteobacteria
Xanthomonas translucens [LNST]
20946
21022
+
Arg
CCT
[ENA]
¡û
>W1710913859
LNSU01000034
Gammaproteobacteria
Xanthomonas translucens [LNSU]
21082
21158
+
Arg
CCT
[ENA]
¡û
>W1710914056
LNSZ01000385
Gammaproteobacteria
Xanthomonas translucens [LNSZ]
3743
3667
-
Arg
CCT
[ENA]
¡û
>W1710914091
LNTA01000109
Gammaproteobacteria
Xanthomonas translucens [LNTA]
31405
31481
+
Arg
CCT
[ENA]
¡û
>W1710916522
LNVJ01000046
Gammaproteobacteria
Xanthomonas translucens [LNVJ]
20625
20701
+
Arg
CCT
[ENA]
¡û
>W1710916578
LNVK01000038
Gammaproteobacteria
Xanthomonas translucens [LNVK]
22820
22744
-
Arg
CCT
[ENA]
¡û
>W1710916635
LNVL01000035
Gammaproteobacteria
Xanthomonas translucens [LNVL]
20946
21022
+
Arg
CCT
[ENA]
¡û
>W1710916671
LNVM01000035
Gammaproteobacteria
Xanthomonas translucens [LNVM]
22878
22802
-
Arg
CCT
[ENA]
¡û
>W1710916737
LNVN01000032
Gammaproteobacteria
Xanthomonas translucens [LNVN]
23107
23031
-
Arg
CCT
[ENA]
¡û
>W1710916785
LNVO01000043
Gammaproteobacteria
Xanthomonas translucens [LNVO]
15030
14954
-
Arg
CCT
[ENA]
¡û
>W1710916845
LNVP01000033
Gammaproteobacteria
Xanthomonas translucens [LNVP]
24832
24908
+
Arg
CCT
[ENA]
¡û
>W1710916864
LNVQ01000034
Gammaproteobacteria
Xanthomonas translucens [LNVQ]
19662
19738
+
Arg
CCT
[ENA]
¡û
>W1710916960
LNVR01000036
Gammaproteobacteria
Xanthomonas translucens [LNVR]
20986
21062
+
Arg
CCT
[ENA]
¡û
>W1710917007
LNVS01000036
Gammaproteobacteria
Xanthomonas translucens [LNVS]
22883
22807
-
Arg
CCT
[ENA]
¡û
>W1710917070
LNVT01000032
Gammaproteobacteria
Xanthomonas translucens [LNVT]
23107
23031
-
Arg
CCT
[ENA]
¡û
>W1710917087
LNVU01000017
Gammaproteobacteria
Xanthomonas translucens [LNVU]
22821
22745
-
Arg
CCT
[ENA]
¡û
>W1710917164
LNVV01000034
Gammaproteobacteria
Xanthomonas translucens [LNVV]
22820
22744
-
Arg
CCT
[ENA]
¡û
>W1710917204
LNVW01000012
Gammaproteobacteria
Xanthomonas translucens [LNVW]
21517
21593
+
Arg
CCT
[ENA]
¡û
>W1711073085
LSIF01000055
Gammaproteobacteria
Pseudoxanthomonas mexicana [LSIF]
29597
29521
-
Arg
CCT
[ENA]
¡û
>W1711191617
LWSU01000267
Gammaproteobacteria
Xanthomonas translucens pv. poae [LWSU]
68683
68607
-
Arg
CCT
[ENA]
¡û
>W1711191665
LWSV01000788
Gammaproteobacteria
Xanthomonas translucens pv. translucens [LWSV]
19666
19742
+
Arg
CCT
[ENA]
¡û
>W1711191703
LWSW01000311
Gammaproteobacteria
Xanthomonas translucens pv. graminis [LWSW]
22787
22711
-
Arg
CCT
[ENA]
¡û
>W1711191724
LWSX01000037
Gammaproteobacteria
Xanthomonas translucens pv. arrhenatheri [LWSX]
148797
148721
-
Arg
CCT
[ENA]
¡û
>W1711296871
MADM01000013
Gammaproteobacteria
Xanthomonas translucens pv. cerealis [MADM]
43552
43476
-
Arg
CCT
[ENA]
¡û
>W1711296916
MADN01000010
Gammaproteobacteria
Xanthomonas translucens pv. poae [MADN]
10001
9925
-
Arg
CCT
[ENA]
¡û
>W1711296960
MADO01000001
Gammaproteobacteria
Xanthomonas translucens pv. poae [MADO]
22606
22682
+
Arg
CCT
[ENA]
¡û
>W1711297017
MADP01000014
Gammaproteobacteria
Xanthomonas translucens pv. poae [MADP]
22811
22735
-
Arg
CCT
[ENA]
¡û
>W1711297060
MADQ01000004
Gammaproteobacteria
Xanthomonas translucens pv. translucens [MADQ]
19685
19761
+
Arg
CCT
[ENA]
¡û
>W1711297126
MADR01000165
Gammaproteobacteria
Xanthomonas translucens pv. translucens [MADR]
4140
4064
-
Arg
CCT
[ENA]
¡û
>W1711297153
MADS01000006
Gammaproteobacteria
Xanthomonas translucens pv. translucens [MADS]
43995
43919
-
Arg
CCT
[ENA]
¡û
>W1711297208
MADT01000018
Gammaproteobacteria
Xanthomonas translucens pv. undulosa [MADT]
30713
30789
+
Arg
CCT
[ENA]
¡û
>W1711297244
MADU01000003
Gammaproteobacteria
Xanthomonas translucens pv. undulosa [MADU]
44461
44385
-
Arg
CCT
[ENA]
¡û
>W1711297318
MADV01000620
Gammaproteobacteria
Xanthomonas translucens pv. undulosa [MADV]
825
749
-
Arg
CCT
[ENA]
¡û
>C171128959
LT604072
Gammaproteobacteria
Xanthomonas translucens pv. translucens DSM 18974 [LT604072]
2797555
2797479
-
Arg
CCT
-
¡û
>W131051870
AMXY01000146
Gammaproteobacteria
Xanthomonas translucens DAR61454 [AMXY]
20530
20606
+
Arg
CCT
[ENA]
¡û
>W131155234
AQOI01000558
Gammaproteobacteria
Xanthomonas sp. SHU 199 SHU199 [AQOI]
2907
2831
-
Arg
CCT
[ENA]
¡û
>W131155274
AQOJ01000594
Gammaproteobacteria
Xanthomonas sp. SHU 166 SHU166 [AQOJ]
17734
17810
+
Arg
CCT
[ENA]
¡û
>W131155322
AQOK01000640
Gammaproteobacteria
Xanthomonas sp. SHU 308 SHU308 [AQOK]
6722
6798
+
Arg
CCT
[ENA]
¡û
>W131243930
CAPJ01000098
Gammaproteobacteria
Xanthomonas translucens pv. translucens DSM 18974 [CAPJ]
3669
3593
-
Arg
CCT
[ENA]
¡û
>W141051448
ANGG01000575
Gammaproteobacteria
Xanthomonas translucens pv. graminis ART-Xtg29 [ANGG]
3743
3667
-
Arg
CCT
[ENA]
¡û
>WENV181191413
OEPS010078727
[OEPS] soil metagenome; soil
479
403
-
Arg
CCT
[ENA]
¢þ
>WENV183731740
PJTT01000132
[PJTT] soil metagenome; Soil (2) enriched on wood chips
119975
120051
+
Arg
CCT
[ENA]
¢þ
>WENV183742285
PJUH01006154
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
249
173
-
Arg
CCT
[ENA]
¢þ
>WENV183747909
PPFU01002739
[PPFU] hypolithon metagenome; Antarctic Hypolithon
3178
3254
+
Arg
CCT
[ENA]
¢þ
>WENV170574305
FLYM01024714
[FLYM] hot springs metagenome; Sediment
158
234
+
Arg
CCT
[ENA]
¢þ
>C181007921
CP009750
Gammaproteobacteria
Xanthomonas translucens pv. undulosa ICMP11055 [CP009750]
3034411
3034335
-
Arg
CCT
-
¡û
>C181080844
CP023406
Gammaproteobacteria
Luteimonas chenhongjianii 100111 [CP023406]
1862461
1862385
-
Arg
CCT
-
¡û
>C191183281
CP040871
Gammaproteobacteria
Thermomonas aquatica SY21 [CP040871]
636035
636111
+
Arg
CCT
-
¡û
>W1910208118
FLTU01000127
Gammaproteobacteria
Xanthomonas translucens pv. graminis [FLTU]
20841
20917
+
Arg
CCT
[ENA]
¡û
>W1910208169
FLTV01000127
Gammaproteobacteria
Xanthomonas translucens pv. graminis [FLTV]
20841
20917
+
Arg
CCT
[ENA]
¡û
>W1910208217
FLTW01000135
Gammaproteobacteria
Xanthomonas translucens pv. graminis ART-Xtg29 [FLTW]
71432
71508
+
Arg
CCT
[ENA]
¡û
>W1910208269
FLTY01000135
Gammaproteobacteria
Xanthomonas translucens pv. graminis [FLTY]
20841
20917
+
Arg
CCT
[ENA]
¡û
>W1910208319
FLTZ01000125
Gammaproteobacteria
Xanthomonas translucens pv. graminis [FLTZ]
40761
40837
+
Arg
CCT
[ENA]
¡û
>W1910208601
FLUK01000131
Gammaproteobacteria
Xanthomonas translucens pv. graminis [FLUK]
20841
20917
+
Arg
CCT
[ENA]
¡û
>W1910692331
MDCB01000001
Gammaproteobacteria
Xanthomonas albilineans CFBP2523 [MDCB]
45662
45738
+
Arg
CCT
[ENA]
¡û
>W1910693106
MDEG01000004
Gammaproteobacteria
Xanthomonas hyacinthi CFBP1156 [MDEG]
242254
242178
-
Arg
CCT
[ENA]
¡û
>W1910693324
MDEK01000014
Gammaproteobacteria
Xanthomonas sacchari CFBP4641 [MDEK]
126363
126287
-
Arg
CCT
[ENA]
¡û
>W1911162550
NPZB01000002
Gammaproteobacteria
Lysobacter silvestris AM20-91 [NPZB]
712046
711970
-
Arg
CCT
[ENA]
¡û
>W1911218362
NRQR01000025
Gammaproteobacteria
Luteimonas sp. 4-12 [NRQR]
216014
215938
-
Arg
CCT
[ENA]
¡û
>W1911283687
NTJF01000006
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0831 [NTJF]
217144
217220
+
Arg
CCT
[ENA]
¡û
>W1911283752
NTJG01000022
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0793 [NTJG]
4198
4274
+
Arg
CCT
[ENA]
¡û
>W1911283797
NTJH01000023
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0792 [NTJH]
4191
4267
+
Arg
CCT
[ENA]
¡û
>C151036069
CP008714
Gammaproteobacteria
Xanthomonas translucens pv. undulosa Xtu 4699 [CP008714]
1768012
1768088
+
Arg
CCT
[Ensembl]
¡û
>C151068210
CP010409
Gammaproteobacteria
Xanthomonas sacchari R1 [CP010409]
306899
306975
+
Arg
CCT
[Ensembl]
¡û
>C151077939
CP011144
Gammaproteobacteria
Pseudoxanthomonas suwonensis J1 [CP011144]
279426
279350
-
Arg
CCT
[Ensembl]
¡û
>C10114099
FP565176
Gammaproteobacteria
Xanthomonas albilineans GPE PC73 [FP565176]
1441035
1441111
+
Arg
CCT
[Ensembl]
¡û
>W1510719893
CXOI01000005
Gammaproteobacteria
Xanthomonas translucens pv. arrhenatheri LMG 727 [CXOI]
31010
31086
+
Arg
CCT
[ENA]
¡û
>W1510720033
CXOK01000099
Gammaproteobacteria
Xanthomonas translucens pv. poae [CXOK]
11589
11513
-
Arg
CCT
[ENA]
¡û
>W1511305245
JPLD01000134
Gammaproteobacteria
Xanthomonas hyacinthi DSM 19077 [JPLD]
4812
4736
-
Arg
CCT
[ENA]
¡û
>W1511478376
JWHD01000014
Gammaproteobacteria
Xanthomonas translucens pv. cerealis CFBP 2541 [JWHD]
57834
57758
-
Arg
CCT
[ENA]
¡û
>W1511508462
JXQE01000055
Gammaproteobacteria
Xanthomonas sacchari LMG 476 [JXQE]
1987085
1987009
-
Arg
CCT
[ENA]
¡û
>W1511542328
JZHX01000001
Gammaproteobacteria
Xanthomonas albilineans FIJ080 [JZHX]
1404561
1404637
+
Arg
CCT
[ENA]
¡û
>W1511542378
JZHY01000003
Gammaproteobacteria
Xanthomonas albilineans GAB266 [JZHY]
1411992
1412068
+
Arg
CCT
[ENA]
¡û
>W1511542428
JZHZ01000007
Gammaproteobacteria
Xanthomonas sp. GPE 39 [JZHZ]
1350251
1350327
+
Arg
CCT
[ENA]
¡û
>W1511542477
JZIA01000003
Gammaproteobacteria
Xanthomonas albilineans GPE PC17 [JZIA]
1399212
1399288
+
Arg
CCT
[ENA]
¡û
>W1511542527
JZIB01000003
Gammaproteobacteria
Xanthomonas albilineans GPE PC86 [JZIB]
1433618
1433694
+
Arg
CCT
[ENA]
¡û
>W1511542577
JZIC01000001
Gammaproteobacteria
Xanthomonas albilineans HVO082 [JZIC]
1428232
1428308
+
Arg
CCT
[ENA]
¡û
>W1511542627
JZID01000001
Gammaproteobacteria
Xanthomonas albilineans HVO005 [JZID]
1384189
1384265
+
Arg
CCT
[ENA]
¡û
>W1511542676
JZIE01000001
Gammaproteobacteria
Xanthomonas albilineans LKA070 [JZIE]
1374230
1374306
+
Arg
CCT
[ENA]
¡û
>W1511542725
JZIF01000003
Gammaproteobacteria
Xanthomonas albilineans MTQ032 [JZIF]
1402882
1402958
+
Arg
CCT
[ENA]
¡û
>W1511542774
JZIG01000004
Gammaproteobacteria
Xanthomonas albilineans PNG130 [JZIG]
1406333
1406409
+
Arg
CCT
[ENA]
¡û
>W1511542823
JZIH01000029
Gammaproteobacteria
Xanthomonas albilineans REU174 [JZIH]
1486588
1486664
+
Arg
CCT
[ENA]
¡û
>W1511542870
JZII01000001
Gammaproteobacteria
Xanthomonas albilineans REU209 [JZII]
1238585
1238661
+
Arg
CCT
[ENA]
¡û
>W1511542922
JZIJ01000005
Gammaproteobacteria
Xanthomonas albilineans USA048 [JZIJ]
1335813
1335889
+
Arg
CCT
[ENA]
¡û
>W1511542972
JZIK01000001
Gammaproteobacteria
Xanthomonas albilineans Xa23R1 [JZIK]
1329236
1329312
+
Arg
CCT
[ENA]
¡û
>W1511543022
JZIL01000006
Gammaproteobacteria
Xanthomonas albilineans XaFL07-1 [JZIL]
1399009
1399085
+
Arg
CCT
[ENA]
¡û
>W1511543086
JZIM01000024
Gammaproteobacteria
Xanthomonas sp. MUS 060 [JZIM]
5041
4965
-
Arg
CCT
[ENA]
¡û
>W1511684056
LFME01000001
Gammaproteobacteria
Xanthomonas sp. NCPPB 1128 pv. phaseoli NCPPB1128 [LFME]
344501
344425
-
Arg
CCT
[ENA]
¡û
>W11178105
AGDB01000003
Gammaproteobacteria
Xanthomonas sacchari NCPPB 4393 [AGDB]
4890
4966
+
Arg
CCT
[ENA]
¡û
>W11180556
AGHZ01000735
Gammaproteobacteria
Xanthomonas sp. NCPPB 1132 NCPPB1132 [AGHZ]
567
643
+
Arg
CCT
[ENA]
¡û
>W1610542025
JTEM01000438
Gammaproteobacteria
Xanthomonas translucens pv. translucens [JTEM]
743
667
-
Arg
CCT
[ENA]
¡û
>W1610586892
LDJI01000019
Gammaproteobacteria
Stenotrophomonas humi [LDJI]
60289
60213
-
Arg
CCT
[ENA]
¡û
>W1610728237
LMHA01000002
Gammaproteobacteria
Pseudoxanthomonas sp. Root65 [LMHA]
487944
487868
-
Arg
CCT
[ENA]
¡û
>W1610772139
LNSS01000037
Gammaproteobacteria
Xanthomonas translucens [LNSS]
23107
23031
-
Arg
CCT
[ENA]
¡û
>W1610772161
LNST01000010
Gammaproteobacteria
Xanthomonas translucens [LNST]
20946
21022
+
Arg
CCT
[ENA]
¡û
>W1610772218
LNSU01000034
Gammaproteobacteria
Xanthomonas translucens [LNSU]
21082
21158
+
Arg
CCT
[ENA]
¡û
>W1610772415
LNSZ01000385
Gammaproteobacteria
Xanthomonas translucens [LNSZ]
3743
3667
-
Arg
CCT
[ENA]
¡û
>W1610772450
LNTA01000109
Gammaproteobacteria
Xanthomonas translucens [LNTA]
31405
31481
+
Arg
CCT
[ENA]
¡û
>W1610774558
LNVJ01000046
Gammaproteobacteria
Xanthomonas translucens [LNVJ]
20625
20701
+
Arg
CCT
[ENA]
¡û
>W1610774614
LNVK01000038
Gammaproteobacteria
Xanthomonas translucens [LNVK]
22820
22744
-
Arg
CCT
[ENA]
¡û
>W1610774671
LNVL01000035
Gammaproteobacteria
Xanthomonas translucens [LNVL]
20946
21022
+
Arg
CCT
[ENA]
¡û
>W1610774707
LNVM01000035
Gammaproteobacteria
Xanthomonas translucens [LNVM]
22878
22802
-
Arg
CCT
[ENA]
¡û
>W1610774773
LNVN01000032
Gammaproteobacteria
Xanthomonas translucens [LNVN]
23107
23031
-
Arg
CCT
[ENA]
¡û
>W1610774821
LNVO01000043
Gammaproteobacteria
Xanthomonas translucens [LNVO]
15030
14954
-
Arg
CCT
[ENA]
¡û
>W1610774881
LNVP01000033
Gammaproteobacteria
Xanthomonas translucens [LNVP]
24832
24908
+
Arg
CCT
[ENA]
¡û
>W1610774900
LNVQ01000034
Gammaproteobacteria
Xanthomonas translucens [LNVQ]
19662
19738
+
Arg
CCT
[ENA]
¡û
>W1610774996
LNVR01000036
Gammaproteobacteria
Xanthomonas translucens [LNVR]
20986
21062
+
Arg
CCT
[ENA]
¡û
>W1610775043
LNVS01000036
Gammaproteobacteria
Xanthomonas translucens [LNVS]
22883
22807
-
Arg
CCT
[ENA]
¡û
>W1610775106
LNVT01000032
Gammaproteobacteria
Xanthomonas translucens [LNVT]
23107
23031
-
Arg
CCT
[ENA]
¡û
>W1610775123
LNVU01000017
Gammaproteobacteria
Xanthomonas translucens [LNVU]
22821
22745
-
Arg
CCT
[ENA]
¡û
>W1610775200
LNVV01000034
Gammaproteobacteria
Xanthomonas translucens [LNVV]
22820
22744
-
Arg
CCT
[ENA]
¡û
>W1610775240
LNVW01000012
Gammaproteobacteria
Xanthomonas translucens [LNVW]
21517
21593
+
Arg
CCT
[ENA]
¡û
>W1610912390
LSIF01000055
Gammaproteobacteria
Pseudoxanthomonas mexicana [LSIF]
29597
29521
-
Arg
CCT
[ENA]
¡û
>W1610993028
LWSU01000267
Gammaproteobacteria
Xanthomonas translucens pv. poae [LWSU]
68683
68607
-
Arg
CCT
[ENA]
¡û
>W1610993076
LWSV01000788
Gammaproteobacteria
Xanthomonas translucens pv. translucens [LWSV]
19666
19742
+
Arg
CCT
[ENA]
¡û
>W1610993114
LWSW01000311
Gammaproteobacteria
Xanthomonas translucens pv. graminis [LWSW]
22787
22711
-
Arg
CCT
[ENA]
¡û
>W1610993135
LWSX01000037
Gammaproteobacteria
Xanthomonas translucens pv. arrhenatheri [LWSX]
148797
148721
-
Arg
CCT
[ENA]
¡û
>W1710527581
FNLD01000001
Gammaproteobacteria
Pseudoxanthomonas sp. CF125 [FNLD]
198631
198707
+
Arg
CCT
[ENA]
¡û
>W1710645156
JTEM01000438
Gammaproteobacteria
Xanthomonas translucens pv. translucens [JTEM]
743
667
-
Arg
CCT
[ENA]
¡û
>W1710706022
LDJI01000019
Gammaproteobacteria
Stenotrophomonas humi [LDJI]
60289
60213
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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