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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147036 (69 seq.)
>W1710924143
LOCS01000015
Gammaproteobacteria
Escherichia coli [LOCS]
873
797
-
Arg
TCT
[ENA]
¡û
>W1710928003
LOFQ01000018
Gammaproteobacteria
Escherichia coli [LOFQ]
392230
392154
-
Arg
TCT
[ENA]
¡û
>W1710928253
LOFT01000040
Gammaproteobacteria
Escherichia coli [LOFT]
63247
63323
+
Arg
TCT
[ENA]
¡û
>W1710928676
LOFY01000067
Gammaproteobacteria
Escherichia coli [LOFY]
63247
63323
+
Arg
TCT
[ENA]
¡û
>W1710930800
LOGZ01000105
Gammaproteobacteria
Escherichia coli [LOGZ]
19813
19889
+
Arg
TCT
[ENA]
¡û
>W1710932383
LOIF01000037
Gammaproteobacteria
Escherichia coli [LOIF]
69818
69742
-
Arg
TCT
[ENA]
¡û
>W1711160532
LVQZ01000144
Gammaproteobacteria
Escherichia coli [LVQZ]
7497
7421
-
Arg
TCT
[ENA]
¡û
>W1711231187
LYAN01000331
Gammaproteobacteria
Escherichia coli [LYAN]
1069
1145
+
Arg
TCT
[ENA]
¡û
>W1712011646
NEMJ01000020
Gammaproteobacteria
Escherichia coli [NEMJ]
30671
30595
-
Arg
TCT
[ENA]
¡û
>W1712011934
NEMM01000070
Gammaproteobacteria
Escherichia coli [NEMM]
1500
1576
+
Arg
TCT
[ENA]
¡û
>W1712014019
NENM01000001
Gammaproteobacteria
Escherichia coli [NENM]
3286
3362
+
Arg
TCT
[ENA]
¡û
>W1712015220
NEOA01000007
Gammaproteobacteria
Escherichia coli [NEOA]
2476
2552
+
Arg
TCT
[ENA]
¡û
>W1712016067
NEOK01000023
Gammaproteobacteria
Escherichia coli [NEOK]
30656
30580
-
Arg
TCT
[ENA]
¡û
>W141129602
AWBP01000017
Gammaproteobacteria
Escherichia coli UMEA 3152-1 [AWBP]
5842
5918
+
Arg
TCT
[ENA]
¡û
>WENV181681617
OGOU01000174
[OGOU] human gut metagenome; faeces
954
1030
+
Arg
TCT
[ENA]
¢þ
>WENV183062734
OLIE01004791
[OLIE] metagenome; faeces
313
389
+
Arg
TCT
[ENA]
¢þ
>C181156109
CP027550
Gammaproteobacteria
Escherichia coli 2015C-4136CT1 [CP027550]
3877876
3877952
+
Arg
TCT
-
¡û
>C191165813
CP039404
Gammaproteobacteria
Escherichia coli 377323_2f [CP039404]
448581
448657
+
Arg
TCT
-
¡û
>W1910076412
BFKF01000094
Gammaproteobacteria
Escherichia coli HH-NP029 [BFKF]
50392
50316
-
Arg
TCT
[ENA]
¡û
>W1910082604
BFNL01000013
Gammaproteobacteria
Escherichia coli JML044 [BFNL]
12628
12552
-
Arg
TCT
[ENA]
¡û
>W1910197007
FBUL01000004
Gammaproteobacteria
Escherichia coli M900 [FBUL]
63662
63738
+
Arg
TCT
[ENA]
¡û
>W1910197203
FBUN01000036
Gammaproteobacteria
Escherichia coli ED360 [FBUN]
2262
2186
-
Arg
TCT
[ENA]
¡û
>W1910197289
FBUO01000042
Gammaproteobacteria
Escherichia coli ED363 [FBUO]
1015
939
-
Arg
TCT
[ENA]
¡û
>W1910197388
FBUP01000366
Gammaproteobacteria
Escherichia coli BCW5743 [FBUP]
80676
80600
-
Arg
TCT
[ENA]
¡û
>W1910197423
FBUQ01000004
Gammaproteobacteria
Escherichia coli M856 [FBUQ]
302247
302171
-
Arg
TCT
[ENA]
¡û
>W1910197534
FBUR01000225
Gammaproteobacteria
Escherichia coli BCW5739 [FBUR]
80863
80787
-
Arg
TCT
[ENA]
¡û
>W1910197680
FBUT01000022
Gammaproteobacteria
Escherichia coli ED444 [FBUT]
33092
33016
-
Arg
TCT
[ENA]
¡û
>W1910197771
FBUU01000021
Gammaproteobacteria
Escherichia coli ED430 [FBUU]
30842
30766
-
Arg
TCT
[ENA]
¡û
>W1910197940
FBUW01000021
Gammaproteobacteria
Escherichia coli ED369 [FBUW]
30842
30766
-
Arg
TCT
[ENA]
¡û
>W1910198050
FBUX01000066
Gammaproteobacteria
Escherichia coli ED366 [FBUX]
16024
16100
+
Arg
TCT
[ENA]
¡û
>W1910198104
FBUY01000059
Gammaproteobacteria
Escherichia coli BCW5711 [FBUY]
99
23
-
Arg
TCT
[ENA]
¡û
>W1910198178
FBUZ01000040
Gammaproteobacteria
Escherichia coli ED377 [FBUZ]
1040
964
-
Arg
TCT
[ENA]
¡û
>W1910198268
FBVB01000093
Gammaproteobacteria
Escherichia coli BCW5717 [FBVB]
80387
80311
-
Arg
TCT
[ENA]
¡û
>W1910198392
FBVD01000002
Gammaproteobacteria
Escherichia coli M858 [FBVD]
382227
382151
-
Arg
TCT
[ENA]
¡û
>W1910198529
FBVE01000249
Gammaproteobacteria
Escherichia coli BCW5746 [FBVE]
80862
80786
-
Arg
TCT
[ENA]
¡û
>W1910198609
FBVF01000053
Gammaproteobacteria
Escherichia coli ED361 [FBVF]
17373
17297
-
Arg
TCT
[ENA]
¡û
>W1910532862
FZEX01000038
Gammaproteobacteria
Escherichia coli [FZEX]
27805
27729
-
Arg
TCT
[ENA]
¡û
>W1910960056
NJUK01000020
Gammaproteobacteria
Escherichia coli MOD1-EC1679 [NJUK]
30442
30366
-
Arg
TCT
[ENA]
¡û
>W1910986609
NKOQ01000040
Gammaproteobacteria
Escherichia coli MOD1-EC1678 [NKOQ]
30621
30545
-
Arg
TCT
[ENA]
¡û
>W1910993224
NKVP01000042
Gammaproteobacteria
Escherichia coli MOD1-EC5782 [NKVP]
12360
12436
+
Arg
TCT
[ENA]
¡û
>W1911007559
NLHO01000003
Gammaproteobacteria
Escherichia coli MOD1-EC5697 [NLHO]
407063
407139
+
Arg
TCT
[ENA]
¡û
>W1911020262
NLOH01000010
Gammaproteobacteria
Escherichia coli MOD1-EC5481 [NLOH]
19206
19282
+
Arg
TCT
[ENA]
¡û
>W1911020816
NLOQ01000028
Gammaproteobacteria
Escherichia coli MOD1-EC5471 [NLOQ]
66305
66229
-
Arg
TCT
[ENA]
¡û
>W1911037064
NLXR01000038
Gammaproteobacteria
Escherichia coli MOD1-EC6437 [NLXR]
16495
16419
-
Arg
TCT
[ENA]
¡û
>W1911037137
NLXS01000072
Gammaproteobacteria
Escherichia coli MOD1-EC6430 [NLXS]
941
865
-
Arg
TCT
[ENA]
¡û
>W1911045650
NMCB01000067
Gammaproteobacteria
Escherichia coli MOD1-EC6141 [NMCB]
1712
1636
-
Arg
TCT
[ENA]
¡û
>W1911058261
NMIV01000004
Gammaproteobacteria
Escherichia coli MOD1-EC6352 [NMIV]
18552
18628
+
Arg
TCT
[ENA]
¡û
>W1911058491
NMIY01000010
Gammaproteobacteria
Escherichia coli MOD1-EC6348 [NMIY]
44970
44894
-
Arg
TCT
[ENA]
¡û
>W1911060240
NMJV01000094
Gammaproteobacteria
Escherichia coli MOD1-EC6112 [NMJV]
3578
3502
-
Arg
TCT
[ENA]
¡û
>W1911091902
NNWC01000024
Gammaproteobacteria
Escherichia coli MOD1-EC6436 [NNWC]
2093
2017
-
Arg
TCT
[ENA]
¡û
>W1911091926
NNWD01000001
Gammaproteobacteria
Escherichia coli MOD1-EC6435 [NNWD]
11356
11432
+
Arg
TCT
[ENA]
¡û
>W1911096017
NNYF01000023
Gammaproteobacteria
Escherichia coli MOD1-EC6199 [NNYF]
30621
30545
-
Arg
TCT
[ENA]
¡û
>W1911106715
NOEA01000006
Gammaproteobacteria
Escherichia coli MOD1-EC5383 [NOEA]
195692
195616
-
Arg
TCT
[ENA]
¡û
>W1911133821
NOTP01000026
Gammaproteobacteria
Escherichia coli MOD1-EC6724 [NOTP]
1126
1202
+
Arg
TCT
[ENA]
¡û
>W1911246650
NSKV01000011
Gammaproteobacteria
Escherichia coli 145 [NSKV]
76432
76356
-
Arg
TCT
[ENA]
¡û
>W1911286138
NTNE01000027
Gammaproteobacteria
Escherichia coli MOD1-EC6721 [NTNE]
1176
1252
+
Arg
TCT
[ENA]
¡û
>W1810604573
QGMN01000014
Gammaproteobacteria
Escherichia coli BCW_5717 [QGMN]
93108
93032
-
Arg
TCT
[ENA]
¡û
>W1810720221
QNRB01000003
Gammaproteobacteria
Escherichia coli FP3 [QNRB]
285003
284927
-
Arg
TCT
[ENA]
¡û
>W1510740006
CYGI01000013
Gammaproteobacteria
Escherichia coli 703108 [CYGI]
121411
121487
+
Arg
TCT
[ENA]
¡û
>W11159474
AFDY01000049
Gammaproteobacteria
Escherichia coli STEC_H.1.8 [AFDY]
46105
46181
+
Arg
TCT
[ENA]
¡û
>W1610598066
LFHV01000002
Gammaproteobacteria
Escherichia coli [LFHV]
14109
14185
+
Arg
TCT
[ENA]
¡û
>W1610781789
LOCS01000015
Gammaproteobacteria
Escherichia coli [LOCS]
873
797
-
Arg
TCT
[ENA]
¡û
>W1610785545
LOFQ01000018
Gammaproteobacteria
Escherichia coli [LOFQ]
392230
392154
-
Arg
TCT
[ENA]
¡û
>W1610785795
LOFT01000040
Gammaproteobacteria
Escherichia coli [LOFT]
63247
63323
+
Arg
TCT
[ENA]
¡û
>W1610786218
LOFY01000067
Gammaproteobacteria
Escherichia coli [LOFY]
63247
63323
+
Arg
TCT
[ENA]
¡û
>W1610788342
LOGZ01000105
Gammaproteobacteria
Escherichia coli [LOGZ]
19813
19889
+
Arg
TCT
[ENA]
¡û
>W1610789914
LOIF01000037
Gammaproteobacteria
Escherichia coli [LOIF]
69818
69742
-
Arg
TCT
[ENA]
¡û
>W1610971072
LVQZ01000144
Gammaproteobacteria
Escherichia coli [LVQZ]
7497
7421
-
Arg
TCT
[ENA]
¡û
>W1710719424
LFHV01000002
Gammaproteobacteria
Escherichia coli [LFHV]
14109
14185
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK