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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147105 (10 seq.)
>W1711021973
LQZQ01000012
Bacteroidota
Roseivirga ehrenbergii [LQZQ]
86891
86817
-
Arg
TCG
[ENA]
¡û
>W1711026993
LRDB01000002
Bacteroidota
Roseivirga echinicomitans [LRDB]
286640
286566
-
Arg
TCG
[ENA]
¡û
>W1711047556
LRPB01000048
Bacteroidota
Roseivirga seohaensis [LRPB]
245824
245898
+
Arg
TCG
[ENA]
¡û
>W1711356757
MDGP01000001
Bacteroidota
Roseivirga sp. 4D4 4D4 [MDGP]
2035171
2035247
+
Arg
TCG
[ENA]
¡û
>WENV180103628
OAPA01097685
[OAPA] marine metagenome; ENVO:00002010
254
328
+
Arg
TCG
[ENA]
¢þ
>WENV170155507
CEOG01037063
[CEOG] marine metagenome genome assembly TARA_034_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
229
303
+
Arg
TCG
[ENA]
¢þ
>W1511387659
JSVA01000008
Bacteroidota
Roseivirga seohaensis D-25 [JSVA]
311399
311325
-
Arg
TCG
[ENA]
¡û
>W1610870261
LQZQ01000012
Bacteroidota
Roseivirga ehrenbergii [LQZQ]
86891
86817
-
Arg
TCG
[ENA]
¡û
>W1610875105
LRDB01000002
Bacteroidota
Roseivirga echinicomitans [LRDB]
286640
286566
-
Arg
TCG
[ENA]
¡û
>W1610888685
LRPB01000048
Bacteroidota
Roseivirga seohaensis [LRPB]
245824
245898
+
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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