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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147214 (53 seq.)
>W1710862451
LMEJ01000015
Alphaproteobacteria
Sphingomonas sp. Root1294 [LMEJ]
128865
128941
+
Arg
CCT
[ENA]
¡û
>W1710863909
LMFM01000003
Alphaproteobacteria
Sphingomonas sp. Root50 [LMFM]
431781
431705
-
Arg
CCT
[ENA]
¡û
>W1710867270
LMID01000001
Alphaproteobacteria
Sphingomonas sp. Root720 [LMID]
131568
131644
+
Arg
CCT
[ENA]
¡û
>W1711072492
LSHQ01000030
Alphaproteobacteria
Sphingomonas sp. CCH5-A5 [LSHQ]
36976
36900
-
Arg
CCT
[ENA]
¡û
>W1711072774
LSHX01000033
Alphaproteobacteria
Sphingomonas sp. CCH21-G11 [LSHX]
216535
216611
+
Arg
CCT
[ENA]
¡û
>W1711073022
LSIE01000011
Alphaproteobacteria
Sphingomonas sp. CCH16-B10 [LSIE]
10455
10531
+
Arg
CCT
[ENA]
¡û
>W1711073968
LSJC01000053
Alphaproteobacteria
Sphingomonas sp. CCH20-B6 [LSJC]
4226
4150
-
Arg
CCT
[ENA]
¡û
>W1711075271
LSKG01000132
Alphaproteobacteria
Sphingomonas sp. CCH15-F11 [LSKG]
60418
60494
+
Arg
CCT
[ENA]
¡û
>W1711075343
LSKI01000062
Alphaproteobacteria
Sphingomonas sp. CCH18-H6 [LSKI]
15359
15435
+
Arg
CCT
[ENA]
¡û
>W1711075617
LSKO01001655
Alphaproteobacteria
Sphingomonas sp. CCH15-A1 [LSKO]
3958
4034
+
Arg
CCT
[ENA]
¡û
>W1711075653
LSKP01000031
Alphaproteobacteria
Sphingomonas sp. CCH13-B11 [LSKP]
59614
59690
+
Arg
CCT
[ENA]
¡û
>W1711437805
MIPT01000001
Alphaproteobacteria
Sphingomonas haloaromaticamans [MIPT]
853856
853780
-
Arg
CCT
[ENA]
¡û
>W1711603456
MOLY01000041
Alphaproteobacteria
Sphingomonas montana W16RD [MOLY]
192194
192118
-
Arg
CCT
[ENA]
¡û
>W1712049838
NFUR01000002
Alphaproteobacteria
Sphingomonas sp. IBVSS2 [NFUR]
541802
541878
+
Arg
CCT
[ENA]
¡û
>C171117053
CP021181
Alphaproteobacteria
Rhizorhabdus wittichii DC-6 [CP021181]
5063015
5063091
+
Arg
CCT
-
¡û
>W131196599
ASTM01000099
Alphaproteobacteria
Sphingomonas sp. YL-JM2C [ASTM]
5988
6064
+
Arg
CCT
[ENA]
¡û
>C024987
CP000699
Alphaproteobacteria
Rhizorhabdus wittichii RW1 [CP000699]
605555
605479
-
Arg
CCT
[Ensembl]
¡û
>WENV180100163
OAOK01000108
[OAOK] sediment metagenome; sediment
8548
8624
+
Arg
CCT
[ENA]
¢þ
>WENV180100446
OAON01002173
[OAON] sediment metagenome; sediment
1407
1331
-
Arg
CCT
[ENA]
¢þ
>WENV180355323
OBNH01000976
[OBNH] sediment metagenome; sediment
1676
1752
+
Arg
CCT
[ENA]
¢þ
>WENV180355554
OBNI01000728
[OBNI] sediment metagenome; sediment
931
1007
+
Arg
CCT
[ENA]
¢þ
>WENV180355851
OBNJ01001557
[OBNJ] sediment metagenome; sediment
842
918
+
Arg
CCT
[ENA]
¢þ
>WENV181402664
OFTY01015250
[OFTY] sludge metagenome; sludge
698
774
+
Arg
CCT
[ENA]
¢þ
>WENV170010487
APMI01018349
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
5956
5880
-
Arg
CCT
[ENA]
¢þ
>C181081624
CP023449
Alphaproteobacteria
Rhizorhabdus dicambivorans Ndbn-20 [CP023449]
2569286
2569210
-
Arg
CCT
-
¡û
>C191095131
CP032829
Alphaproteobacteria
Sphingomonas paeninsulae YZ-8 [CP032829]
2801050
2801126
+
Arg
CCT
-
¡û
>W141713963
JMUB01000097
Alphaproteobacteria
Rhizorhabdus wittichii DC-6 [JMUB]
18098
18174
+
Arg
CCT
[ENA]
¡û
>W09106516
AAVK01000004
Alphaproteobacteria
Rhizorhabdus wittichii RW1 [AAVK]
258079
258003
-
Arg
CCT
[ENA]
¡û
>C141006136
CP006644
Alphaproteobacteria
Sphingomonas sanxanigenens DSM 19645 = NX02 [CP006644]
2239309
2239233
-
Arg
CCT
[Ensembl]
¡û
>W1911391054
NWBU01000007
Alphaproteobacteria
Sphingomonas oleivorans FW-11 [NWBU]
282485
282561
+
Arg
CCT
[ENA]
¡û
>W1911398125
NWMW01000002
Alphaproteobacteria
Sphingomonas spermidinifaciens 9NM-10 [NWMW]
1039373
1039449
+
Arg
CCT
[ENA]
¡û
>W1911411129
NWUF01000001
Alphaproteobacteria
Rhizorhabdus dicambivorans Ndbn-20m [NWUF]
329141
329065
-
Arg
CCT
[ENA]
¡û
>W1911719126
QQWX01000011
Alphaproteobacteria
Sphingomonas sp. ABOLF ABOLF S-NIH.Pt19_1214 [QQWX]
3636
3560
-
Arg
CCT
[ENA]
¡û
>W1911752772
QWLV01000006
Alphaproteobacteria
Sphingomonas gilva ZDH117 [QWLV]
101914
101990
+
Arg
CCT
[ENA]
¡û
>W1810109395
PHHF01000041
Alphaproteobacteria
Sphingomonas fennica K101 [PHHF]
815
739
-
Arg
CCT
[ENA]
¡û
>W1810858407
QTJP01000001
Alphaproteobacteria
Sphingomonas crusticola MIMD3 [QTJP]
738703
738627
-
Arg
CCT
[ENA]
¡û
>W1511633037
LDES01000004
Alphaproteobacteria
Sphingomonas sp. Y57 [LDES]
7079
7003
-
Arg
CCT
[ENA]
¡û
>W121034412
AHKO01000003
Alphaproteobacteria
Rhizorhabdus wittichii DP58 [AHKO]
4795
4719
-
Arg
CCT
[ENA]
¡û
>C131011868
CP004036
Alphaproteobacteria
Sphingomonas sp. MM-1 [CP004036]
2834937
2834861
-
Arg
CCT
[Ensembl]
¡û
>W1610724797
LMEJ01000015
Alphaproteobacteria
Sphingomonas sp. Root1294 [LMEJ]
128865
128941
+
Arg
CCT
[ENA]
¡û
>W1610726255
LMFM01000003
Alphaproteobacteria
Sphingomonas sp. Root50 [LMFM]
431781
431705
-
Arg
CCT
[ENA]
¡û
>W1610729616
LMID01000001
Alphaproteobacteria
Sphingomonas sp. Root720 [LMID]
131568
131644
+
Arg
CCT
[ENA]
¡û
>W1610911752
LSHQ01000030
Alphaproteobacteria
Sphingomonas sp. CCH5-A5 [LSHQ]
36976
36900
-
Arg
CCT
[ENA]
¡û
>W1610912034
LSHX01000033
Alphaproteobacteria
Sphingomonas sp. CCH21-G11 [LSHX]
216535
216611
+
Arg
CCT
[ENA]
¡û
>W1610912327
LSIE01000011
Alphaproteobacteria
Sphingomonas sp. CCH16-B10 [LSIE]
10455
10531
+
Arg
CCT
[ENA]
¡û
>W1610913273
LSJC01000053
Alphaproteobacteria
Sphingomonas sp. CCH20-B6 [LSJC]
4226
4150
-
Arg
CCT
[ENA]
¡û
>W1610914576
LSKG01000132
Alphaproteobacteria
Sphingomonas sp. CCH15-F11 [LSKG]
60418
60494
+
Arg
CCT
[ENA]
¡û
>W1610914648
LSKI01000062
Alphaproteobacteria
Sphingomonas sp. CCH18-H6 [LSKI]
15359
15435
+
Arg
CCT
[ENA]
¡û
>W1610914922
LSKO01001655
Alphaproteobacteria
Sphingomonas sp. CCH15-A1 [LSKO]
3958
4034
+
Arg
CCT
[ENA]
¡û
>W1610914958
LSKP01000031
Alphaproteobacteria
Sphingomonas sp. CCH13-B11 [LSKP]
59614
59690
+
Arg
CCT
[ENA]
¡û
>W1710512397
FMZJ01000017
Alphaproteobacteria
Sphingomonas sp. YR710 [FMZJ]
33285
33209
-
Arg
CCT
[ENA]
¡û
>W1710602752
FUYM01000008
Alphaproteobacteria
Rhizorhabdus histidinilytica [FUYM]
155007
154931
-
Arg
CCT
[ENA]
¡û
>W1710743451
LGVA01000001
Alphaproteobacteria
Sphingomonas sp. Ndbn-20 [LGVA]
329064
328988
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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