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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147216 (86 seq.)
>W1711018548
LQXA01000019
Actinomycetota
Clavibacter michiganensis subsp. tessellarius [LQXA]
65734
65658
-
Ile
GAT
[ENA]
¡û
>W1711079613
LSOE01000011
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis [LSOE]
135665
135741
+
Ile
GAT
[ENA]
¡û
>W1711357162
MDHB01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHB]
1125698
1125774
+
Ile
GAT
[ENA]
¡û
>W1711357202
MDHC01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHC]
11222
11298
+
Ile
GAT
[ENA]
¡û
>W1711357258
MDHD01000128
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHD]
34536
34612
+
Ile
GAT
[ENA]
¡û
>W1711357307
MDHE01000257
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHE]
34670
34746
+
Ile
GAT
[ENA]
¡û
>W1711357346
MDHF01000036
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHF]
11163
11239
+
Ile
GAT
[ENA]
¡û
>W1711357390
MDHG01000002
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHG]
1659793
1659869
+
Ile
GAT
[ENA]
¡û
>W1711357427
MDHH01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHH]
971240
971316
+
Ile
GAT
[ENA]
¡û
>W1711357507
MDHI01000024
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHI]
533509
533585
+
Ile
GAT
[ENA]
¡û
>W1711357516
MDHJ01000001
Actinomycetota
Clavibacter michiganensis [MDHJ]
11330
11406
+
Ile
GAT
[ENA]
¡û
>W1711357592
MDHK01000066
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHK]
79005
79081
+
Ile
GAT
[ENA]
¡û
>W1711357606
MDHL01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHL]
11222
11298
+
Ile
GAT
[ENA]
¡û
>W1711357651
MDHM01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHM]
11222
11298
+
Ile
GAT
[ENA]
¡û
>W1711360713
MDJW01000009
Actinomycetota
Clavibacter michiganensis [MDJW]
66449
66373
-
Ile
GAT
[ENA]
¡û
>W1711360759
MDJX01000259
Actinomycetota
Clavibacter michiganensis [MDJX]
8017
7941
-
Ile
GAT
[ENA]
¡û
>W1711360813
MDJY01000060
Actinomycetota
Clavibacter michiganensis [MDJY]
154771
154695
-
Ile
GAT
[ENA]
¡û
>W1711360853
MDJZ01000017
Actinomycetota
Clavibacter michiganensis [MDJZ]
395343
395419
+
Ile
GAT
[ENA]
¡û
>W131235546
AULR01000004
Actinomycetota
Microbacterium indicum DSM 19969 [AULR]
7921
7847
-
Ile
GAT
[ENA]
¡û
>C006133
AM711867
Actinomycetota
Clavibacter michiganensis subsp. michiganensis NCPPB 382 [AM711867]
11222
11298
+
Ile
GAT
[Ensembl]
¡û
>W141212778
AZQZ01000003
Actinomycetota
Clavibacter michiganensis michiganensis LMG 26808 [AZQZ]
60628
60552
-
Ile
GAT
[ENA]
¡û
>C08003530
AM849034
Actinomycetota
Clavibacter michiganensis subsp. sepedonicus ATCC 33113 [AM849034]
12281
12357
+
Ile
GAT
[Ensembl]
¡û
>WENV170700538
LIDZ01015143
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
7013
6937
-
Ile
GAT
[ENA]
¢þ
>WENV170784310
MCHG01000712
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
6099
6173
+
Ile
GAT
[ENA]
¢þ
>C181048867
CP021034
Actinomycetota
Clavibacter michiganensis subsp. insidiosus R1-3 [CP021034]
11230
11306
+
Ile
GAT
-
¡û
>C181048911
CP021038
Actinomycetota
Clavibacter michiganensis subsp. insidiosus ATCC 10253 [CP021038]
11230
11306
+
Ile
GAT
-
¡û
>W141532279
JHET01000010
Actinomycetota
Microbacterium sp. CH12i [JHET]
416974
417048
+
Ile
GAT
[ENA]
¡û
>W141809727
JPRS01000418
Actinomycetota
Cryobacterium sp. MLB-32 [JPRS]
1028
954
-
Ile
GAT
[ENA]
¡û
>W141809731
JPRS01000645
Actinomycetota
Cryobacterium sp. MLB-32 [JPRS]
229
155
-
Ile
GAT
[ENA]
¡û
>W1910839665
MZMM01000001
Actinomycetota
Clavibacter sepedonicus subsp. sepedonicus CFIA-Cs3N [MZMM]
2210321
2210397
+
Ile
GAT
[ENA]
¡û
>W1910839704
MZMN01000003
Actinomycetota
Clavibacter sepedonicus subsp. sepedonicus CFIA-CsR14 [MZMN]
1802191
1802267
+
Ile
GAT
[ENA]
¡û
>W1910839777
MZMO01000001
Actinomycetota
Clavibacter michiganensis subsp. insidiosus LMG 3663 [MZMO]
235688
235612
-
Ile
GAT
[ENA]
¡û
>W1910839818
MZMP01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis LMG 7333 [MZMP]
1055437
1055361
-
Ile
GAT
[ENA]
¡û
>W1910839861
MZMQ01000001
Actinomycetota
Clavibacter michiganensis subsp. tessellarius ATCC 33566 [MZMQ]
1150864
1150788
-
Ile
GAT
[ENA]
¡û
>W1910857483
NBWZ01000001
Actinomycetota
Subtercola boreus K300 [NBWZ]
10826
10901
+
Ile
GAT
[ENA]
¡û
>W1910857527
NBXA01000001
Actinomycetota
Subtercola boreus P27444 [NBXA]
77157
77232
+
Ile
GAT
[ENA]
¡û
>W1910857571
NBXB01000001
Actinomycetota
Subtercola boreus P27479 [NBXB]
78841
78916
+
Ile
GAT
[ENA]
¡û
>W1910857617
NBXC01000002
Actinomycetota
Subtercola boreus P27924 [NBXC]
125812
125888
+
Ile
GAT
[ENA]
¡û
>W1910857660
NBXD01000002
Actinomycetota
Subtercola boreus P27979 [NBXD]
125812
125888
+
Ile
GAT
[ENA]
¡û
>W1910857703
NBXE01000002
Actinomycetota
Subtercola boreus P28004 [NBXE]
125812
125888
+
Ile
GAT
[ENA]
¡û
>W1911748133
QWDZ01000006
Actinomycetota
Clavibacter michiganensis CFBP 1195 [QWDZ]
20276
20352
+
Ile
GAT
[ENA]
¡û
>W1911748169
QWEA01000001
Actinomycetota
Clavibacter michiganensis CFBP 6488 [QWEA]
20020
20096
+
Ile
GAT
[ENA]
¡û
>W1911748212
QWEB01000009
Actinomycetota
Clavibacter michiganensis CFBP 7491 [QWEB]
24894
24970
+
Ile
GAT
[ENA]
¡û
>W1911748256
QWEC01000005
Actinomycetota
Clavibacter michiganensis CFBP 7493 [QWEC]
7899
7823
-
Ile
GAT
[ENA]
¡û
>W1911748299
QWED01000001
Actinomycetota
Clavibacter nebraskensis CFBP 7577 [QWED]
26191
26267
+
Ile
GAT
[ENA]
¡û
>W1911748342
QWEE01000005
Actinomycetota
Clavibacter californiensis subsp. californiensis CFBP 8216 [QWEE]
3172
3096
-
Ile
GAT
[ENA]
¡û
>W1911749560
QWGS01000003
Actinomycetota
Clavibacter phaseoli subsp. chilensis CFBP 8217 [QWGS]
24376
24452
+
Ile
GAT
[ENA]
¡û
>W1911749605
QWGT01000002
Actinomycetota
Clavibacter lycopersici CFBP 8615 [QWGT]
6956
6880
-
Ile
GAT
[ENA]
¡û
>W1911749648
QWGU01000003
Actinomycetota
Clavibacter lycopersici CFBP 8616 [QWGU]
6946
6870
-
Ile
GAT
[ENA]
¡û
>W1911749690
QWGV01000001
Actinomycetota
Clavibacter phaseoli subsp. phaseoli CFBP 8627 [QWGV]
24402
24478
+
Ile
GAT
[ENA]
¡û
>W1911798559
QYRT01000001
Actinomycetota
Subtercola vilae DB165 [QYRT]
23087
23013
-
Ile
GAT
[ENA]
¡û
>W1911823612
QZVS01000092
Actinomycetota
Cryobacterium melibiosiphilum Hh39 [QZVS]
99020
98946
-
Ile
GAT
[ENA]
¡û
>W1810091064
PGGU01000016
Actinomycetota
Microbacterium aurantiacum Sa12 [PGGU]
363719
363793
+
Ile
GAT
[ENA]
¡û
>W1810168613
PJJJ01000030
Actinomycetota
Cryobacterium sp. Y82 [PJJJ]
134529
134603
+
Ile
GAT
[ENA]
¡û
>W1810168643
PJJK01000084
Actinomycetota
Cryobacterium sp. Y62 [PJJK]
19411
19337
-
Ile
GAT
[ENA]
¡û
>W1810168711
PJJL01000072
Actinomycetota
Cryobacterium sp. Y57 [PJJL]
176001
176075
+
Ile
GAT
[ENA]
¡û
>W1810168766
PJJM01000105
Actinomycetota
Cryobacterium sp. Y50 [PJJM]
29395
29321
-
Ile
GAT
[ENA]
¡û
>W1810168782
PJJN01000029
Actinomycetota
Cryobacterium sp. Y29 [PJJN]
24154
24080
-
Ile
GAT
[ENA]
¡û
>W1810168844
PJJO01000059
Actinomycetota
Cryobacterium sp. Y11 [PJJO]
49796
49722
-
Ile
GAT
[ENA]
¡û
>W1810168916
PJJQ01000030
Actinomycetota
Cryobacterium sp. N21 [PJJQ]
38391
38317
-
Ile
GAT
[ENA]
¡û
>W1810168971
PJJR01000052
Actinomycetota
Cryobacterium sp. N19 [PJJR]
222915
222841
-
Ile
GAT
[ENA]
¡û
>W1810169061
PJJT01000089
Actinomycetota
Cryobacterium sp. M91 [PJJT]
131275
131201
-
Ile
GAT
[ENA]
¡û
>W1810169193
PJJW01000038
Actinomycetota
Cryobacterium sp. M15 [PJJW]
148079
148005
-
Ile
GAT
[ENA]
¡û
>W1810240365
PPTG01000022
Actinomycetota
Cryobacterium aureum Hh31 [PPTG]
50281
50355
+
Ile
GAT
[ENA]
¡û
>W1810277243
PSTR01000006
Actinomycetota
Clavibacter michiganensis AY1B2 [PSTR]
70407
70331
-
Ile
GAT
[ENA]
¡û
>W1810277279
PSTS01000006
Actinomycetota
Clavibacter michiganensis AY1A6 [PSTS]
66690
66614
-
Ile
GAT
[ENA]
¡û
>W1810277338
PSTT01000094
Actinomycetota
Subtercola sp. Z020 [PSTT]
22261
22186
-
Ile
GAT
[ENA]
¡û
>W1810277394
PSTV01000001
Actinomycetota
Clavibacter michiganensis Z002 [PSTV]
319401
319477
+
Ile
GAT
[ENA]
¡û
>W1810277484
PSTW01000030
Actinomycetota
Clavibacter michiganensis Z001 [PSTW]
343884
343960
+
Ile
GAT
[ENA]
¡û
>W1810282066
PSXY01000003
Actinomycetota
Clavibacter michiganensis AY1B3 [PSXY]
181102
181178
+
Ile
GAT
[ENA]
¡û
>W1810364708
PVTL01000005
Actinomycetota
Glaciihabitans tibetensis CGMCC 1.12484 [PVTL]
137021
136947
-
Ile
GAT
[ENA]
¡û
>W1810860773
QTTK01000001
Actinomycetota
Clavibacter sp. 199 [QTTK]
1108585
1108509
-
Ile
GAT
[ENA]
¡û
>C151075627
CP011043
Actinomycetota
Clavibacter michiganensis subsp. insidiosus R1-1 [CP011043]
11230
11306
+
Ile
GAT
[Ensembl]
¡û
>C151095688
CP012573
Actinomycetota
Clavibacter capsici PF008 [CP012573]
11243
11319
+
Ile
GAT
-
¡û
>W1511313225
JPSY01000001
Actinomycetota
Microbacterium profundi Shh49 [JPSY]
1503293
1503219
-
Ile
GAT
[ENA]
¡û
>W1511317415
JPXF01000008
Actinomycetota
Cryobacterium roopkundense RuG17 [JPXF]
19314
19240
-
Ile
GAT
[ENA]
¡û
>W1511352429
JROD01000002
Actinomycetota
Clavibacter michiganensis CF11 [JROD]
40982
40906
-
Ile
GAT
[ENA]
¡û
>W1511570112
LAKL01000028
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis DOAB 397 [LAKL]
83029
83105
+
Ile
GAT
[ENA]
¡û
>C131019520
HE614873
Actinomycetota
Clavibacter nebraskensis NCPPB 2581 type strain: NCPPB 2581 [HE614873]
11216
11292
+
Ile
GAT
[Ensembl]
¡û
>W1610867024
LQXA01000019
Actinomycetota
Clavibacter michiganensis subsp. tessellarius [LQXA]
65734
65658
-
Ile
GAT
[ENA]
¡û
>W1610918523
LSOE01000011
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis [LSOE]
135665
135741
+
Ile
GAT
[ENA]
¡û
>W1710520647
FNFU01000005
Actinomycetota
Cryobacterium psychrotolerans [FNFU]
154732
154658
-
Ile
GAT
[ENA]
¡û
>W1710523515
FNIB01000001
Actinomycetota
Cryobacterium flavum [FNIB]
234158
234232
+
Ile
GAT
[ENA]
¡û
>W1710546929
FOCN01000010
Actinomycetota
Cryobacterium luteum [FOCN]
71686
71760
+
Ile
GAT
[ENA]
¡û
>W1710563660
FOPW01000001
Actinomycetota
Cryobacterium levicorallinum [FOPW]
203130
203204
+
Ile
GAT
[ENA]
¡û
>W1710604673
FVZG01000002
Actinomycetota
Clavibacter michiganensis [FVZG]
27799
27723
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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