This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147229 (79 seq.)
>W1711120571
LUGK01000007
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LUGK]
37786
37711
-
Pro
CGG
[ENA]
¡û
>W1711167777
LVWX01000004
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWX]
55310
55385
+
Pro
CGG
[ENA]
¡û
>W1711167845
LVWY01000005
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWY]
55256
55331
+
Pro
CGG
[ENA]
¡û
>W1711185048
LWNA01000135
Bacillota
Lactobacillus sp. HMSC08B12 [LWNA]
43012
42937
-
Pro
CGG
[ENA]
¡û
>W131204307
ATBQ01000019
Bacillota
Lactobacillus delbrueckii subsp. lactis CRL581 [ATBQ]
36486
36411
-
Pro
CGG
[ENA]
¡û
>W1711665873
MRBF01000002
Bacillota
Lactobacillus delbrueckii subsp. lactis [MRBF]
777438
777513
+
Pro
CGG
[ENA]
¡û
>W1711678841
MRUN01000012
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [MRUN]
1047065
1046990
-
Pro
CGG
[ENA]
¡û
>C171048725
CP016393
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ND04 [CP016393]
640940
640865
-
Pro
CGG
-
¡û
>C171074219
CP018156
Bacillota
Lactobacillus delbrueckii subsp. lactis KCTC 3035 [CP018156]
1223313
1223238
-
Pro
CGG
-
¡û
>C171075529
CP018215
Bacillota
Lactobacillus delbrueckii subsp. lactis KCCM 34717 [CP018215]
1454024
1453949
-
Pro
CGG
-
¡û
>C171075560
CP018216
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii KCTC 13731 [CP018216]
336376
336451
+
Pro
CGG
-
¡û
>C171075644
CP018217
Bacillota
Lactobacillus delbrueckii subsp. sunkii JCM 17838 [CP018217]
361645
361720
+
Pro
CGG
-
¡û
>C171075739
CP018218
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 [CP018218]
695772
695847
+
Pro
CGG
-
¡û
>C171081316
CP018614
Bacillota
Lactobacillus delbrueckii subsp. indicus JCM 15610 [CP018614]
328369
328444
+
Pro
CGG
-
¡û
>C171089391
CP019120
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus DSM 20080 [CP019120]
317759
317834
+
Pro
CGG
-
¡û
>C171116187
CP021136
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii TUA4408L [CP021136]
1407519
1407594
+
Pro
CGG
-
¡û
>C011347
CR954253
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 [CR954253]
330584
330657
+
Pro
CGG
[Ensembl]
¡û
>C011500
CP000412
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 [CP000412]
325143
325216
+
Pro
CGG
[Ensembl]
¡û
>W141037884
ALPY01000025
Bacillota
Lactobacillus delbrueckii ZN7a-9 [ALPY]
203
128
-
Pro
CGG
[ENA]
¡û
>W141228003
BALP01000007
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii JCM 1012 [BALP]
13348
13423
+
Pro
CGG
[ENA]
¡û
>W141246049
CALZ01000086
Bacillota
Lactobacillus equicursoris 66c [CALZ]
1302
1377
+
Pro
CGG
[ENA]
¡û
>W141246058
CALZ01000095
Bacillota
Lactobacillus equicursoris 66c [CALZ]
1302
1377
+
Pro
CGG
[ENA]
¡û
>W141246107
CAMA01000026
Bacillota
Lactobacillus equicursoris CIP 110162 [CAMA]
1308
1383
+
Pro
CGG
[ENA]
¡û
>W141264053
CCDV01000001
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDV]
450483
450558
+
Pro
CGG
[ENA]
¡û
>W141264911
CCET01000002
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CCET]
281904
281979
+
Pro
CGG
[ENA]
¡û
>W141264995
CCEU01000001
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CCEU]
279860
279935
+
Pro
CGG
[ENA]
¡û
>WENV183123125
OLNW01000287
[OLNW] human gut metagenome; faeces
12037
11962
-
Pro
CGG
[ENA]
¢þ
>WENV183772295
PPYF01016719
[PPYF] human gut metagenome; stool from patient with Crohn's disease
3674
3749
+
Pro
CGG
[ENA]
¢þ
>WENV183785833
PPYF01298397
[PPYF] human gut metagenome; stool from patient with Crohn's disease
57882
57807
-
Pro
CGG
[ENA]
¢þ
>C181024936
CP017235
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus L99 [CP017235]
312138
312213
+
Pro
CGG
-
¡û
>C181074525
CP022988
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [CP022988]
654544
654619
+
Pro
CGG
-
¡û
>C181076012
CP023139
Bacillota
Lactobacillus delbrueckii subsp. lactis KCTC 3034 [CP023139]
399806
399881
+
Pro
CGG
-
¡û
>C181221046
LT899687
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LT899687]
318143
318218
+
Pro
CGG
-
¡û
>C191063380
CP029250
Bacillota
Lactobacillus delbrueckii [CP029250]
412016
412091
+
Pro
CGG
-
¡û
>C191090025
CP032451
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus KLDS1.0207 [CP032451]
642884
642809
-
Pro
CGG
-
¡û
>C191224657
LS991409
Bacillota
Lactobacillus delbrueckii subsp. lactis [LS991409]
360029
360104
+
Pro
CGG
-
¡û
>W09101758
AAGQ01000018
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 [AAGQ]
99
24
-
Pro
CGG
[ENA]
¡û
>W1910180890
BJLM01000001
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii NBRC 3534 [BJLM]
99766
99691
-
Pro
CGG
[ENA]
¡û
>W1910180976
BJLO01000001
Bacillota
Lactobacillus delbrueckii subsp. lactis NBRC 3734 [BJLO]
26813
26888
+
Pro
CGG
[ENA]
¡û
>W1910182483
BJMY01000001
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus NBRC 13953 [BJMY]
52062
52137
+
Pro
CGG
[ENA]
¡û
>W1910186265
CCDS01000001
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDS]
329565
329640
+
Pro
CGG
[ENA]
¡û
>W1910186344
CCDT01000001
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDT]
361195
361120
-
Pro
CGG
[ENA]
¡û
>W1910186424
CCDU01000004
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDU]
46870
46945
+
Pro
CGG
[ENA]
¡û
>W1911631579
PUFG01000032
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii DSM 26046 [PUFG]
56946
57021
+
Pro
CGG
[ENA]
¡û
>W1911702051
QNXB01000001
Bacillota
Lactobacillus delbrueckii TJA31 [QNXB]
369446
369371
-
Pro
CGG
[ENA]
¡û
>W1810000497
BEWJ01000001
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii NBRC 3202 [BEWJ]
49653
49728
+
Pro
CGG
[ENA]
¡û
>W1810190876
PKKE01000006
Bacillota
Lactobacillus delbrueckii UMB0003 [PKKE]
15998
15923
-
Pro
CGG
[ENA]
¡û
>W1810445103
PZKI01000001
Bacillota
Lactobacillus delbrueckii AVK [PZKI]
52713
52788
+
Pro
CGG
[ENA]
¡û
>W1810744646
QOVB01000001
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus MBT 92059 [QOVB]
405585
405510
-
Pro
CGG
[ENA]
¡û
>W10124033
AEAT01000065
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 [AEAT]
11358
11283
-
Pro
CGG
[ENA]
¡û
>C11112425
CP000156
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus 2038 [CP000156]
321632
321707
+
Pro
CGG
[Ensembl]
¡û
>C11112514
CP002341
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ND02 [CP002341]
339168
339243
+
Pro
CGG
[Ensembl]
¡û
>W11130870
AEAT01000065
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 [AEAT]
11358
11283
-
Pro
CGG
[ENA]
¡û
>W1511510303
JXRV01000064
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus CRL871 [JXRV]
48041
47966
-
Pro
CGG
[ENA]
¡û
>W11152244
AEXU01000118
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [AEXU]
46861
46936
+
Pro
CGG
[ENA]
¡û
>W1511694234
LGAS01000018
Bacillota
Lactobacillus delbrueckii subsp. indicus JCM 15610 [LGAS]
989
1064
+
Pro
CGG
[ENA]
¡û
>W1511698286
LGHR01000007
Bacillota
Lactobacillus delbrueckii subsp. sunkii JCM 17838 [LGHR]
3638
3713
+
Pro
CGG
[ENA]
¡û
>C161057553
CP013610
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus MN-BM-F01 [CP013610]
324629
324704
+
Pro
CGG
[Ensembl]
¡û
>W121009777
AGFO01000039
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1632 [AGFO]
57125
57200
+
Pro
CGG
[ENA]
¡û
>W121010036
AGHW01000010
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1519 [AGHW]
56758
56833
+
Pro
CGG
[ENA]
¡û
>W1610033075
AZCR01000007
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii DSM 20074 = JCM 1012 [AZCR]
30160
30085
-
Pro
CGG
[ENA]
¡û
>W1610033760
AZDE01000214
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [AZDE]
31
106
+
Pro
CGG
[ENA]
¡û
>W1610034528
AZDU01000158
Bacillota
Lactobacillus equicursoris DSM 19284 = JCM 14600 = CIP 110162 [AZDU]
237
162
-
Pro
CGG
[ENA]
¡û
>W1610036659
AZFL01000077
Bacillota
Lactobacillus delbrueckii subsp. indicus DSM 15996 [AZFL]
919
994
+
Pro
CGG
[ENA]
¡û
>W1610044391
BBAN01000001
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 [BBAN]
56711
56786
+
Pro
CGG
[ENA]
¡û
>W1610045821
BBBW01000013
Bacillota
Lactobacillus equicursoris DSM 19284 = JCM 14600 = CIP 110162 [BBBW]
12837
12762
-
Pro
CGG
[ENA]
¡û
>W1610120869
CZPS01000004
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CZPS]
95770
95695
-
Pro
CGG
[ENA]
¡û
>W1610502757
FLLT01000005
Bacillota
Lactobacillus delbrueckii [FLLT]
79786
79859
+
Pro
CGG
[ENA]
¡û
>W1610527962
JQAV01000001
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 DSM 20081 [JQAV]
359020
358945
-
Pro
CGG
[ENA]
¡û
>W1610931768
LUGK01000007
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LUGK]
37786
37711
-
Pro
CGG
[ENA]
¡û
>W1610977846
LVWX01000004
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWX]
55310
55385
+
Pro
CGG
[ENA]
¡û
>W1610977914
LVWY01000005
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWY]
55256
55331
+
Pro
CGG
[ENA]
¡û
>W1710030347
AZCR01000007
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii DSM 20074 = JCM 1012 [AZCR]
30160
30085
-
Pro
CGG
[ENA]
¡û
>W1710030938
AZDE01000214
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [AZDE]
31
106
+
Pro
CGG
[ENA]
¡û
>W1710031655
AZDU01000158
Bacillota
Lactobacillus equicursoris DSM 19284 = JCM 14600 = CIP 110162 [AZDU]
237
162
-
Pro
CGG
[ENA]
¡û
>W1710033698
AZFL01000077
Bacillota
Lactobacillus delbrueckii subsp. indicus DSM 15996 [AZFL]
919
994
+
Pro
CGG
[ENA]
¡û
>W1710042662
BBBW01000013
Bacillota
Lactobacillus equicursoris DSM 19284 = JCM 14600 = CIP 110162 [BBBW]
12837
12762
-
Pro
CGG
[ENA]
¡û
>W1710123573
CZPS01000004
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CZPS]
95770
95695
-
Pro
CGG
[ENA]
¡û
>W1710496156
FLLT01000005
Bacillota
Lactobacillus delbrueckii [FLLT]
79786
79859
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK