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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147277 (71 seq.)
>W1711005277
LQNM01000004
Bacillota
Pediococcus pentosaceus [LQNM]
66431
66504
+
Arg
TCT
[ENA]
¡û
>W1711068936
LSFE01000002
Bacillota
Pediococcus pentosaceus [LSFE]
102300
102227
-
Arg
TCT
[ENA]
¡û
>W1711147965
LVKC01000028
Bacillota
Ligilactobacillus aviarius [LVKC]
17346
17422
+
Arg
TCT
[ENA]
¡û
>W1711148003
LVKD01000025
Bacillota
Ligilactobacillus aviarius [LVKD]
37942
37866
-
Arg
TCT
[ENA]
¡û
>W1711148083
LVKE01000052
Bacillota
Ligilactobacillus aviarius [LVKE]
17346
17422
+
Arg
TCT
[ENA]
¡û
>W1711148117
LVKF01000014
Bacillota
Ligilactobacillus aviarius [LVKF]
73487
73563
+
Arg
TCT
[ENA]
¡û
>W1711148208
LVKG01000056
Bacillota
Ligilactobacillus aviarius [LVKG]
68461
68385
-
Arg
TCT
[ENA]
¡û
>W1711148254
LVKH01000028
Bacillota
Ligilactobacillus aviarius [LVKH]
37942
37866
-
Arg
TCT
[ENA]
¡û
>W1711148330
LVKI01000054
Bacillota
Ligilactobacillus aviarius [LVKI]
37943
37867
-
Arg
TCT
[ENA]
¡û
>W1711148366
LVKJ01000028
Bacillota
Ligilactobacillus aviarius [LVKJ]
65367
65291
-
Arg
TCT
[ENA]
¡û
>W1711192868
LWUC01000033
Bacillota
Ligilactobacillus aviarius [LWUC]
17507
17583
+
Arg
TCT
[ENA]
¡û
>W1711192953
LWUD01000026
Bacillota
Ligilactobacillus aviarius [LWUD]
64147
64071
-
Arg
TCT
[ENA]
¡û
>W1711193014
LWUE01000070
Bacillota
Ligilactobacillus aviarius [LWUE]
73487
73563
+
Arg
TCT
[ENA]
¡û
>W1711193025
LWUF01000025
Bacillota
Ligilactobacillus aviarius [LWUF]
38241
38165
-
Arg
TCT
[ENA]
¡û
>W1711193104
LWUG01000031
Bacillota
Ligilactobacillus aviarius [LWUG]
17346
17422
+
Arg
TCT
[ENA]
¡û
>W131230427
AUHP01000010
Bacillota
Ligilactobacillus ceti DSM 22408 [AUHP]
51821
51744
-
Arg
TCT
[ENA]
¡û
>C171119466
CP021474
Bacillota
Pediococcus pentosaceus SRCM100892 [CP021474]
1050077
1050150
+
Arg
TCT
-
¡û
>C171126484
CP021927
Bacillota
Pediococcus pentosaceus SRCM100194 [CP021927]
1012571
1012644
+
Arg
TCT
-
¡û
>C171129752
LT630287
Bacillota
Ligilactobacillus acidipiscis ACA-DC 1533 [LT630287]
1433271
1433346
+
Arg
TCT
-
¡û
>C017454
CP000422
Bacillota
Pediococcus pentosaceus ATCC 25745 [CP000422]
818812
818739
-
Arg
TCT
[Ensembl]
¡û
>WENV180279383
OBHX01032906
[OBHX] metagenome; feces
496
569
+
Arg
TCT
[ENA]
¢þ
>WENV180334235
OBLF01007063
[OBLF] metagenome; feces
2513
2586
+
Arg
TCT
[ENA]
¢þ
>WENV180349611
OBLO01070467
[OBLO] metagenome; feces
662
735
+
Arg
TCT
[ENA]
¢þ
>W141241967
CAHU01000006
Bacillota
Pediococcus pentosaceus IE-3 [CAHU]
16822
16749
-
Arg
TCT
[ENA]
¡û
>WENV183511688
OMJG01001963
[OMJG] food metagenome; Cotija cheese
10734
10809
+
Arg
TCT
[ENA]
¢þ
>WENV183790291
PPYF01411172
[PPYF] human gut metagenome; stool from patient with Crohn's disease
138391
138318
-
Arg
TCT
[ENA]
¢þ
>W141402955
JDVW01000006
Bacillota
Pediococcus pentosaceus CGMCC 7049 [JDVW]
178550
178477
-
Arg
TCT
[ENA]
¡û
>WENV170659149
JXWR01000625
[JXWR] soil metagenome; rice field; ambient CO2
13349
13422
+
Arg
TCT
[ENA]
¢þ
>C181042813
CP020018
Bacillota
Pediococcus pentosaceus KCCM 40703 [CP020018]
97843
97770
-
Arg
TCT
-
¡û
>C191023265
CP023008
Bacillota
Pediococcus pentosaceus SS1-3 [CP023008]
742513
742440
-
Arg
TCT
-
¡û
>W09101479
AAEV01000032
Bacillota
Pediococcus pentosaceus ATCC 25745 [AAEV]
10371
10298
-
Arg
TCT
[ENA]
¡û
>W1910067627
BFFP01000025
Bacillota
Ligilactobacillus salitolerans YK43 [BFFP]
929
1004
+
Arg
TCT
[ENA]
¡û
>C141009523
CP006854
Bacillota
Pediococcus pentosaceus SL4 [CP006854]
791418
791345
-
Arg
TCT
[Ensembl]
¡û
>W1911631260
PUFB01000007
Bacillota
Pediococcus pentosaceus ATCC 33316 [PUFB]
227433
227506
+
Arg
TCT
[ENA]
¡û
>W1810000828
BEWQ01000003
Bacillota
Pediococcus pentosaceus NBRC 3182 [BEWQ]
289450
289523
+
Arg
TCT
[ENA]
¡û
>W1810049991
PCZO01000006
Bacillota
Ligilactobacillus aviarius UMNLAv98 [PCZO]
68571
68495
-
Arg
TCT
[ENA]
¡û
>W1810050044
PCZP01000003
Bacillota
Ligilactobacillus aviarius UMNLAv97 [PCZP]
17346
17422
+
Arg
TCT
[ENA]
¡û
>W1810050101
PCZQ01000015
Bacillota
Ligilactobacillus aviarius UMNLAv76 [PCZQ]
68471
68395
-
Arg
TCT
[ENA]
¡û
>W11185029
BACS01000023
Bacillota
Ligilactobacillus acidipiscis KCTC 13900 [BACS]
250
325
+
Arg
TCT
[ENA]
¡û
>C161092333
CP015918
Bacillota
Pediococcus pentosaceus wikim20 [CP015918]
1219504
1219577
+
Arg
TCT
[Ensembl]
¡û
>W1610031666
AYYZ01000029
Bacillota
Ligilactobacillus araffinosus subsp. araffinosus DSM 20653 [AYYZ]
191556
191480
-
Arg
TCT
[ENA]
¡û
>W1610031702
AYZA01000022
Bacillota
Ligilactobacillus aviarius subsp. aviarius DSM 20655 [AYZA]
192013
191937
-
Arg
TCT
[ENA]
¡û
>W1610036479
AZFI01000003
Bacillota
Ligilactobacillus acidipiscis DSM 15836 [AZFI]
37633
37708
+
Arg
TCT
[ENA]
¡û
>W1610057788
BBZC01000014
Bacillota
Pediococcus pentosaceus [BBZC]
104454
104381
-
Arg
TCT
[ENA]
¡û
>W1610528402
JQBF01000002
Bacillota
Pediococcus pentosaceus [JQBF]
104658
104585
-
Arg
TCT
[ENA]
¡û
>W1610529214
JQBX01000001
Bacillota
Pediococcus stilesii [JQBX]
159325
159252
-
Arg
TCT
[ENA]
¡û
>W1610529333
JQBZ01000025
Bacillota
Ligilactobacillus ceti DSM 22408 [JQBZ]
306889
306812
-
Arg
TCT
[ENA]
¡û
>W1610650089
LJIU01000004
Bacillota
Pediococcus pentosaceus wikim20 [LJIU]
16845
16772
-
Arg
TCT
[ENA]
¡û
>W1610855927
LQNM01000004
Bacillota
Pediococcus pentosaceus [LQNM]
66431
66504
+
Arg
TCT
[ENA]
¡û
>W1610909506
LSFE01000002
Bacillota
Pediococcus pentosaceus [LSFE]
102300
102227
-
Arg
TCT
[ENA]
¡û
>W1610958696
LVKC01000028
Bacillota
Ligilactobacillus aviarius [LVKC]
17346
17422
+
Arg
TCT
[ENA]
¡û
>W1610958734
LVKD01000025
Bacillota
Ligilactobacillus aviarius [LVKD]
37942
37866
-
Arg
TCT
[ENA]
¡û
>W1610958814
LVKE01000052
Bacillota
Ligilactobacillus aviarius [LVKE]
17346
17422
+
Arg
TCT
[ENA]
¡û
>W1610958848
LVKF01000014
Bacillota
Ligilactobacillus aviarius [LVKF]
73487
73563
+
Arg
TCT
[ENA]
¡û
>W1610958939
LVKG01000056
Bacillota
Ligilactobacillus aviarius [LVKG]
68461
68385
-
Arg
TCT
[ENA]
¡û
>W1610958985
LVKH01000028
Bacillota
Ligilactobacillus aviarius [LVKH]
37942
37866
-
Arg
TCT
[ENA]
¡û
>W1610959061
LVKI01000054
Bacillota
Ligilactobacillus aviarius [LVKI]
37943
37867
-
Arg
TCT
[ENA]
¡û
>W1610959097
LVKJ01000028
Bacillota
Ligilactobacillus aviarius [LVKJ]
65367
65291
-
Arg
TCT
[ENA]
¡û
>W1610993631
LWUC01000033
Bacillota
Ligilactobacillus aviarius [LWUC]
17507
17583
+
Arg
TCT
[ENA]
¡û
>W1610993716
LWUD01000026
Bacillota
Ligilactobacillus aviarius [LWUD]
64147
64071
-
Arg
TCT
[ENA]
¡û
>W1610993777
LWUE01000070
Bacillota
Ligilactobacillus aviarius [LWUE]
73487
73563
+
Arg
TCT
[ENA]
¡û
>W1610993788
LWUF01000025
Bacillota
Ligilactobacillus aviarius [LWUF]
38241
38165
-
Arg
TCT
[ENA]
¡û
>W1610993867
LWUG01000031
Bacillota
Ligilactobacillus aviarius [LWUG]
17346
17422
+
Arg
TCT
[ENA]
¡û
>W1710028593
AYYZ01000029
Bacillota
Ligilactobacillus araffinosus subsp. araffinosus DSM 20653 [AYYZ]
191556
191480
-
Arg
TCT
[ENA]
¡û
>W1710028629
AYZA01000022
Bacillota
Ligilactobacillus aviarius subsp. aviarius DSM 20655 [AYZA]
192013
191937
-
Arg
TCT
[ENA]
¡û
>W1710033518
AZFI01000003
Bacillota
Ligilactobacillus acidipiscis DSM 15836 [AZFI]
37633
37708
+
Arg
TCT
[ENA]
¡û
>W1710054487
BBZC01000014
Bacillota
Pediococcus pentosaceus [BBZC]
104454
104381
-
Arg
TCT
[ENA]
¡û
>W1710087227
BDQH01000212
Bacillota
Ligilactobacillus acidipiscis [BDQH]
37797
37872
+
Arg
TCT
[ENA]
¡û
>W1710629992
JQBF01000002
Bacillota
Pediococcus pentosaceus [JQBF]
104658
104585
-
Arg
TCT
[ENA]
¡û
>W1710630804
JQBX01000001
Bacillota
Pediococcus stilesii [JQBX]
159325
159252
-
Arg
TCT
[ENA]
¡û
>W1710630923
JQBZ01000025
Bacillota
Ligilactobacillus ceti DSM 22408 [JQBZ]
306889
306812
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK