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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147328 (60 seq.)
>W1710805059
LJZS01000002
Gammaproteobacteria
Halomonas sp. HL-48 [LJZS]
298246
298322
+
Arg
CCG
[ENA]
¡û
>W1711221634
LXRG01000192
Gammaproteobacteria
Halomonas sp. ALS9 [LXRG]
680702
680626
-
Arg
CCG
[ENA]
¡û
>W1711434619
MINL01000001
Gammaproteobacteria
Halomonas sp. QHL1 [MINL]
2503483
2503407
-
Arg
CCG
[ENA]
¡û
>PL171000826
CP011054
Gammaproteobacteria
Halomonas sp. KO116 plasmid:unnamed2
139493
139417
-
Arg
CCG
[ENA]
¡û
>PL171001679
CP022739
Gammaproteobacteria
Halomonas ventosae NRS2HaP1 plasmid:pNRS2HaP12
139493
139417
-
Arg
CCG
[ENA]
¡û
>W131095834
AOPO01000001
Gammaproteobacteria
Halomonas titanicae BH1 [AOPO]
593410
593334
-
Arg
CCG
[ENA]
¡û
>W131174809
ARIT01000015
Gammaproteobacteria
Halomonas zhanjiangensis DSM 21076 [ARIT]
126008
126084
+
Arg
CCG
[ENA]
¡û
>WENV181233645
OFET01000023
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
298261
298337
+
Arg
CCG
[ENA]
¢þ
>WENV181234738
OFEU01002923
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
1259
1183
-
Arg
CCG
[ENA]
¢þ
>W141252173
CBRE010000064
Gammaproteobacteria
Halomonas sp. A3H3 [CBRE]
9486
9562
+
Arg
CCG
[ENA]
¡û
>WENV182548757
OJBX01000080
[OJBX] seawater metagenome; Sea water
74589
74665
+
Arg
CCG
[ENA]
¢þ
>WENV182558938
OJDN01019434
[OJDN] seawater metagenome; Sea water
743
667
-
Arg
CCG
[ENA]
¢þ
>WENV182568001
OJEP01010166
[OJEP] seawater metagenome; Sea water
1254
1178
-
Arg
CCG
[ENA]
¢þ
>WENV182575964
OJFX01000863
[OJFX] seawater metagenome; Sea water
2169
2093
-
Arg
CCG
[ENA]
¢þ
>WENV182585337
OJHH01009817
[OJHH] seawater metagenome; Sea water
1331
1407
+
Arg
CCG
[ENA]
¢þ
>WENV182591181
OJIL01000280
[OJIL] seawater metagenome; Sea water
5207
5283
+
Arg
CCG
[ENA]
¢þ
>WENV182591442
OJIO01000071
[OJIO] seawater metagenome; Sea water
74590
74666
+
Arg
CCG
[ENA]
¢þ
>W141275896
JADJ01000013
Gammaproteobacteria
Halomonas sp. 23_GOM-1509m [JADJ]
59784
59708
-
Arg
CCG
[ENA]
¡û
>WENV170014232
AXCI01002455
[AXCI] groundwater metagenome; Mt. Simon Sandstone pore water sample D5872 at 1.8km depth, Illinois-Basin Decatur Project
5543
5467
-
Arg
CCG
[ENA]
¢þ
>WENV170014271
AXCI01003904
[AXCI] groundwater metagenome; Mt. Simon Sandstone pore water sample D5872 at 1.8km depth, Illinois-Basin Decatur Project
1670
1746
+
Arg
CCG
[ENA]
¢þ
>WENV170014280
AXCI01004094
[AXCI] groundwater metagenome; Mt. Simon Sandstone pore water sample D5872 at 1.8km depth, Illinois-Basin Decatur Project
1670
1746
+
Arg
CCG
[ENA]
¢þ
>WENV170112612
CEGF01006601
[CEGF] microbial mat metagenome; grass silage
1795
1719
-
Arg
CCG
[ENA]
¢þ
>WENV170112613
CEGF01006602
[CEGF] microbial mat metagenome; grass silage
900
976
+
Arg
CCG
[ENA]
¢þ
>WENV170260463
CEQZ01047591
[CEQZ] marine metagenome genome assembly TARA_070_MES_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1094
1170
+
Arg
CCG
[ENA]
¢þ
>WENV170672206
LAZR01000031
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
195239
195315
+
Arg
CCG
[ENA]
¢þ
>WENV170675619
LDZP01000133
[LDZP] terrestrial metagenome; oil reservoir sample I1
5043
4967
-
Arg
CCG
[ENA]
¢þ
>WENV170683214
LFIK01007033
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
7557
7633
+
Arg
CCG
[ENA]
¢þ
>WENV170693103
LGOV01084983
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
2758
2682
-
Arg
CCG
[ENA]
¢þ
>WENV170699973
LGVF01693850
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
21
97
+
Arg
CCG
[ENA]
¢þ
>C191007754
AP019416
Gammaproteobacteria
Halomonas olivaria TYRC17 [AP019416]
4566189
4566113
-
Arg
CCG
-
¡û
>C191165457
CP039374
Gammaproteobacteria
Halomonas titanicae ANRCS81 [CP039374]
2020384
2020460
+
Arg
CCG
-
¡û
>W141557604
JHVH01000005
Gammaproteobacteria
Halomonas halodenitrificans DSM 735 [JHVH]
65509
65433
-
Arg
CCG
[ENA]
¡û
>W141564662
JIAY01000013
Gammaproteobacteria
Halomonas sp. 19A_GOM-1509m [JIAY]
58072
57996
-
Arg
CCG
[ENA]
¡û
>W141703449
JMMC01000012
Gammaproteobacteria
Halomonas sp. HL-48 [JMMC]
348286
348210
-
Arg
CCG
[ENA]
¡û
>W141754424
JNVS01000003
Gammaproteobacteria
Halomonas sp. KO116 [JNVS]
148207
148283
+
Arg
CCG
[ENA]
¡û
>W141754468
JNVS01000038
Gammaproteobacteria
Halomonas sp. KO116 [JNVS]
951
875
-
Arg
CCG
[ENA]
¡û
>W141818894
JQLV01000001
Gammaproteobacteria
Halomonas sp. TG39a [JQLV]
3259888
3259812
-
Arg
CCG
[ENA]
¡û
>W1910006941
BBQX01000014
Gammaproteobacteria
Halomonas sp. MBEE15 [BBQX]
5020
4944
-
Arg
CCG
[ENA]
¡û
>W1910339607
FTLE01000005
Gammaproteobacteria
Halomonas massiliensis Marseille-P2426 [FTLE]
480999
480923
-
Arg
CCG
[ENA]
¡û
>W1910377576
FUKM01000057
Gammaproteobacteria
Halomonas sp. JB380 [FUKM]
311386
311462
+
Arg
CCG
[ENA]
¡û
>W1911148561
NPEY01000006
Gammaproteobacteria
Halomonas boliviensis LC1 [NPEY]
6797
6721
-
Arg
CCG
[ENA]
¡û
>W1911203524
NRGW01000001
Gammaproteobacteria
Halomonas sp. JB37 [NRGW]
741159
741235
+
Arg
CCG
[ENA]
¡û
>W1810062649
PDOG01000004
Gammaproteobacteria
Halomonas sp. LBP4 [PDOG]
361336
361260
-
Arg
CCG
[ENA]
¡û
>W1810062679
PDOH01000014
Gammaproteobacteria
Halomonas heilongjiangensis 9·î2Æü [PDOH]
130059
129983
-
Arg
CCG
[ENA]
¡û
>W1810156462
PJBI01000037
Gammaproteobacteria
Halomonas sp. Choline-3u-9 [PJBI]
218436
218512
+
Arg
CCG
[ENA]
¡û
>W1810157207
PJBT01000182
Gammaproteobacteria
Halomonas sp. MES3-P3E [PJBT]
216
140
-
Arg
CCG
[ENA]
¡û
>W1810199932
PNRE01000019
Gammaproteobacteria
Halomonas heilongjiangensis DSM 26881 [PNRE]
154052
154128
+
Arg
CCG
[ENA]
¡û
>W1810722069
QNTU01000010
Gammaproteobacteria
Halomonas sulfidaeris SST4 [QNTU]
112946
113022
+
Arg
CCG
[ENA]
¡û
>C153001429
LN813019
Gammaproteobacteria
Halomonas sp. R57-5 [LN813019]
318363
318439
+
Arg
CCG
-
¡û
>C151075830
CP011052
Gammaproteobacteria
Halomonas sp. KO116 [CP011052]
389783
389859
+
Arg
CCG
[Ensembl]
¡û
>W1511479168
JWHY01000001
Gammaproteobacteria
Halomonas sp. KHS3 [JWHY]
47417
47341
-
Arg
CCG
[ENA]
¡û
>W11180572
AGIB01000003
Gammaproteobacteria
Halomonas sp. HAL1 [AGIB]
51810
51886
+
Arg
CCG
[ENA]
¡û
>C161109430
LT593974
Gammaproteobacteria
Halomonas sp. HL-93 [LT593974]
181702
181778
+
Arg
CCG
-
¡û
>W121016443
AGQZ01000031
Gammaproteobacteria
Halomonas boliviensis LC1 [AGQZ]
56656
56732
+
Arg
CCG
[ENA]
¡û
>W1610612251
LGEN01000060
Gammaproteobacteria
Halomonas sp. 54_146 [LGEN]
5043
4967
-
Arg
CCG
[ENA]
¡û
>W1610668916
LJZS01000002
Gammaproteobacteria
Halomonas sp. HL-48 [LJZS]
298246
298322
+
Arg
CCG
[ENA]
¡û
>W1611006103
LXRG01000192
Gammaproteobacteria
Halomonas sp. ALS9 [LXRG]
680702
680626
-
Arg
CCG
[ENA]
¡û
>W1710518766
FNEF01000050
Gammaproteobacteria
Halomonas titanicae DSM 26667 [FNEF]
543
467
-
Arg
CCG
[ENA]
¡û
>W1710628343
JPUA01000019
Gammaproteobacteria
Halomonas campaniensis [JPUA]
71180
71256
+
Arg
CCG
[ENA]
¡û
>W1710733757
LGEN01000060
Gammaproteobacteria
Halomonas sp. 54_146 [LGEN]
5043
4967
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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