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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147344 (72 seq.)
>W1710809590
LKEQ01000005
Alphaproteobacteria
Wolbachia endosymbiont of Trichogramma pretiosum [LKEQ]
4443
4367
-
Asp
GTC
[ENA]
¡û
>W1711055072
LRUH01000068
Alphaproteobacteria
Wolbachia endosymbiont of Laodelphax striatellus of Laodelphax striatella [LRUH]
3875
3799
-
Asp
GTC
[ENA]
¡û
>W1711088446
LSYX01000096
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus [LSYX]
10008
10084
+
Asp
GTC
[ENA]
¡û
>W1711088467
LSYY01000069
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus [LSYY]
3460
3384
-
Asp
GTC
[ENA]
¡û
>W1711258819
LYUV01000020
Alphaproteobacteria
Wolbachia endosymbiont of Nomada leucophthalma [LYUV]
7320
7396
+
Asp
GTC
[ENA]
¡û
>W1711258853
LYUW01000021
Alphaproteobacteria
Wolbachia endosymbiont of Nomada flava [LYUW]
7320
7396
+
Asp
GTC
[ENA]
¡û
>W1711258886
LYUX01000019
Alphaproteobacteria
Wolbachia endosymbiont of Nomada panzeri [LYUX]
7407
7483
+
Asp
GTC
[ENA]
¡û
>W1711258925
LYUY01000033
Alphaproteobacteria
Wolbachia endosymbiont of Nomada ferruginata [LYUY]
5290
5214
-
Asp
GTC
[ENA]
¡û
>W1711466321
MJMG01000005
Alphaproteobacteria
Wolbachia pipientis [MJMG]
14168
14094
-
Asp
GTC
[ENA]
¡û
>W1711745701
MUJL01000035
Alphaproteobacteria
Wolbachia pipientis wUni [MUJL]
6869
6945
+
Asp
GTC
[ENA]
¡û
>W1711745726
MUJM01000021
Alphaproteobacteria
Wolbachia pipientis wVitA [MUJM]
6862
6938
+
Asp
GTC
[ENA]
¡û
>W1712108427
NJBR01000028
Alphaproteobacteria
Wolbachia endosymbiont of Wuchereria bancrofti [NJBR]
24897
24971
+
Asp
GTC
[ENA]
¡û
>W131052835
AMZJ01000075
Alphaproteobacteria
Wolbachia endosymbiont of Diaphorina citri [AMZJ]
53972
53896
-
Asp
GTC
[ENA]
¡û
>W131242660
CAOH01000090
Alphaproteobacteria
Wolbachia pipientis wBol1-b [CAOH]
38489
38413
-
Asp
GTC
[ENA]
¡û
>W131243104
CAOU02000011
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila suzukii str. valsugana of Drosophila suzukii [CAOU]
55699
55775
+
Asp
GTC
[ENA]
¡û
>C026826
AE017196
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila melanogaster wMel [AE017196]
519457
519533
+
Asp
GTC
[Ensembl]
¡û
>C026865
AE017321
Alphaproteobacteria
Wolbachia endosymbiont strain TRS of Brugia malayi [AE017321]
1075386
1075459
+
Asp
GTC
[Ensembl]
¡û
>w016806
AAQP01000162
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila willistoni of Drosophila willistoni TSC#14030-0811.24 [AAQP]
1720
1647
-
Asp
GTC
[ENA]
¡û
>W141001043
ADHE01000073
Alphaproteobacteria
Wolbachia endosymbiont of Onchocerca volvulus [ADHE]
1241
1315
+
Asp
GTC
[ENA]
¡û
>w005410
AAGB01000076
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila ananassae [AAGB]
7
83
+
Asp
GTC
[ENA]
¡û
>W141065626
AQQE01000030
Alphaproteobacteria
Wolbachia pipientis wMelPop [AQQE]
3035
2959
-
Asp
GTC
[ENA]
¡û
>WENV181405232
OGCC01000121
[OGCC] insect metagenome; haemolymph
1202
1278
+
Asp
GTC
[ENA]
¢þ
>WENV181405278
OGCD01000014
[OGCD] insect metagenome; haemolymph
6149
6225
+
Asp
GTC
[ENA]
¢þ
>WENV181406094
OGCF01000094
[OGCF] insect metagenome; haemolymph
2398
2474
+
Asp
GTC
[ENA]
¢þ
>W141240210
CAGB01000014
Alphaproteobacteria
Wolbachia pipientis wAlbB [CAGB]
16748
16672
-
Asp
GTC
[ENA]
¡û
>C08011412
AM999887
Alphaproteobacteria
Wolbachia endosymbiont of Culex quinquefasciatus Pel wPip [AM999887]
1315211
1315138
-
Asp
GTC
[Ensembl]
¡û
>C181017569
CP015510
Alphaproteobacteria
Wolbachia endosymbiont of Folsomia candida Berlin [CP015510]
1391424
1391348
-
Asp
GTC
-
¡û
>C191074327
CP031221
Alphaproteobacteria
Wolbachia pipientis wAlbB [CP031221]
971782
971858
+
Asp
GTC
-
¡û
>C191123099
CP034333
Alphaproteobacteria
Wolbachia endosymbiont of Brugia malayi [CP034333]
407907
407981
+
Asp
GTC
-
¡û
>C191123157
CP034334
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila mauritiana wMau [CP034334]
367062
366986
-
Asp
GTC
-
¡û
>C191123191
CP034335
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila mauritiana wMau [CP034335]
367065
366989
-
Asp
GTC
-
¡û
>C191188725
CP041215
Alphaproteobacteria
Wolbachia endosymbiont of Carposina sasakii [CP041215]
1135173
1135097
-
Asp
GTC
-
¡û
>W09113862
ABZA01000002
Alphaproteobacteria
Wolbachia endosymbiont of Culex quinquefasciatus of Culex quinquefasciatus JHB [ABZA]
61130
61054
-
Asp
GTC
[ENA]
¡û
>W09121826
ACFP01000249
Alphaproteobacteria
Wolbachia endosymbiont of Muscidifurax uniraptor [ACFP]
5908
5832
-
Asp
GTC
[ENA]
¡û
>W141812273
JQAM01000016
Alphaproteobacteria
Wolbachia pipientis [JQAM]
5100
5176
+
Asp
GTC
[ENA]
¡û
>W1910213466
FMKF01000066
Alphaproteobacteria
Wolbachia endosymbiont of Bemisia tabaci [FMKF]
3011
2935
-
Asp
GTC
[ENA]
¡û
>C09111257
CP001391
Alphaproteobacteria
Wolbachia sp. wRi [CP001391]
371956
372032
+
Asp
GTC
[Ensembl]
¡û
>W1910753975
MKIF01000165
Alphaproteobacteria
Wolbachia sp. wRi [MKIF]
2561
2488
-
Asp
GTC
[ENA]
¡û
>W1910759028
MLZJ01000084
Alphaproteobacteria
Wolbachia sp. wMel_KL [MLZJ]
6905
6981
+
Asp
GTC
[ENA]
¡û
>W1910760275
MNCG01000082
Alphaproteobacteria
Wolbachia sp. wMel_AMD [MNCG]
2574
2498
-
Asp
GTC
[ENA]
¡û
>W1910794355
MRWX01000011
Alphaproteobacteria
Wolbachia pipientis wAus [MRWX]
18004
18080
+
Asp
GTC
[ENA]
¡û
>W1910802350
MSYL01000100
Alphaproteobacteria
Wolbachia sp. wRi_2 [MSYL]
2561
2488
-
Asp
GTC
[ENA]
¡û
>W1911239451
NSDR01000041
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila ananassae of Drosophila ananassae wAna_India [NSDR]
2566
2493
-
Asp
GTC
[ENA]
¡û
>W1911239498
NSDS01000072
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila ananassae of Drosophila ananassae wAna_Hawaii [NSDS]
7445
7518
+
Asp
GTC
[ENA]
¡û
>W1911239536
NSDT01000094
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila ananassae of Drosophila ananassae wAna_Indonesia [NSDT]
2566
2493
-
Asp
GTC
[ENA]
¡û
>W1911281102
NTHL01000034
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila subpulchrella of Drosophila subpulchrella wSpc [NTHL]
3038
2962
-
Asp
GTC
[ENA]
¡û
>W1911412156
NWVH01000047
Alphaproteobacteria
Wolbachia pipientis FL2016 [NWVH]
6435
6359
-
Asp
GTC
[ENA]
¡û
>W1911412178
NWVI01000006
Alphaproteobacteria
Wolbachia pipientis HN2016 [NWVI]
19143
19219
+
Asp
GTC
[ENA]
¡û
>W1911412249
NWVJ01000082
Alphaproteobacteria
Wolbachia pipientis HN2016 [NWVJ]
3233
3157
-
Asp
GTC
[ENA]
¡û
>W1911412284
NWVK01000062
Alphaproteobacteria
Wolbachia pipientis FL2016 [NWVK]
3233
3157
-
Asp
GTC
[ENA]
¡û
>W1911545105
OUNE01000030
Alphaproteobacteria
Wolbachia endosymbiont of Aleurodicus dispersus WBAD (OUNE) of Aleurodicus dispersus WBAD [OUNE]
18540
18616
+
Asp
GTC
[ENA]
¡û
>W1911545140
OUNF01000063
Alphaproteobacteria
Wolbachia endosymbiont of Aleurodicus floccissimus WBAF (OUNF) of Aleurodicus floccissimus WBAF [OUNF]
9418
9342
-
Asp
GTC
[ENA]
¡û
>W1810758331
QPIP01000005
Alphaproteobacteria
Wolbachia endosymbiont of Cylisticus convexus of Cylisticus convexus Wcon [QPIP]
8403
8327
-
Asp
GTC
[ENA]
¡û
>C151001134
AP013028
Alphaproteobacteria
Wolbachia endosymbiont of Cimex lectularius wCle [AP013028]
940742
940817
+
Asp
GTC
[Ensembl]
¡û
>C151101086
HG810405
Alphaproteobacteria
Wolbachia endosymbiont of Onchocerca volvulus str. Cameroon [HG810405]
541923
541997
+
Asp
GTC
-
¡û
>C151102204
LK055284
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila simulans wAu [LK055284]
536212
536288
+
Asp
GTC
[Ensembl]
¡û
>W1510562598
CTEH01000001
Alphaproteobacteria
Wolbachia endosymbiont of Culex molestus wPip_Mol of Culex molestus [CTEH]
264418
264342
-
Asp
GTC
[ENA]
¡û
>W1511183991
JMCJ01001059
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus of Dactylopius coccus wCoc1 [JMCJ]
4379
4455
+
Asp
GTC
[ENA]
¡û
>W1511536237
JYPC01000120
Alphaproteobacteria
Wolbachia endosymbiont of Operophtera brumata of Operophtera brumata Ob_Wba [JYPC]
17858
17934
+
Asp
GTC
[ENA]
¡û
>W11145959
AERW01000287
Alphaproteobacteria
Wolbachia endosymbiont of Nasonia vitripennis wVitB of Nasonia vitripennis [AERW]
4612
4536
-
Asp
GTC
[ENA]
¡û
>W11185721
CACK01000053
Alphaproteobacteria
Wolbachia endosymbiont of Culex pipiens molestus [CACK]
8416
8340
-
Asp
GTC
[ENA]
¡û
>C131009129
CP003883
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila simulans wNo [CP003883]
971536
971460
-
Asp
GTC
[Ensembl]
¡û
>C131009142
CP003884
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila simulans wHa [CP003884]
512714
512790
+
Asp
GTC
[Ensembl]
¡û
>C131019574
HE660029
Alphaproteobacteria
Wolbachia endosymbiont of Onchocerca ochengi wOo [HE660029]
903979
904053
+
Asp
GTC
[Ensembl]
¡û
>W1610673696
LKEQ01000005
Alphaproteobacteria
Wolbachia endosymbiont of Trichogramma pretiosum [LKEQ]
4443
4367
-
Asp
GTC
[ENA]
¡û
>W1610896118
LRUH01000068
Alphaproteobacteria
Wolbachia endosymbiont of Laodelphax striatellus of Laodelphax striatella [LRUH]
3875
3799
-
Asp
GTC
[ENA]
¡û
>W1610922985
LSYX01000096
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus [LSYX]
10008
10084
+
Asp
GTC
[ENA]
¡û
>W1610923006
LSYY01000069
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus [LSYY]
3460
3384
-
Asp
GTC
[ENA]
¡û
>W1611021084
LYUV01000020
Alphaproteobacteria
Wolbachia endosymbiont of Nomada leucophthalma [LYUV]
7320
7396
+
Asp
GTC
[ENA]
¡û
>W1611021118
LYUW01000021
Alphaproteobacteria
Wolbachia endosymbiont of Nomada flava [LYUW]
7320
7396
+
Asp
GTC
[ENA]
¡û
>W1611021151
LYUX01000019
Alphaproteobacteria
Wolbachia endosymbiont of Nomada panzeri [LYUX]
7407
7483
+
Asp
GTC
[ENA]
¡û
>W1611021190
LYUY01000033
Alphaproteobacteria
Wolbachia endosymbiont of Nomada ferruginata [LYUY]
5290
5214
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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