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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147393 (55 seq.)
>W1711170186
LWAF01000001
Thermotogota
Fervidobacterium thailandense thailandensis [LWAF]
278195
278119
-
Met
CAT
[ENA]
¡û
>W131193866
ASPL01000004
Thermotogota
Thermotogota bacterium JGI 0000106-O11 JGI 0000106-O11 [ASPL]
2754
2830
+
Met
CAT
[ENA]
¡û
>C025666
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
1362288
1362212
-
Met
CAT
-
¡û
>C025786
CP000702
Thermotogota
Thermotoga petrophila RKU-1 [CP000702]
1429981
1430057
+
Met
CAT
[Ensembl]
¡û
>w019736
AAUK01000009
Thermotogota
Fervidobacterium nodosum Rt17-B1 [AAUK]
10431
10509
+
Met
CAT
[ENA]
¡û
>WENV180014034
FPIC01033005
[FPIC] soil metagenome; Soil
80
4
-
fMet
CAT
[ENA]
¢þ
>WENV180095983
MTBK01100539
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
4387
4311
-
fMet
CAT
[ENA]
¢þ
>WENV181226138
OFDK01000086
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
2820
2744
-
fMet
CAT
[ENA]
¢þ
>WENV181285325
OFGS01000002
[OFGS] hot springs metagenome; Water and soil
170233
170157
-
fMet
CAT
[ENA]
¢þ
>WENV181408574
OGCH01005770
[OGCH] hot springs metagenome; hot springs
1074
1150
+
fMet
CAT
[ENA]
¢þ
>C08004983
CP000771
Thermotogota
Fervidobacterium nodosum Rt17-B1 [CP000771]
1049920
1049996
+
Met
CAT
[Ensembl]
¡û
>C08010899
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
1494422
1494498
+
Met
CAT
[Ensembl]
¡û
>WENV170676183
LDZR01001336
[LDZR] terrestrial metagenome; oil reservoir sample K2
79
3
-
Met
CAT
[ENA]
¢þ
>WENV170676511
LDZS01000383
[LDZS] terrestrial metagenome; oil reservoir sample K3
5018
4942
-
Met
CAT
[ENA]
¢þ
>WENV170676777
LDZS01002320
[LDZS] terrestrial metagenome; oil reservoir sample K3
11
87
+
Met
CAT
[ENA]
¢þ
>WENV170676778
LDZS01002322
[LDZS] terrestrial metagenome; oil reservoir sample K3
2130
2206
+
Met
CAT
[ENA]
¢þ
>W09106547
AAWB01000003
Thermotogota
Thermotoga petrophila RKU-1 [AAWB]
52666
52742
+
Met
CAT
[ENA]
¡û
>W09107424
ABIJ01000006
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
127276
127352
+
Met
CAT
[ENA]
¡û
>W09112210
ABXR01000007
Thermotogota
Marinitoga piezophila KA3 [ABXR]
58613
58537
-
Met
CAT
[ENA]
¡û
>C141011527
CP007013
Thermotogota
Thermotoga maritima MSB8 [CP007013]
1452962
1453038
+
Met
CAT
-
¡û
>W1910573572
JPMH01000013
Thermotogota
Fervidobacterium sp. SC_NGM5_G05 [JPMH]
29225
29149
-
Met
CAT
[ENA]
¡û
>W1910635464
LNDD01000004
Thermotogota
Thermotoga sp. SG1 [LNDD]
362688
362612
-
Met
CAT
[ENA]
¡û
>W1910635497
LNDE01000001
Thermotogota
Thermotoga sp. KOL6 [LNDE]
312212
312136
-
Met
CAT
[ENA]
¡û
>C151004276
CP003408
Thermotogota
Thermotoga sp. 2812B [CP003408]
1470861
1470937
+
Met
CAT
[Ensembl]
¡û
>C151004318
CP003409
Thermotogota
Thermotoga sp. Cell2 [CP003409]
1421875
1421951
+
Met
CAT
[Ensembl]
¡û
>C151074626
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
1352276
1352200
-
Met
CAT
[Ensembl]
¡û
>C151076980
CP011107
Thermotogota
Thermotoga maritima MSB8 [CP011107]
1362304
1362228
-
Met
CAT
[Ensembl]
¡û
>C151077026
CP011108
Thermotogota
Thermotoga maritima Tma100 [CP011108]
1362304
1362228
-
Met
CAT
[Ensembl]
¡û
>W10105830
ACXW01000002
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
189913
189837
-
Met
CAT
[ENA]
¡û
>C10113498
CP001839
Thermotogota
Thermotoga petrophila RKU-10 [CP001839]
1454232
1454308
+
Met
CAT
[Ensembl]
¡û
>W11108150
ACXW01000002
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
189913
189837
-
Met
CAT
[ENA]
¡û
>W1511355450
JRRD02000001
Thermotogota
Fervidobacterium islandicum AW-1 [JRRD]
1615644
1615568
-
Met
CAT
[ENA]
¡û
>W11180810
AGIJ01000002
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
9803
9727
-
Met
CAT
[ENA]
¡û
>C121009909
CP003260
Thermotogota
Fervidobacterium pennivorans DSM 9078 [CP003260]
1338266
1338190
-
Met
CAT
[Ensembl]
¡û
>C161034988
CP011393
Thermotogota
Fervidobacterium pennivorans DYC [CP011393]
1964189
1964113
-
Met
CAT
[Ensembl]
¡û
>C161071296
CP014334
Thermotogota
Fervidobacterium islandicum AW-1 [CP014334]
1366728
1366652
-
Met
CAT
[Ensembl]
¡û
>W121010820
AGJO01000002
Thermotogota
Fervidobacterium pennivorans DSM 9078 [AGJO]
267819
267895
+
Met
CAT
[ENA]
¡û
>W121062199
AJII01000011
Thermotogota
Thermotoga sp. EMP [AJII]
351507
351583
+
Met
CAT
[ENA]
¡û
>C131012516
CP004077
Thermotogota
Thermotoga maritima MSB8 [CP004077]
1362306
1362230
-
Met
CAT
-
¡û
>W1610540333
JSFG01000010
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
14079
14155
+
Met
CAT
[ENA]
¡û
>W1610540389
JSFH01000009
Thermotogota
Thermotoga sp. Mc24 [JSFH]
162727
162803
+
Met
CAT
[ENA]
¡û
>W1610540423
JSFI01000007
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
57566
57642
+
Met
CAT
[ENA]
¡û
>W1610540493
JSFJ01000015
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
224424
224348
-
Met
CAT
[ENA]
¡û
>W1610612929
LGFG01000088
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
79
3
-
Met
CAT
[ENA]
¡û
>W1610613167
LGFM01000189
Thermotogota
Thermotoga sp. 47_83 [LGFM]
11
87
+
Met
CAT
[ENA]
¡û
>W1610613168
LGFM01000191
Thermotogota
Thermotoga sp. 47_83 [LGFM]
2130
2206
+
Met
CAT
[ENA]
¡û
>W1710517610
FNDL01000021
Thermotogota
Fervidobacterium changbaicum [FNDL]
27728
27652
-
Met
CAT
[ENA]
¡û
>W1710593353
FRDJ01000004
Thermotogota
Fervidobacterium gondwanense DSM 13020 [FRDJ]
200118
200042
-
Met
CAT
[ENA]
¡û
>W1710643354
JSFG01000010
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
14079
14155
+
Met
CAT
[ENA]
¡û
>W1710643410
JSFH01000009
Thermotogota
Thermotoga sp. Mc24 [JSFH]
162727
162803
+
Met
CAT
[ENA]
¡û
>W1710643444
JSFI01000007
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
57566
57642
+
Met
CAT
[ENA]
¡û
>W1710643514
JSFJ01000015
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
224424
224348
-
Met
CAT
[ENA]
¡û
>W1710734211
LGFG01000088
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
79
3
-
Met
CAT
[ENA]
¡û
>W1710734374
LGFM01000189
Thermotogota
Thermotoga sp. 47_83 [LGFM]
11
87
+
Met
CAT
[ENA]
¡û
>W1710734375
LGFM01000191
Thermotogota
Thermotoga sp. 47_83 [LGFM]
2130
2206
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK