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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147422 (78 seq.)
>W1711310041
MARH01000021
Bacillota
Clostridium perfringens [MARH]
15
98
+
Leu
TAG
[ENA]
¡û
>W131044160
AMQH01000018
Bacillota
Clostridium tunisiense TJ [AMQH]
18414
18331
-
Leu
TAG
[ENA]
¡û
>W131044147
AMQH01000014
Bacillota
Clostridium tunisiense TJ [AMQH]
2849
2766
-
Leu
TAG
[ENA]
¡û
>W131044195
AMQH01000036
Bacillota
Clostridium tunisiense TJ [AMQH]
1889
1806
-
Leu
TAG
[ENA]
¡û
>W131252500
CBML010000006
Bacillota
Clostridium chauvoei JF4335 [CBML]
20787
20870
+
Leu
TAG
[ENA]
¡û
>W1712036676
NFHR01000005
Bacillota
Clostridium perfringens [NFHR]
6054
5971
-
Leu
TAG
[ENA]
¡û
>W1712036686
NFHR01000005
Bacillota
Clostridium perfringens [NFHR]
5115
5032
-
Leu
TAG
[ENA]
¡û
>C006538
CP000312
Bacillota
Clostridium perfringens SM101 [CP000312]
2451590
2451507
-
Leu
TAG
[Ensembl]
¡û
>C006548
CP000312
Bacillota
Clostridium perfringens SM101 [CP000312]
2450654
2450571
-
Leu
TAG
[Ensembl]
¡û
>WENV180411144
OBUY01000975
[OBUY] human gut metagenome; faeces
88
171
+
Leu
TAG
[ENA]
¢þ
>WENV180762386
ODHZ01120582
[ODHZ] human metagenome; G_DNA_Stool
185
102
-
Leu
TAG
[ENA]
¢þ
>WENV181219390
OFCO01000714
[OFCO] metagenome; Human gut stool
3712
3795
+
Leu
TAG
[ENA]
¢þ
>WENV181221548
OFCV01004711
[OFCV] metagenome; Human gut stool
533
616
+
Leu
TAG
[ENA]
¢þ
>WENV181225926
OFDJ01001897
[OFDJ] metagenome; Human gut stool
2317
2400
+
Leu
TAG
[ENA]
¢þ
>WENV181225984
OFDJ01003967
[OFDJ] metagenome; Human gut stool
1255
1172
-
Leu
TAG
[ENA]
¢þ
>WENV181345121
OFMK01029218
[OFMK] human gut metagenome; human gut
602
685
+
Leu
TAG
[ENA]
¢þ
>WENV181421353
OGCN01033987
[OGCN] human gut metagenome; human gut
1363
1280
-
Leu
TAG
[ENA]
¢þ
>W141144085
AWSZ01000008
Bacillota
Clostridiales bacterium oral taxon 876 oral taxon 876 str. F0540 [AWSZ]
69255
69172
-
Leu
TAG
[ENA]
¡û
>WENV181806134
OGSK01000075
[OGSK] human gut metagenome; fecal sample 2 from infant 5
27068
27151
+
Leu
TAG
[ENA]
¢þ
>WENV181806267
OGSK01000513
[OGSK] human gut metagenome; fecal sample 2 from infant 5
7170
7253
+
Leu
TAG
[ENA]
¢þ
>WENV181806759
OGSL01004866
[OGSL] human gut metagenome; fecal sample 6 from infant 5
481
564
+
Leu
TAG
[ENA]
¢þ
>WENV181808196
OGSR01000125
[OGSR] human gut metagenome; fecal sample 8 from infant 2
30492
30409
-
Leu
TAG
[ENA]
¢þ
>WENV181808230
OGSR01000285
[OGSR] human gut metagenome; fecal sample 8 from infant 2
7147
7230
+
Leu
TAG
[ENA]
¢þ
>WENV181818722
OGTT01006055
[OGTT] human gut metagenome; fecal sample 6 from infant 8
464
381
-
Leu
TAG
[ENA]
¢þ
>WENV182799666
OJTV01005712
[OJTV] human gut metagenome; human gut
484
567
+
Leu
TAG
[ENA]
¢þ
>WENV182803636
OJUM01001893
[OJUM] human gut metagenome; human gut
814
897
+
Leu
TAG
[ENA]
¢þ
>WENV182804832
OJUX01002123
[OJUX] human gut metagenome; human gut
2719
2802
+
Leu
TAG
[ENA]
¢þ
>WENV182804864
OJUX01004583
[OJUX] human gut metagenome; human gut
1342
1259
-
Leu
TAG
[ENA]
¢þ
>WENV182809456
OJWQ01002221
[OJWQ] human gut metagenome; human gut
643
560
-
Leu
TAG
[ENA]
¢þ
>WENV182813195
OJXZ01004306
[OJXZ] human gut metagenome; human gut
406
323
-
Leu
TAG
[ENA]
¢þ
>WENV182819182
OKAA01002224
[OKAA] human gut metagenome; human gut
633
550
-
Leu
TAG
[ENA]
¢þ
>WENV182823397
OKBT01000486
[OKBT] human gut metagenome; human gut
667
750
+
Leu
TAG
[ENA]
¢þ
>WENV182823407
OKBT01000486
[OKBT] human gut metagenome; human gut
1533
1616
+
Leu
TAG
[ENA]
¢þ
>WENV182830329
OKDX01007865
[OKDX] human gut metagenome; human gut
361
278
-
Leu
TAG
[ENA]
¢þ
>WENV182831442
OKEE01003128
[OKEE] human gut metagenome; human gut
660
577
-
Leu
TAG
[ENA]
¢þ
>WENV182832919
OKEP01001199
[OKEP] human gut metagenome; human gut
1131
1214
+
Leu
TAG
[ENA]
¢þ
>WENV182832969
OKEP01004906
[OKEP] human gut metagenome; human gut
762
679
-
Leu
TAG
[ENA]
¢þ
>WENV182842493
OKIE01002340
[OKIE] human gut metagenome; human gut
77
160
+
Leu
TAG
[ENA]
¢þ
>WENV182846038
OKJI01002866
[OKJI] human gut metagenome; human gut
298
381
+
Leu
TAG
[ENA]
¢þ
>WENV182862556
OKPN01000179
[OKPN] human gut metagenome; human gut
594
511
-
Leu
TAG
[ENA]
¢þ
>WENV182944844
OKVJ01002162
[OKVJ] human gut metagenome; human gut
2648
2565
-
Leu
TAG
[ENA]
¢þ
>WENV182944854
OKVJ01002162
[OKVJ] human gut metagenome; human gut
1709
1626
-
Leu
TAG
[ENA]
¢þ
>WENV182954792
OKWB01000013
[OKWB] human gut metagenome; stool
81789
81872
+
Leu
TAG
[ENA]
¢þ
>WENV182954995
OKWB01002343
[OKWB] human gut metagenome; stool
992
909
-
Leu
TAG
[ENA]
¢þ
>C181031735
CP018624
Bacillota
Clostridium chauvoei DSM 7528 [CP018624]
116907
116990
+
Leu
TAG
-
¡û
>C181031743
CP018624
Bacillota
Clostridium chauvoei DSM 7528 [CP018624]
117611
117694
+
Leu
TAG
-
¡û
>C181031799
CP018624
Bacillota
Clostridium chauvoei DSM 7528 [CP018624]
2299907
2299824
-
Leu
TAG
-
¡û
>C191012383
CP016786
Bacillota
Clostridium isatidis DSM 15098 [CP016786]
350439
350522
+
Leu
TAG
-
¡û
>C191012420
CP016786
Bacillota
Clostridium isatidis DSM 15098 [CP016786]
2499976
2499893
-
Leu
TAG
-
¡û
>C191012428
CP016786
Bacillota
Clostridium isatidis DSM 15098 [CP016786]
2499314
2499231
-
Leu
TAG
-
¡û
>C191025610
CP023671
Bacillota
Clostridium septicum DSM 7534 [CP023671]
2095503
2095586
+
Leu
TAG
-
¡û
>C191025623
CP023671
Bacillota
Clostridium septicum DSM 7534 [CP023671]
2159346
2159429
+
Leu
TAG
-
¡û
>C191025631
CP023671
Bacillota
Clostridium septicum DSM 7534 [CP023671]
2160058
2160141
+
Leu
TAG
-
¡û
>C191184292
CP040924
Bacillota
Clostridium thermarum SYSU GA15002 [CP040924]
2944375
2944292
-
Leu
TAG
-
¡û
>C191184303
CP040924
Bacillota
Clostridium thermarum SYSU GA15002 [CP040924]
2943379
2943296
-
Leu
TAG
-
¡û
>C191184314
CP040924
Bacillota
Clostridium thermarum SYSU GA15002 [CP040924]
579037
578954
-
Leu
TAG
-
¡û
>W1910693940
MDJG01000015
Bacillota
Clostridium perfringens 13/0816-B [MDJG]
86
169
+
Leu
TAG
[ENA]
¡û
>W1911491400
OAOE01000003
Bacillota
Clostridium tertium [OAOE]
189393
189310
-
Leu
TAG
[ENA]
¡û
>W1911493683
OBIQ01000010
Bacillota
Clostridium paraputrificum LH058 [OBIQ]
96172
96255
+
Leu
TAG
[ENA]
¡û
>W1911493706
OBIQ01000029
Bacillota
Clostridium paraputrificum LH058 [OBIQ]
42211
42128
-
Leu
TAG
[ENA]
¡û
>W1911493720
OBIQ01000029
Bacillota
Clostridium paraputrificum LH058 [OBIQ]
41057
40974
-
Leu
TAG
[ENA]
¡û
>W1911493834
OBJN01000004
Bacillota
Clostridium paraputrificum LH025 [OBJN]
100443
100526
+
Leu
TAG
[ENA]
¡û
>W1911493856
OBJN01000006
Bacillota
Clostridium paraputrificum LH025 [OBJN]
177138
177221
+
Leu
TAG
[ENA]
¡û
>W1911493870
OBJN01000006
Bacillota
Clostridium paraputrificum LH025 [OBJN]
178289
178372
+
Leu
TAG
[ENA]
¡û
>W1911723179
QRFP01000006
Bacillota
Clostridium perfringens 79385-1 [QRFP]
3723
3640
-
Leu
TAG
[ENA]
¡û
>W1810052533
PDCJ01000003
Bacillota
Clostridium neonatale LCDC99A005 [PDCJ]
23592
23509
-
Leu
TAG
[ENA]
¡û
>W1810052539
PDCJ01000003
Bacillota
Clostridium neonatale LCDC99A005 [PDCJ]
23057
22974
-
Leu
TAG
[ENA]
¡û
>W1810179895
PJSW01000071
Bacillota
Clostridium perfringens NAG-NE1 [PJSW]
5930
5847
-
Leu
TAG
[ENA]
¡û
>W1810179905
PJSW01000071
Bacillota
Clostridium perfringens NAG-NE1 [PJSW]
4991
4908
-
Leu
TAG
[ENA]
¡û
>W1810180153
PJSZ01000030
Bacillota
Clostridium perfringens GNP-1 [PJSZ]
66
149
+
Leu
TAG
[ENA]
¡û
>W1810180161
PJSZ01000089
Bacillota
Clostridium perfringens GNP-1 [PJSZ]
566
483
-
Leu
TAG
[ENA]
¡û
>W1810180385
PJTC01000004
Bacillota
Clostridium perfringens EHE-NE7 [PJTC]
168155
168238
+
Leu
TAG
[ENA]
¡û
>W1810180539
PJTE01000007
Bacillota
Clostridium perfringens 98.78718-2 [PJTE]
6479
6396
-
Leu
TAG
[ENA]
¡û
>W1810604834
QGMT01000006
Bacillota
Clostridium paraputrificum Gcol.A11 [QGMT]
104159
104242
+
Leu
TAG
[ENA]
¡û
>W1810604866
QGMT01000022
Bacillota
Clostridium paraputrificum Gcol.A11 [QGMT]
2439
2356
-
Leu
TAG
[ENA]
¡û
>W1810604880
QGMT01000022
Bacillota
Clostridium paraputrificum Gcol.A11 [QGMT]
1285
1202
-
Leu
TAG
[ENA]
¡û
>W1610104339
CZBQ01000013
Bacillota
Clostridium paraputrificum [CZBQ]
43533
43450
-
Leu
TAG
[ENA]
¡û
>W1710107043
CZBQ01000013
Bacillota
Clostridium paraputrificum [CZBQ]
43533
43450
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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