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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147506 (51 seq.)
>W1711326623
MBFM01000004
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
418801
418877
+
Met
CAT
[ENA]
¡û
>W1711718072
MTHD01000003
Betaproteobacteria
Azonexus hydrophilus [MTHD]
80458
80534
+
Met
CAT
[ENA]
¡û
>W131050808
AMXC01000003
Betaproteobacteria
Thauera sp. 63 [AMXC]
170188
170112
-
Met
CAT
[ENA]
¡û
>W131050891
AMXD01000151
Betaproteobacteria
Thauera aminoaromatica S2 [AMXD]
5090
5166
+
Met
CAT
[ENA]
¡û
>W131050930
AMXE01000018
Betaproteobacteria
Thauera linaloolentis 47Lol = DSM 12138 [AMXE]
7614
7538
-
Met
CAT
[ENA]
¡û
>W131050972
AMXF01000050
Betaproteobacteria
Thauera phenylacetica B4P [AMXF]
5090
5166
+
Met
CAT
[ENA]
¡û
>W131176288
ARJX01000046
Betaproteobacteria
Aromatoleum toluclasticum ATCC 700605 [ARJX]
365501
365577
+
Met
CAT
[ENA]
¡û
>C001336
CR555306
Betaproteobacteria
Aromatoleum aromaticum EbN1 [CR555306]
792356
792432
+
Met
CAT
[Ensembl]
¡û
>C171085199
CP018839
Betaproteobacteria
Thauera chlorobenzoica 3CB1 [CP018839]
609208
609132
-
Met
CAT
-
¡û
>C171116322
CP021138
Betaproteobacteria
Sulfuriferula sp. AH1 [CP021138]
55397
55321
-
Met
CAT
-
¡û
>WENV180285573
OBID01535184
[OBID] metagenome; sludge
156
80
-
Met
CAT
[ENA]
¢þ
>WENV180296605
OBJA01001138
[OBJA] soil metagenome; sediment, water from around vicinity
15995
16071
+
Met
CAT
[ENA]
¢þ
>WENV180297551
OBJA01044122
[OBJA] soil metagenome; sediment, water from around vicinity
834
910
+
Met
CAT
[ENA]
¢þ
>WENV180346347
OBLN01068242
[OBLN] sediment metagenome; sediment
94
170
+
Met
CAT
[ENA]
¢þ
>W141078530
ATJV01000059
Betaproteobacteria
Thauera terpenica 58Eu [ATJV]
220279
220355
+
Met
CAT
[ENA]
¡û
>WENV181189927
OEOF01330056
[OEOF] activated sludge metagenome; Activated Sludge
143
67
-
Met
CAT
[ENA]
¢þ
>WENV181731398
OGQD01000667
[OGQD] human gut metagenome; faeces
9957
10033
+
Met
CAT
[ENA]
¢þ
>W08008021
ABKT01000049
Betaproteobacteria
Thauera sp. MZ1T [ABKT] MZ1T [ABKT]
14018
14094
+
Met
CAT
[ENA]
¡û
>WENV170000067
AERA01005011
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
249
173
-
Met
CAT
[ENA]
¢þ
>WENV170009496
APMI01000423
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
33305
33229
-
Met
CAT
[ENA]
¢þ
>WENV170009982
APMI01006374
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
376
452
+
Met
CAT
[ENA]
¢þ
>WENV170010897
APMI01034007
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1579
1655
+
Met
CAT
[ENA]
¢þ
>WENV170011237
APMI01051627
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
114
38
-
Met
CAT
[ENA]
¢þ
>WENV170561106
CZCA01002940
[CZCA] anaerobic digester metagenome; anaerobic digester
5280
5356
+
Met
CAT
[ENA]
¢þ
>WENV170639381
JFJP01002228
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
19969
19893
-
Met
CAT
[ENA]
¢þ
>WENV170652598
JRYH01007989
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
2567
2643
+
Met
CAT
[ENA]
¢þ
>WENV170975172
MTKY01095345
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
181
105
-
Met
CAT
[ENA]
¢þ
>C181121218
CP025682
Betaproteobacteria
Pseudazoarcus pumilus SY39 [CP025682]
1220126
1220050
-
Met
CAT
-
¡û
>C181164206
CP028339
Betaproteobacteria
Thauera aromatica K172 [CP028339]
615364
615288
-
Met
CAT
-
¡û
>C191022921
CP022958
Betaproteobacteria
Azoarcus sp. DD4 [CP022958]
1005632
1005556
-
Met
CAT
-
¡û
>W141561724
JHYR01000010
Betaproteobacteria
Thauera linaloolentis 47Lol = DSM 12138 [JHYR]
23823
23747
-
Met
CAT
[ENA]
¡û
>W1910126449
BGOW01000050
Betaproteobacteria
Sulfuriferula multivorans TTN [BGOW]
45733
45809
+
Met
CAT
[ENA]
¡û
>W1910128295
BHGL01000007
Betaproteobacteria
Sulfuriferula thiophila mst6 [BHGL]
511994
511918
-
Met
CAT
[ENA]
¡û
>W1910183583
BJNV01000056
Betaproteobacteria
Zoogloea ramigera NBRC 15342 [BJNV]
26338
26414
+
Met
CAT
[ENA]
¡û
>W1910828052
MWUM01000002
Betaproteobacteria
Zoogloea sp. LCSB751 [MWUM]
237697
237621
-
Met
CAT
[ENA]
¡û
>W1911114348
NOIH01000003
Betaproteobacteria
Thauera propionica KNDSS-Mac4 [NOIH]
144083
144159
+
Met
CAT
[ENA]
¡û
>SRA1002236
SRR001308.322908
Metagenomic characterization of a wastewater treatment plant (SRP000180)
185
260
+
Met
CAT
[SRA]
>W1810195612
PKRR01000006
Betaproteobacteria
Uliginosibacterium sp. TH139 [PKRR]
195161
195237
+
Met
CAT
[ENA]
¡û
>W1810444911
PZKC01000005
Betaproteobacteria
Pseudothauera lacus D20 [PZKC]
14287
14211
-
Met
CAT
[ENA]
¡û
>C151076220
CP011072
Betaproteobacteria
Azoarcus sp. CIB [CP011072]
724826
724750
-
Met
CAT
-
¡û
>C10113225
CP001281
Betaproteobacteria
Thauera aminoaromatica MZ1T [CP001281]
956785
956709
-
Met
CAT
[Ensembl]
¡û
>WENV11100425
AERA01005011
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
249
173
-
Met
CAT
[ENA]
¡û
>W1511398304
JTDM01000019
Betaproteobacteria
Thauera sp. SWB20 [JTDM]
280849
280773
-
Met
CAT
[ENA]
¡û
>W1511580980
LARU01000002
Betaproteobacteria
Azoarcus sp. PA01 [LARU]
798377
798453
+
Met
CAT
[ENA]
¡û
>W1511686481
LFRJ01000015
Betaproteobacteria
Thauera humireducens SgZ-1 [LFRJ]
1316217
1316141
-
Met
CAT
[ENA]
¡û
>W11185898
CACR01001444
Betaproteobacteria
Thauera selenatis AX [CACR]
13635
13559
-
Met
CAT
[ENA]
¡û
>C161075107
CP014646
Betaproteobacteria
Thauera humireducens SgZ-1 [CP014646]
3861471
3861395
-
Met
CAT
[Ensembl]
¡û
>W1610042908
BAZL01000183
Betaproteobacteria
Thauera sp. DNT-1 [BAZL]
3510
3586
+
Met
CAT
[ENA]
¡û
>W1611063359
MBFM01000004
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
418801
418877
+
Met
CAT
[ENA]
¡û
>W1710040068
BAZL01000183
Betaproteobacteria
Thauera sp. DNT-1 [BAZL]
3510
3586
+
Met
CAT
[ENA]
¡û
>W1710539452
FNVJ01000005
Betaproteobacteria
Thauera chlorobenzoica [FNVJ]
190354
190430
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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