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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147567 (26 seq.)
>A171000086
AP011952
Euryarchaeota
Methanothermobacter sp. CaT2 [AP011952]
685733
685807
+
Ala
GGC
-
¡û
>A171000895
CP001710
Euryarchaeota
Methanothermobacter marburgensis str. Marburg [CP001710]
1088631
1088704
+
Ala
GGC
-
¡û
>A171001821
CP002278
Euryarchaeota
Methanothermus fervidus DSM 2088 [CP002278]
388319
388244
-
Ala
GGC
-
¡û
>A171003991
CP006933
Euryarchaeota
Methanobacterium formicicum BRM9 [CP006933]
1801262
1801335
+
Ala
GGC
-
¡û
>A171007336
HG425166
Euryarchaeota
Methanobacterium sp. MB1 [HG425166]
515501
515428
-
Ala
GGC
-
¡û
>A171007367
LN515531
Euryarchaeota
Methanobacterium formicicum [LN515531]
2416395
2416468
+
Ala
GGC
-
¡û
>A171007423
LN734822
Euryarchaeota
Methanobacterium formicicum [LN734822]
617890
617817
-
Ala
GGC
-
¡û
>A171007698
LT608329
Euryarchaeota
Methanothermobacter wolfeii [LT608329]
1078434
1078507
+
Ala
GGC
-
¡û
>WENV180036583
FVAA010188901
[FVAA] soil metagenome; Soil
547
621
+
Ala
GGC
[ENA]
¢þ
>WENV181229634
OFEK01000013
[OFEK] activated sludge metagenome; Anaerobic digester
228989
229062
+
Ala
GGC
[ENA]
¢þ
>WENV181229986
OFEK01000159
[OFEK] activated sludge metagenome; Anaerobic digester
83483
83409
-
Ala
GGC
[ENA]
¢þ
>At1649
AE000666
Euryarchaeota
Methanothermobacter thermautotrophicus str. Delta H [AE000666]
708805
708878
+
Ala
GGC
[Ensembl]
¡û
>WENV170670961
LAHU01006430
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
2611
2684
+
Ala
GGC
[ENA]
¢þ
>WENV170675902
LDZQ01001209
[LDZQ] terrestrial metagenome; oil reservoir sample I2
10221
10145
-
Ala
GGC
[ENA]
¢þ
>WENV170676685
LDZS01001902
[LDZS] terrestrial metagenome; oil reservoir sample K3
27645
27719
+
Ala
GGC
[ENA]
¢þ
>WENV170677327
LDZT01004962
[LDZT] terrestrial metagenome; oil reservoir sample SB1
6225
6152
-
Ala
GGC
[ENA]
¢þ
>WENV170685716
LFRM01105401
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
60
133
+
Ala
GGC
[ENA]
¢þ
>WENV170726344
LSQX01376300
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
888
961
+
Ala
GGC
[ENA]
¢þ
>W1911690469
QLOE01000011
Euryarchaeota
Methanothermobacter tenebrarum MCM B 1447 [QLOE]
28811
28737
-
Ala
GGC
[ENA]
¡û
>W1911722788
QREL01000001
Euryarchaeota
Methanothermobacter defluvii DSM 7466 [QREL]
542292
542218
-
Ala
GGC
[ENA]
¡û
>SRA1041128
SRR035091.201259
454 Sequencing (SRP001812)
477
404
-
Ala
GGC
[SRA]
>W1610006232
AMGN01000025
Euryarchaeota
Methanobacterium sp. Maddingley MBC34 [AMGN]
54798
54874
+
Ala
GGC
[ENA]
¡û
>W1610011029
AMPO01000009
Euryarchaeota
Methanobacterium formicicum DSM 3637 [AMPO]
12611
12684
+
Ala
GGC
[ENA]
¡û
>W1610049144
BBES01000003
Euryarchaeota
Methanobacterium formicicum JCM 10132 [BBES]
28921
28848
-
Ala
GGC
[ENA]
¡û
>W1610612481
LGEU01000023
Euryarchaeota
Methanobacteriaceae archaeon 41_258 [LGEU]
10221
10145
-
Ala
GGC
[ENA]
¡û
>W1610613881
LGGL01000069
Euryarchaeota
Methanobacterium sp. 42_16 [LGGL]
6225
6152
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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