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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147569 (18 seq.)
>A171002245
CP002772
Euryarchaeota
Methanobacterium paludis SWAN1 [CP002772]
1160151
1160224
+
Thr
CGT
-
¡û
>A171003987
CP006933
Euryarchaeota
Methanobacterium formicicum BRM9 [CP006933]
1451776
1451849
+
Thr
CGT
-
¡û
>A171007311
HG425166
Euryarchaeota
Methanobacterium sp. MB1 [HG425166]
1184576
1184649
+
Thr
CGT
-
¡û
>A171007363
LN515531
Euryarchaeota
Methanobacterium formicicum [LN515531]
2129436
2129509
+
Thr
CGT
-
¡û
>A171007419
LN734822
Euryarchaeota
Methanobacterium formicicum [LN734822]
922916
922843
-
Thr
CGT
-
¡û
>A171007660
LT607756
Euryarchaeota
Methanobacterium congolense [LT607756]
1142518
1142591
+
Thr
CGT
-
¡û
>WENV180315311
OBKH01063693
[OBKH] soil metagenome; rice field; elevated CO2 plus elevated temperature
158
83
-
Thr
CGT
[ENA]
¢þ
>WENV181229819
OFEK01000077
[OFEK] activated sludge metagenome; Anaerobic digester
12930
13003
+
Thr
CGT
[ENA]
¢þ
>WENV170021465
BBPF01012988
[BBPF] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
3062
2989
-
Thr
CGT
[ENA]
¢þ
>WENV170660374
JXWT01086332
[JXWT] soil metagenome; rice field; elevated CO2 plus elevated temperature
286
361
+
Thr
CGT
[ENA]
¢þ
>WENV170671364
LAHU01043031
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
2132
2207
+
Thr
CGT
[ENA]
¢þ
>WENV170677311
LDZT01004911
[LDZT] terrestrial metagenome; oil reservoir sample SB1
18765
18689
-
Thr
CGT
[ENA]
¢þ
>WENV170977975
MTKZ01037359
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
845
918
+
Thr
CGT
[ENA]
¢þ
>W1910575113
JQLY01000001
Euryarchaeota
Methanobacterium sp. SMA-27 [JQLY]
1313871
1313797
-
Thr
CGT
[ENA]
¡û
>W1610006234
AMGN01000027
Euryarchaeota
Methanobacterium sp. Maddingley MBC34 [AMGN]
54010
54086
+
Thr
CGT
[ENA]
¡û
>W1610011034
AMPO01000010
Euryarchaeota
Methanobacterium formicicum DSM 3637 [AMPO]
25746
25673
-
Thr
CGT
[ENA]
¡û
>W1610049148
BBES01000005
Euryarchaeota
Methanobacterium formicicum JCM 10132 [BBES]
111974
112050
+
Thr
CGT
[ENA]
¡û
>W1610613865
LGGL01000018
Euryarchaeota
Methanobacterium sp. 42_16 [LGGL]
18765
18689
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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