This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147572 (18 seq.)
>A171002239
CP002772
Euryarchaeota
Methanobacterium paludis SWAN1 [CP002772]
262140
262213
+
Lys
TTT
-
¡û
>A171004005
CP006933
Euryarchaeota
Methanobacterium formicicum BRM9 [CP006933]
2131657
2131584
-
Lys
TTT
-
¡û
>A171004023
CP006933
Euryarchaeota
Methanobacterium formicicum BRM9 [CP006933]
328070
327996
-
Lys
TTT
-
¡û
>A171007349
LN515531
Euryarchaeota
Methanobacterium formicicum [LN515531]
976158
976232
+
Lys
TTT
-
¡û
>A171007359
LN515531
Euryarchaeota
Methanobacterium formicicum [LN515531]
1604127
1604200
+
Lys
TTT
-
¡û
>A171007390
LN734822
Euryarchaeota
Methanobacterium formicicum [LN734822]
261160
261233
+
Lys
TTT
-
¡û
>A171007401
LN734822
Euryarchaeota
Methanobacterium formicicum [LN734822]
2107926
2108000
+
Lys
TTT
-
¡û
>A171007651
LT607756
Euryarchaeota
Methanobacterium congolense [LT607756]
266597
266670
+
Lys
TTT
-
¡û
>WENV180654221
OCVV010292256
[OCVV] gut metagenome; gut
304
378
+
Lys
TTT
[ENA]
¢þ
>WENV180654224
OCVV010292256
[OCVV] gut metagenome; gut
304
378
+
Lys
TTT
[ENA]
¢þ
>WENV180656727
OCVV010590465
[OCVV] gut metagenome; gut
901
827
-
Lys
TTT
[ENA]
¢þ
>WENV180656728
OCVV010590465
[OCVV] gut metagenome; gut
743
669
-
Lys
TTT
[ENA]
¢þ
>WENV170677304
LDZT01004896
[LDZT] terrestrial metagenome; oil reservoir sample SB1
14170
14097
-
Lys
TTT
[ENA]
¢þ
>WENV170678222
LDZT01012410
[LDZT] terrestrial metagenome; oil reservoir sample SB1
2602
2529
-
Lys
TTT
[ENA]
¢þ
>W1610011011
AMPO01000003
Euryarchaeota
Methanobacterium formicicum DSM 3637 [AMPO]
59335
59408
+
Lys
TTT
[ENA]
¡û
>W1610011028
AMPO01000008
Euryarchaeota
Methanobacterium formicicum DSM 3637 [AMPO]
36345
36272
-
Lys
TTT
[ENA]
¡û
>W1610049157
BBES01000007
Euryarchaeota
Methanobacterium formicicum JCM 10132 [BBES]
107234
107308
+
Lys
TTT
[ENA]
¡û
>W1610613858
LGGL01000003
Euryarchaeota
Methanobacterium sp. 42_16 [LGGL]
14170
14097
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK