This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147625 (29 seq.)
>W1710881442
LMTB01000083
Actinomycetota
Dietzia timorensis [LMTB]
20664
20738
+
Leu
TAA
[ENA]
¡û
>W1711081620
LSSV01000019
Actinomycetota
Dietzia sp. 111N12-1 [LSSV]
27539
27615
+
Leu
TAA
[ENA]
¡û
>W1711082308
LSTT01000346
Actinomycetota
Dietzia cinnamea [LSTT]
4959
5035
+
Leu
TAA
[ENA]
¡û
>W1711139721
LVFF01000007
Actinomycetota
Dietzia maris [LVFF]
41741
41815
+
Leu
TAA
[ENA]
¡û
>W1711187614
LWPP01000524
Actinomycetota
Dietzia sp. HMSC21D01 [LWPP]
16706
16630
-
Leu
TAA
[ENA]
¡û
>W1711351246
MDCG01000392
Actinomycetota
Dietzia alimentaria [MDCG]
11277
11201
-
Leu
TAA
[ENA]
¡û
>C171044559
CP015961
Actinomycetota
Dietzia timorensis ID05-A0528 [CP015961]
2345081
2345007
-
Leu
TAA
-
¡û
>W131099124
AOSR01000066
Actinomycetota
Dietzia sp. UCD-THP [AOSR]
26897
26971
+
Leu
TAA
[ENA]
¡û
>WENV181171007
OEIV010126253
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
376
300
-
Leu
TAA
[ENA]
¢þ
>C181017362
CP015449
Actinomycetota
Dietzia lutea YIM 80766 [CP015449]
2342808
2342734
-
Leu
TAA
-
¡û
>C181017410
CP015453
Actinomycetota
Dietzia psychralcaliphila ILA-1 [CP015453]
2435235
2435161
-
Leu
TAA
-
¡û
>C181107062
CP024869
Actinomycetota
Dietzia sp. JS16-p6b [CP024869]
2378386
2378312
-
Leu
TAA
-
¡û
>C181148348
CP027238
Actinomycetota
Dietzia sp. oral taxon 368 W5195 [CP027238]
135919
135845
-
Leu
TAA
-
¡û
>W1911279031
NTGA01000037
Actinomycetota
Dietzia natronolimnaea S-XJ-1 [NTGA]
18147
18073
-
Leu
TAA
[ENA]
¡û
>W1911422519
NXEI01000001
Actinomycetota
Dietzia sp. WMMA184 [NXEI]
9779
9853
+
Leu
TAA
[ENA]
¡û
>W1911422542
NXEI01000001
Actinomycetota
Dietzia sp. WMMA184 [NXEI]
3873501
3873575
+
Leu
TAA
[ENA]
¡û
>W1810463965
PZZY01000009
Actinomycetota
Dietzia psychralcaliphila DSM 44820 [PZZY]
17658
17732
+
Leu
TAA
[ENA]
¡û
>W1810580883
QETM01000066
Actinomycetota
Dietzia maris AMT [QETM]
5145
5221
+
Leu
TAA
[ENA]
¡û
>W1810722023
QNTT01000065
Actinomycetota
Dietzia maris SST1 [QNTT]
13605
13529
-
Leu
TAA
[ENA]
¡û
>W11139501
AEKG01000044
Actinomycetota
Dietzia cinnamea P4 [AEKG]
7871
7797
-
Leu
TAA
[ENA]
¡û
>W11178787
AGFF01000027
Actinomycetota
Dietzia alimentaria 72 [AGFF]
60893
60969
+
Leu
TAA
[ENA]
¡û
>W1610069387
BCSL01000005
Actinomycetota
Dietzia papillomatosis NBRC 105045 [BCSL]
133446
133520
+
Leu
TAA
[ENA]
¡û
>W1610069932
BCSW01000090
Actinomycetota
Dietzia cinnamea NBRC 102147 [BCSW]
4721
4795
+
Leu
TAA
[ENA]
¡û
>W1610743788
LMTB01000083
Actinomycetota
Dietzia timorensis [LMTB]
20664
20738
+
Leu
TAA
[ENA]
¡û
>W1610920455
LSSV01000019
Actinomycetota
Dietzia sp. 111N12-1 [LSSV]
27539
27615
+
Leu
TAA
[ENA]
¡û
>W1610921093
LSTT01000346
Actinomycetota
Dietzia cinnamea [LSTT]
4959
5035
+
Leu
TAA
[ENA]
¡û
>W1610950729
LVFF01000007
Actinomycetota
Dietzia maris [LVFF]
41741
41815
+
Leu
TAA
[ENA]
¡û
>W1710066760
BCSL01000005
Actinomycetota
Dietzia papillomatosis NBRC 105045 [BCSL]
133446
133520
+
Leu
TAA
[ENA]
¡û
>W1710067305
BCSW01000090
Actinomycetota
Dietzia cinnamea NBRC 102147 [BCSW]
4721
4795
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK