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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147692 (77 seq.)
>W1711187740
LWPS01000119
Bacillota
Clostridium sp. HMSC19A10 [LWPS]
15473
15397
-
Arg
TCG
[ENA]
¡û
>W131001760
AGYK01000020
Bacillota
Clostridium butyricum 60E.3 [AGYK]
125
201
+
Arg
TCG
[ENA]
¡û
>W131110777
APKZ01000039
Bacillota
Clostridium butyricum DKU-01 [APKZ]
20866
20790
-
Arg
TCG
[ENA]
¡û
>W131156831
AQQF01000183
Bacillota
Clostridium butyricum DSM 10702 [AQQF]
15515
15439
-
Arg
TCG
[ENA]
¡û
>W131232815
AUJN01000031
Bacillota
Clostridium butyricum AGR2140 [AUJN]
19404
19328
-
Arg
TCG
[ENA]
¡û
>C171021747
CP013239
Bacillota
Clostridium butyricum CDC_51208 [CP013239]
3804375
3804299
-
Arg
TCG
-
¡û
>C171047557
CP016332
Bacillota
Clostridium butyricum TK520 [CP016332, CP016333]
415891
415967
+
Arg
TCG
-
¡û
>WENV180124227
OASX01004074
[OASX] human gut metagenome; faeces
3686
3610
-
Arg
TCG
[ENA]
¢þ
>WENV180129352
OATC01001526
[OATC] human gut metagenome; faeces
116
192
+
Arg
TCG
[ENA]
¢þ
>WENV180153227
OAUR01012031
[OAUR] human gut metagenome; faeces
96
172
+
Arg
TCG
[ENA]
¢þ
>WENV180278413
OBHX01003928
[OBHX] metagenome; feces
765
841
+
Arg
TCG
[ENA]
¢þ
>WENV180333632
OBLF01001380
[OBLF] metagenome; feces
660
736
+
Arg
TCG
[ENA]
¢þ
>WENV180348761
OBLO01011510
[OBLO] metagenome; feces
3740
3664
-
Arg
TCG
[ENA]
¢þ
>WENV180413531
OBVB01004057
[OBVB] human gut metagenome; faeces
719
795
+
Arg
TCG
[ENA]
¢þ
>WENV180444518
OBWZ01028366
[OBWZ] human gut metagenome; faeces
147
71
-
Arg
TCG
[ENA]
¢þ
>WENV180504967
OCAO01000317
[OCAO] human gut metagenome; faeces
17031
17107
+
Arg
TCG
[ENA]
¢þ
>W08001333
ABDT01000074
Bacillota
Clostridium butyricum 5521 [ABDT]
1204
1280
+
Arg
TCG
[ENA]
¡û
>WENV181555269
OGIT01000541
[OGIT] metagenome; Human gut stool
15476
15400
-
Arg
TCG
[ENA]
¢þ
>WENV181798429
OGRV01000249
[OGRV] human gut metagenome; fecal sample 3 from infant 4
366
442
+
Arg
TCG
[ENA]
¢þ
>WENV181798930
OGRX01002542
[OGRX] human gut metagenome; fecal sample 2 from infant 8
1170
1094
-
Arg
TCG
[ENA]
¢þ
>WENV181801470
OGSB01000350
[OGSB] human gut metagenome; fecal sample 5 from infant 3
19304
19228
-
Arg
TCG
[ENA]
¢þ
>WENV181802011
OGSC01001070
[OGSC] human gut metagenome; fecal sample 8 from infant 5
364
440
+
Arg
TCG
[ENA]
¢þ
>WENV181805135
OGSH01000864
[OGSH] human gut metagenome; fecal sample 5 from infant 6
368
444
+
Arg
TCG
[ENA]
¢þ
>WENV181805414
OGSI01000717
[OGSI] human gut metagenome; fecal sample 4 from infant 8
98
174
+
Arg
TCG
[ENA]
¢þ
>WENV181805897
OGSJ01001251
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
97
173
+
Arg
TCG
[ENA]
¢þ
>WENV181807145
OGSN01005976
[OGSN] human gut metagenome; fecal sample 7 from infant 8
373
449
+
Arg
TCG
[ENA]
¢þ
>WENV181807860
OGSQ01000428
[OGSQ] human gut metagenome; fecal sample 7 from infant 4
366
442
+
Arg
TCG
[ENA]
¢þ
>WENV181809656
OGST01001039
[OGST] human gut metagenome; fecal sample 7 from infant 6
368
444
+
Arg
TCG
[ENA]
¢þ
>WENV181810632
OGSV01000523
[OGSV] human gut metagenome; fecal sample 4 from infant 3
364
440
+
Arg
TCG
[ENA]
¢þ
>WENV181811380
OGSY01001202
[OGSY] human gut metagenome; fecal sample 5 from infant 8
364
440
+
Arg
TCG
[ENA]
¢þ
>WENV181811743
OGSZ01000959
[OGSZ] human gut metagenome; fecal sample 3 from infant 8
364
440
+
Arg
TCG
[ENA]
¢þ
>WENV181813816
OGTD01002557
[OGTD] human gut metagenome; fecal sample 1 from infant 3
102
178
+
Arg
TCG
[ENA]
¢þ
>WENV181814064
OGTE01003417
[OGTE] human gut metagenome; fecal sample 2 from infant 3
621
697
+
Arg
TCG
[ENA]
¢þ
>WENV181814484
OGTG01000233
[OGTG] human gut metagenome; fecal sample 1 from infant 4
364
440
+
Arg
TCG
[ENA]
¢þ
>WENV181815067
OGTI01000414
[OGTI] human gut metagenome; fecal sample 5 from infant 1
124
200
+
Arg
TCG
[ENA]
¢þ
>WENV181817665
OGTN01002610
[OGTN] human gut metagenome; fecal sample 5 from infant 4
364
440
+
Arg
TCG
[ENA]
¢þ
>WENV181818338
OGTS01000271
[OGTS] human gut metagenome; fecal sample 4 from infant 4
191
267
+
Arg
TCG
[ENA]
¢þ
>WENV181818647
OGTT01000762
[OGTT] human gut metagenome; fecal sample 6 from infant 8
368
444
+
Arg
TCG
[ENA]
¢þ
>WENV181818916
OGTU01000228
[OGTU] human gut metagenome; fecal sample 6 from infant 4
364
440
+
Arg
TCG
[ENA]
¢þ
>WENV181823008
OGUH01002823
[OGUH] human gut metagenome; fecal sample 3 from infant 3
584
660
+
Arg
TCG
[ENA]
¢þ
>W141206244
AZLX01000072
Bacillota
Clostridium butyricum DORA_1 [AZLX]
333
257
-
Arg
TCG
[ENA]
¡û
>WENV182601909
OJJJ01001505
[OJJJ] metagenome; faeces
2037
1961
-
Arg
TCG
[ENA]
¢þ
>W141258984
CBYK010000002
Bacillota
Clostridium butyricum [CBYK]
578392
578316
-
Arg
TCG
[ENA]
¡û
>WENV182617489
OJKD01016542
[OJKD] metagenome; faeces
238
314
+
Arg
TCG
[ENA]
¢þ
>WENV182835070
OKFJ01005409
[OKFJ] human gut metagenome; human gut
117
193
+
Arg
TCG
[ENA]
¢þ
>WENV182848036
OKKE01006077
[OKKE] human gut metagenome; human gut
375
451
+
Arg
TCG
[ENA]
¢þ
>WENV182944551
OKVJ01000216
[OKVJ] human gut metagenome; human gut
11600
11676
+
Arg
TCG
[ENA]
¢þ
>WENV182952937
OKVX01000695
[OKVX] human gut metagenome; human gut
1160
1084
-
Arg
TCG
[ENA]
¢þ
>C08002628
CP001056
Bacillota
Clostridium botulinum B str. Eklund 17B [NRP] [CP001056]
433125
433201
+
Arg
TCG
[Ensembl]
¡û
>WENV183780943
PPYF01188409
[PPYF] human gut metagenome; stool from patient with Crohn's disease
15276
15200
-
Arg
TCG
[ENA]
¢þ
>C191171175
CP039702
Bacillota
Clostridium butyricum [CP039702]
474696
474772
+
Arg
TCG
-
¡û
>C191171301
CP039705
Bacillota
Clostridium butyricum 4-1 [CP039705]
2222164
2222240
+
Arg
TCG
-
¡û
>W09132847
ACOM01000004
Bacillota
Clostridium butyricum E4 str. BoNT E BL5262 [ACOM]
470993
470917
-
Arg
TCG
[ENA]
¡û
>W1910638000
LRDH01000165
Bacillota
Clostridium butyricum 300064 [LRDH]
364
440
+
Arg
TCG
[ENA]
¡û
>W1810052502
PDCI01000038
Bacillota
Clostridium neonatale LCDC99A006 [PDCI]
38301
38377
+
Arg
TCG
[ENA]
¡û
>W1810052542
PDCJ01000003
Bacillota
Clostridium neonatale LCDC99A005 [PDCJ]
22731
22655
-
Arg
TCG
[ENA]
¡û
>W1810250541
PQCS01000073
Bacillota
Clostridium sp. 3-3 [PQCS]
136
212
+
Arg
TCG
[ENA]
¡û
>W1810805979
QRUG01000045
Bacillota
Clostridium butyricum AF25-25 [QRUG]
310
386
+
Arg
TCG
[ENA]
¡û
>W1511350244
JRMA01000084
Bacillota
Clostridium butyricum INCQS635 [JRMA]
10477
10401
-
Arg
TCG
[ENA]
¡û
>W1511501408
JXBT01000001
Bacillota
Clostridium butyricum HM-68 [JXBT]
3369766
3369690
-
Arg
TCG
[ENA]
¡û
>W1511554774
JZWE01000119
Bacillota
Clostridium sp. IBUN22A [JZWE]
444
520
+
Arg
TCG
[ENA]
¡û
>W1511554807
JZWF01000020
Bacillota
Clostridium sp. IBUN125C [JZWF]
388
464
+
Arg
TCG
[ENA]
¡û
>W1511554873
JZWG01000073
Bacillota
Clostridium sp. IBUN13A [JZWG]
298
374
+
Arg
TCG
[ENA]
¡û
>W1511554961
JZWH01000051
Bacillota
Clostridium sp. IBUN62F [JZWH]
304
380
+
Arg
TCG
[ENA]
¡û
>C161054142
CP013252
Bacillota
Clostridium butyricum KNU-L09 [CP013252, CP013489]
726651
726727
+
Arg
TCG
-
¡û
>C161055895
CP013352
Bacillota
Clostridium butyricum JKY6D1 [CP013352, CP013353]
414386
414462
+
Arg
TCG
-
¡û
>C161076413
CP014704
Bacillota
Clostridium butyricum TOA [CP014704, CP014705]
399073
399149
+
Arg
TCG
-
¡û
>C161104294
FR745875
Bacillota
Clostridium botulinum B str. Eklund 17B [NRP] [FR745875]
433433
433509
+
Arg
TCG
-
¡û
>W1610020624
ASPQ01000237
Bacillota
Clostridium butyricum CWBI1009 [ASPQ]
61
137
+
Arg
TCG
[ENA]
¡û
>W1610112598
CZLD01000015
Bacillota
Clostridium neonatale [CZLD]
22775
22699
-
Arg
TCG
[ENA]
¡û
>W1610602155
LFPB01000004
Bacillota
Clostridium botulinum [LFPB]
169151
169227
+
Arg
TCG
[ENA]
¡û
>W1610627688
LIDW01000056
Bacillota
Clostridium butyricum [LIDW]
19246
19170
-
Arg
TCG
[ENA]
¡û
>WENV082923
BAAW01012387
Gut microbiome of Human (healthy human sample F1-U, Infant, Feale)
703
625
-
Arg
TCG
[ENA]
>W1710115302
CZLD01000015
Bacillota
Clostridium neonatale [CZLD]
22775
22699
-
Arg
TCG
[ENA]
¡û
>W1710558936
FOMG01000003
Bacillota
Clostridium uliginosum [FOMG]
234751
234827
+
Arg
TCG
[ENA]
¡û
>W1710723671
LFPB01000004
Bacillota
Clostridium botulinum [LFPB]
169151
169227
+
Arg
TCG
[ENA]
¡û
>W1710758815
LIDW01000056
Bacillota
Clostridium butyricum [LIDW]
19246
19170
-
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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