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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147742 (73 seq.)
>W1710777598
LJBS01000035
Bacillota
Pediococcus acidilactici [LJBS]
96
169
+
Thr
GGT
[ENA]
¡û
>W1710915747
LNUM01000003
Bacillota
Pediococcus acidilactici [LNUM]
600
673
+
Thr
GGT
[ENA]
¡û
>W1711005317
LQNM01000017
Bacillota
Pediococcus pentosaceus [LQNM]
198
271
+
Thr
GGT
[ENA]
¡û
>W1711005588
LQNQ01000056
Bacillota
Pediococcus acidilactici [LQNQ]
188065
187992
-
Thr
GGT
[ENA]
¡û
>W1711005650
LQNR01000131
Bacillota
Pediococcus acidilactici [LQNR]
5828
5755
-
Thr
GGT
[ENA]
¡û
>W1711025289
LRBW01000072
Bacillota
Pediococcus acidilactici [LRBW]
73799
73726
-
Thr
GGT
[ENA]
¡û
>W1711068950
LSFE01000010
Bacillota
Pediococcus pentosaceus [LSFE]
215
288
+
Thr
GGT
[ENA]
¡û
>W1711166869
LVVN01000013
Bacillota
Weissella halotolerans [LVVN]
686
759
+
Thr
GGT
[ENA]
¡û
>W1711258412
LYUJ01000016
Bacillota
Pediococcus acidilactici [LYUJ]
524
597
+
Thr
GGT
[ENA]
¡û
>W1711585771
MOAB01000001
Bacillota
Pediococcus acidilactici [MOAB]
1343376
1343303
-
Thr
GGT
[ENA]
¡û
>C171036774
CP015206
Bacillota
Pediococcus acidilactici ZPA017 [CP015206]
1628598
1628671
+
Thr
GGT
-
¡û
>C171083256
CP018763
Bacillota
Pediococcus acidilactici BCC1 [CP018763]
218218
218291
+
Thr
GGT
-
¡û
>C171119470
CP021474
Bacillota
Pediococcus pentosaceus SRCM100892 [CP021474]
1514232
1514159
-
Thr
GGT
-
¡û
>C171119562
CP021484
Bacillota
Pediococcus acidilactici SRCM100424 [CP021484]
219326
219399
+
Thr
GGT
-
¡û
>C171119619
CP021487
Bacillota
Pediococcus acidilactici SRCM100313 [CP021487]
219320
219393
+
Thr
GGT
-
¡û
>C171120422
CP021529
Bacillota
Pediococcus acidilactici SRCM101189 [CP021529]
219326
219399
+
Thr
GGT
-
¡û
>C171126488
CP021927
Bacillota
Pediococcus pentosaceus SRCM100194 [CP021927]
1490721
1490648
-
Thr
GGT
-
¡û
>W131146255
AQGT01000017
Bacillota
Pediococcus acidilactici D3 [AQGT]
158248
158175
-
Thr
GGT
[ENA]
¡û
>W131239185
BANK01000017
Bacillota
Pediococcus acidilactici NGRI 0510Q [BANK]
35499
35426
-
Thr
GGT
[ENA]
¡û
>C017403
CP000422
Bacillota
Pediococcus pentosaceus ATCC 25745 [CP000422]
282936
283009
+
Thr
GGT
[Ensembl]
¡û
>WENV180334451
OBLF01013654
[OBLF] metagenome; feces
172
245
+
Thr
GGT
[ENA]
¢þ
>WENV180349340
OBLO01035610
[OBLO] metagenome; feces
665
738
+
Thr
GGT
[ENA]
¢þ
>W141097308
AVGK01000002
Bacillota
Clostridioides difficile CD9 [AVGK]
5800
5873
+
Thr
GGT
[ENA]
¡û
>W141241949
CAHU01000001
Bacillota
Pediococcus pentosaceus IE-3 [CAHU]
100
173
+
Thr
GGT
[ENA]
¡û
>W141280142
JAGU01000001
Bacillota
Pediococcus acidilactici AGR20 [JAGU]
830641
830568
-
Thr
GGT
[ENA]
¡û
>WENV183238389
OLQY01036671
[OLQY] human gut metagenome; faeces
380
453
+
Thr
GGT
[ENA]
¢þ
>WENV183762388
PPYE01275672
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
17440
17367
-
Thr
GGT
[ENA]
¢þ
>WENV183790274
PPYF01411160
[PPYF] human gut metagenome; stool from patient with Crohn's disease
179
252
+
Thr
GGT
[ENA]
¢þ
>WENV183792307
PPYF01458421
[PPYF] human gut metagenome; stool from patient with Crohn's disease
6751
6678
-
Thr
GGT
[ENA]
¢þ
>W141402929
JDVW01000004
Bacillota
Pediococcus pentosaceus CGMCC 7049 [JDVW]
118025
118098
+
Thr
GGT
[ENA]
¡û
>WENV170659179
JXWR01001170
[JXWR] soil metagenome; rice field; ambient CO2
122
195
+
Thr
GGT
[ENA]
¢þ
>C181042764
CP020018
Bacillota
Pediococcus pentosaceus KCCM 40703 [CP020018]
1312833
1312906
+
Thr
GGT
-
¡û
>W09101478
AAEV01000015
Bacillota
Pediococcus pentosaceus ATCC 25745 [AAEV]
37161
37088
-
Thr
GGT
[ENA]
¡û
>C191023214
CP023008
Bacillota
Pediococcus pentosaceus SS1-3 [CP023008]
255823
255896
+
Thr
GGT
-
¡û
>C191035320
CP025471
Bacillota
Pediococcus acidilactici PB22 [CP025471]
233695
233768
+
Thr
GGT
-
¡û
>C191106203
CP033438
Bacillota
Pediococcus acidilactici ATCC 8042 [CP033438]
1863238
1863165
-
Thr
GGT
-
¡û
>C191135559
CP035151
Bacillota
Pediococcus acidilactici SRCM103367 [CP035151]
203920
203993
+
Thr
GGT
-
¡û
>C191135615
CP035154
Bacillota
Pediococcus acidilactici SRCM103387 [CP035154]
219073
219146
+
Thr
GGT
-
¡û
>C191137806
CP035266
Bacillota
Pediococcus acidilactici SRCM103444 [CP035266]
1741188
1741115
-
Thr
GGT
-
¡û
>W1910181674
BJMF01000007
Bacillota
Pediococcus acidilactici NBRC 12231 [BJMF]
95799
95726
-
Thr
GGT
[ENA]
¡û
>W1910373946
FUHV01000013
Bacillota
Pediococcus acidilactici S7 [FUHV]
387
460
+
Thr
GGT
[ENA]
¡û
>C141009476
CP006854
Bacillota
Pediococcus pentosaceus SL4 [CP006854]
293279
293352
+
Thr
GGT
[Ensembl]
¡û
>W1911631298
PUFB01000019
Bacillota
Pediococcus pentosaceus ATCC 33316 [PUFB]
302075
302002
-
Thr
GGT
[ENA]
¡û
>W1911696878
QNGC01000025
Bacillota
Pediococcus acidilactici GS1 [QNGC]
635
708
+
Thr
GGT
[ENA]
¡û
>W1911798506
QYRQ01000039
Bacillota
Pediococcus acidilactici WT [QYRQ]
662
735
+
Thr
GGT
[ENA]
¡û
>W1810000843
BEWQ01000006
Bacillota
Pediococcus pentosaceus NBRC 3182 [BEWQ]
75
148
+
Thr
GGT
[ENA]
¡û
>W1810049843
PCYQ01000005
Bacillota
Pediococcus acidilactici UMNPBX20 [PCYQ]
129174
129101
-
Thr
GGT
[ENA]
¡û
>W10105138
ACXB01000013
Bacillota
Pediococcus acidilactici 7_4 [ACXB]
174006
173933
-
Thr
GGT
[ENA]
¡û
>W10127377
AEEG01000009
Bacillota
Pediococcus acidilactici DSM 20284 [AEEG]
302483
302410
-
Thr
GGT
[ENA]
¡û
>W11107458
ACXB01000013
Bacillota
Pediococcus acidilactici 7_4 [ACXB]
174006
173933
-
Thr
GGT
[ENA]
¡û
>W11134865
AEEG01000009
Bacillota
Pediococcus acidilactici DSM 20284 [AEEG]
302483
302410
-
Thr
GGT
[ENA]
¡û
>C161092336
CP015918
Bacillota
Pediococcus pentosaceus wikim20 [CP015918]
1722991
1722918
-
Thr
GGT
[Ensembl]
¡û
>W121011462
AGKB01000005
Bacillota
Pediococcus acidilactici MA18/5M [AGKB]
52935
53008
+
Thr
GGT
[ENA]
¡û
>W1610057762
BBZC01000006
Bacillota
Pediococcus pentosaceus [BBZC]
865
938
+
Thr
GGT
[ENA]
¡û
>W1610527749
JQAQ01000004
Bacillota
Pediococcus acidilactici [JQAQ]
310
383
+
Thr
GGT
[ENA]
¡û
>W1610528424
JQBF01000010
Bacillota
Pediococcus pentosaceus [JQBF]
34261
34188
-
Thr
GGT
[ENA]
¡û
>W1610529225
JQBX01000012
Bacillota
Pediococcus stilesii [JQBX]
73055
72982
-
Thr
GGT
[ENA]
¡û
>W1610529455
JQCC01000002
Bacillota
Pediococcus acidilactici [JQCC]
325
398
+
Thr
GGT
[ENA]
¡û
>W1610641784
LJBS01000035
Bacillota
Pediococcus acidilactici [LJBS]
96
169
+
Thr
GGT
[ENA]
¡û
>W1610650064
LJIU01000002
Bacillota
Pediococcus pentosaceus wikim20 [LJIU]
75
148
+
Thr
GGT
[ENA]
¡û
>W1610773986
LNUM01000003
Bacillota
Pediococcus acidilactici [LNUM]
600
673
+
Thr
GGT
[ENA]
¡û
>W1610855967
LQNM01000017
Bacillota
Pediococcus pentosaceus [LQNM]
198
271
+
Thr
GGT
[ENA]
¡û
>W1610856238
LQNQ01000056
Bacillota
Pediococcus acidilactici [LQNQ]
188065
187992
-
Thr
GGT
[ENA]
¡û
>W1610856300
LQNR01000131
Bacillota
Pediococcus acidilactici [LQNR]
5828
5755
-
Thr
GGT
[ENA]
¡û
>W1610873401
LRBW01000072
Bacillota
Pediococcus acidilactici [LRBW]
73799
73726
-
Thr
GGT
[ENA]
¡û
>W1610909520
LSFE01000010
Bacillota
Pediococcus pentosaceus [LSFE]
215
288
+
Thr
GGT
[ENA]
¡û
>W1610977409
LVVN01000013
Bacillota
Weissella halotolerans [LVVN]
686
759
+
Thr
GGT
[ENA]
¡û
>W1611020884
LYUJ01000016
Bacillota
Pediococcus acidilactici [LYUJ]
524
597
+
Thr
GGT
[ENA]
¡û
>W1710054461
BBZC01000006
Bacillota
Pediococcus pentosaceus [BBZC]
865
938
+
Thr
GGT
[ENA]
¡û
>W1710629380
JQAQ01000004
Bacillota
Pediococcus acidilactici [JQAQ]
310
383
+
Thr
GGT
[ENA]
¡û
>W1710630014
JQBF01000010
Bacillota
Pediococcus pentosaceus [JQBF]
34261
34188
-
Thr
GGT
[ENA]
¡û
>W1710630815
JQBX01000012
Bacillota
Pediococcus stilesii [JQBX]
73055
72982
-
Thr
GGT
[ENA]
¡û
>W1710631045
JQCC01000002
Bacillota
Pediococcus acidilactici [JQCC]
325
398
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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