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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147749 (85 seq.)
>W1711190989
LWSH01000001
Bacillota
Lactobacillus acidophilus [LWSH]
47440
47513
+
Pro
CGG
[ENA]
¡û
>W1711577133
MNPO01000002
Bacillota
Lactobacillus acidophilus [MNPO]
212403
212476
+
Pro
CGG
[ENA]
¡û
>W1712041324
NFKZ01000003
Bacillota
Lactobacillus gallinarum [NFKZ]
135069
134994
-
Pro
CGG
[ENA]
¡û
>W1712042236
NFLP01000004
Bacillota
Lactobacillus gallinarum [NFLP]
89550
89475
-
Pro
CGG
[ENA]
¡û
>W1712042404
NFLS01000004
Bacillota
Lactobacillus gallinarum [NFLS]
240
315
+
Pro
CGG
[ENA]
¡û
>W1712042795
NFLZ01000004
Bacillota
Lactobacillus gallinarum [NFLZ]
230
305
+
Pro
CGG
[ENA]
¡û
>C171108169
CP020457
Bacillota
Lactobacillus amylolyticus L6 [CP020457]
252472
252546
+
Pro
CGG
-
¡û
>W131252089
CBLP010000004
Bacillota
Lactobacillus acidophilus CIRM-BIA 442 [CBLP]
154255
154328
+
Pro
CGG
[ENA]
¡û
>W131252147
CBLQ010000019
Bacillota
Lactobacillus acidophilus CIP 76.13 [CBLQ]
68123
68196
+
Pro
CGG
[ENA]
¡û
>W131252199
CBLR010000002
Bacillota
Lactobacillus acidophilus CIRM-BIA 445 [CBLR]
67955
68028
+
Pro
CGG
[ENA]
¡û
>W131252283
CBLS010000040
Bacillota
Lactobacillus acidophilus DSM 9126 [CBLS]
68054
68127
+
Pro
CGG
[ENA]
¡û
>W131252338
CBLT010000021
Bacillota
Lactobacillus acidophilus DSM 20242 [CBLT]
112610
112683
+
Pro
CGG
[ENA]
¡û
>C011153
CP000033
Bacillota
Lactobacillus acidophilus NCFM [CP000033]
275660
275733
+
Pro
CGG
[Ensembl]
¡û
>WENV180339238
OBLI01003028
[OBLI] pig gut metagenome; faeces
64
139
+
Pro
CGG
[ENA]
¢þ
>W141195334
AYUA01000114
Bacillota
Lactobacillus acidophilus CFH [AYUA]
309
382
+
Pro
CGG
[ENA]
¡û
>W141195378
AYUB01000044
Bacillota
Lactobacillus acidophilus CFH [AYUB]
3720
3793
+
Pro
CGG
[ENA]
¡û
>W141227498
BALB01000002
Bacillota
Lactobacillus gallinarum JCM 2011 [BALB]
126979
126904
-
Pro
CGG
[ENA]
¡û
>W141228111
BALR01000003
Bacillota
Lactobacillus acidophilus JCM 1132 [BALR]
68208
68135
-
Pro
CGG
[ENA]
¡û
>W141228251
BALU01000004
Bacillota
Lactobacillus kitasatonis JCM 1039 [BALU]
67758
67683
-
Pro
CGG
[ENA]
¡û
>W141228439
BALY01000003
Bacillota
Lactobacillus hamsteri JCM 6256 [BALY]
95041
94966
-
Pro
CGG
[ENA]
¡û
>WENV183149997
OLOP01000006
[OLOP] human gut metagenome; faeces
67014
67089
+
Pro
CGG
[ENA]
¢þ
>WENV183182217
OLPK01000067
[OLPK] human gut metagenome; faeces
86
161
+
Pro
CGG
[ENA]
¢þ
>WENV183237200
OLQY01000102
[OLQY] human gut metagenome; faeces
39952
39877
-
Pro
CGG
[ENA]
¢þ
>WENV183263409
OLRR01000219
[OLRR] human gut metagenome; faeces
35212
35137
-
Pro
CGG
[ENA]
¢þ
>WENV183291113
OLSI01000219
[OLSI] human gut metagenome; faeces
49001
48928
-
Pro
CGG
[ENA]
¢þ
>WENV183548091
OOAW01001023
[OOAW] human gut metagenome; human gut
4122
4195
+
Pro
CGG
[ENA]
¢þ
>WENV183606008
OODN01000246
[OODN] human gut metagenome; human gut
112
187
+
Pro
CGG
[ENA]
¢þ
>WENV183771787
PPYF01000156
[PPYF] human gut metagenome; stool from patient with Crohn's disease
16433
16506
+
Pro
CGG
[ENA]
¢þ
>WENV183772522
PPYF01017198
[PPYF] human gut metagenome; stool from patient with Crohn's disease
26475
26548
+
Pro
CGG
[ENA]
¢þ
>C181012348
CP012389
Bacillota
Lactobacillus amylovorus JBD401 [CP012389]
219454
219529
+
Pro
CGG
-
¡û
>C181022934
CP017062
Bacillota
Lactobacillus acidophilus LA1 [CP017062]
275652
275725
+
Pro
CGG
-
¡û
>C181027667
CP017706
Bacillota
Lactobacillus amylovorus DSM 20531 [CP017706]
836399
836324
-
Pro
CGG
-
¡û
>C181045455
CP020620
Bacillota
Lactobacillus acidophilus DSM 20079 [CP020620]
1918633
1918706
+
Pro
CGG
-
¡û
>C181065317
CP022449
Bacillota
Lactobacillus acidophilus ATCC 53544 [CP022449]
589767
589840
+
Pro
CGG
-
¡û
>C191030173
CP025200
Bacillota
Lactobacillus acidophilus YT1 [CP025200]
304859
304932
+
Pro
CGG
-
¡û
>C191081363
CP031835
Bacillota
Lactobacillus amylolyticus L5 [CP031835]
254785
254859
+
Pro
CGG
-
¡û
>W09124238
ACHN01000037
Bacillota
Lactobacillus acidophilus ATCC 4796 [ACHN]
16361
16434
+
Pro
CGG
[ENA]
¡û
>W1910923188
NIGU01000002
Bacillota
Lactobacillus acidophilus LMG P-21904 [NIGU]
152871
152944
+
Pro
CGG
[ENA]
¡û
>W1911423094
NXEY01000003
Bacillota
Lactobacillus acidophilus P2 [NXEY]
78822
78749
-
Pro
CGG
[ENA]
¡û
>W1911569371
PCYT01000001
Bacillota
Lactobacillus sp. UMNPBX17 [PCYT]
268
343
+
Pro
CGG
[ENA]
¡û
>W1911569546
PCYW01000005
Bacillota
Lactobacillus sp. UMNPBX14 [PCYW]
53881
53806
-
Pro
CGG
[ENA]
¡û
>W1911569944
PCZD01000005
Bacillota
Lactobacillus sp. UMNPBX6 [PCZD]
53881
53806
-
Pro
CGG
[ENA]
¡û
>W1911570101
PCZF01000059
Bacillota
Lactobacillus sp. UMNPBX4 [PCZF]
259
184
-
Pro
CGG
[ENA]
¡û
>W1911597884
PNRB01000006
Bacillota
Lactobacillus amylovorus PMRA1 [PNRB]
24853
24778
-
Pro
CGG
[ENA]
¡û
>W1911631541
PUFF01000051
Bacillota
Lactobacillus amylolyticus DSM 11664 [PUFF]
108347
108273
-
Pro
CGG
[ENA]
¡û
>W1810473373
QAHL01000002
Bacillota
Lactobacillus acidophilus DS20_1 [QAHL]
77966
77893
-
Pro
CGG
[ENA]
¡û
>W1810473433
QAHM01000002
Bacillota
Lactobacillus acidophilus DS13_1B [QAHM]
77763
77690
-
Pro
CGG
[ENA]
¡û
>W1810473491
QAHN01000002
Bacillota
Lactobacillus acidophilus DS9_1A [QAHN]
78589
78516
-
Pro
CGG
[ENA]
¡û
>W1810473550
QAHO01000002
Bacillota
Lactobacillus acidophilus DS8_1A [QAHO]
152962
153035
+
Pro
CGG
[ENA]
¡û
>W1810473610
QAHP01000002
Bacillota
Lactobacillus acidophilus DS5_1A [QAHP]
152962
153035
+
Pro
CGG
[ENA]
¡û
>W1810473679
QAHQ01000004
Bacillota
Lactobacillus acidophilus DS2_1A [QAHQ]
37461
37534
+
Pro
CGG
[ENA]
¡û
>W1810473731
QAHR01000003
Bacillota
Lactobacillus acidophilus DS13_1A [QAHR]
77689
77616
-
Pro
CGG
[ENA]
¡û
>W1810473788
QAHS01000002
Bacillota
Lactobacillus acidophilus DS11_1A [QAHS]
152962
153035
+
Pro
CGG
[ENA]
¡û
>W1810473849
QAHT01000002
Bacillota
Lactobacillus acidophilus DS1_1A [QAHT]
78209
78136
-
Pro
CGG
[ENA]
¡û
>W1810489260
QAZX01000002
Bacillota
Lactobacillus acidophilus DS24_1 [QAZX]
152962
153035
+
Pro
CGG
[ENA]
¡û
>W1810489320
QAZY01000002
Bacillota
Lactobacillus acidophilus DS10_1A [QAZY]
106062
106135
+
Pro
CGG
[ENA]
¡û
>W1810815301
QSAX01000001
Bacillota
Lactobacillus amylovorus AF08-3 [QSAX]
51881
51806
-
Pro
CGG
[ENA]
¡û
>C151068713
CP010432
Bacillota
Lactobacillus acidophilus FSI4 [CP010432]
275959
276032
+
Pro
CGG
[Ensembl]
¡û
>W1510072875
CDLD01000004
Bacillota
Lactobacillus sp. OTU4228 sp. [CDLD]
71383
71458
+
Pro
CGG
[ENA]
¡û
>W10116627
ADNY01000029
Bacillota
Lactobacillus amylolyticus DSM 11664 [ADNY]
60627
60553
-
Pro
CGG
[ENA]
¡û
>C11111911
CP002559
Bacillota
Lactobacillus amylovorus 30SC [CP002559]
288157
288232
+
Pro
CGG
[Ensembl]
¡û
>C11112006
CP002609
Bacillota
Lactobacillus amylovorus GRL1118 [CP002609]
280285
280360
+
Pro
CGG
[Ensembl]
¡û
>C11112065
CP002338
Bacillota
Lactobacillus amylovorus GRL 1112 [CP002338]
303679
303754
+
Pro
CGG
[Ensembl]
¡û
>W1511356881
JRUT01000004
Bacillota
Lactobacillus acidophilus ATCC 4356 [JRUT]
109280
109353
+
Pro
CGG
[ENA]
¡û
>W11121296
ADNY01000029
Bacillota
Lactobacillus amylolyticus DSM 11664 [ADNY]
60627
60553
-
Pro
CGG
[ENA]
¡û
>W1511580671
LARO01000023
Bacillota
Lactobacillus sp. N54.MGS-719 [LARO]
4757
4682
-
Pro
CGG
[ENA]
¡û
>W1610032813
AZCM01000009
Bacillota
Lactobacillus amylovorus DSM 20531 [AZCM]
32708
32633
-
Pro
CGG
[ENA]
¡û
>W1610033157
AZCS01000003
Bacillota
Lactobacillus acidophilus DSM 20079 = JCM 1132 = NBRC 13951 [AZCS]
68303
68230
-
Pro
CGG
[ENA]
¡û
>W1610035356
AZEL01000011
Bacillota
Lactobacillus gallinarum DSM 10532 = JCM 2011 [AZEL]
87
162
+
Pro
CGG
[ENA]
¡û
>W1610035573
AZEP01000001
Bacillota
Lactobacillus amylolyticus DSM 11664 [AZEP]
55750
55824
+
Pro
CGG
[ENA]
¡û
>W1610037104
AZFU01000022
Bacillota
Lactobacillus kitasatonis DSM 16761 = JCM 1039 [AZFU]
67824
67749
-
Pro
CGG
[ENA]
¡û
>W1610037825
AZGI01000005
Bacillota
Lactobacillus hamsteri DSM 5661 = JCM 6256 [AZGI]
95103
95028
-
Pro
CGG
[ENA]
¡û
>W1610073125
BCVR01000003
Bacillota
Lactobacillus acidophilus DSM 20079 = JCM 1132 = NBRC 13951 [BCVR]
69221
69148
-
Pro
CGG
[ENA]
¡û
>C131015848
CP005926
Bacillota
Lactobacillus acidophilus La-14 [CP005926]
275658
275731
+
Pro
CGG
[Ensembl]
¡û
>W1610528877
JQBQ01000007
Bacillota
Lactobacillus amylovorus DSM 16698 [JQBQ]
14603
14678
+
Pro
CGG
[ENA]
¡û
>W1610992592
LWSH01000001
Bacillota
Lactobacillus acidophilus [LWSH]
47440
47513
+
Pro
CGG
[ENA]
¡û
>W1710030144
AZCM01000009
Bacillota
Lactobacillus amylovorus DSM 20531 [AZCM]
32708
32633
-
Pro
CGG
[ENA]
¡û
>W1710030429
AZCS01000003
Bacillota
Lactobacillus acidophilus DSM 20079 = JCM 1132 = NBRC 13951 [AZCS]
68303
68230
-
Pro
CGG
[ENA]
¡û
>W1710032395
AZEL01000011
Bacillota
Lactobacillus gallinarum DSM 10532 = JCM 2011 [AZEL]
87
162
+
Pro
CGG
[ENA]
¡û
>W1710032612
AZEP01000001
Bacillota
Lactobacillus amylolyticus DSM 11664 [AZEP]
55750
55824
+
Pro
CGG
[ENA]
¡û
>W1710034143
AZFU01000022
Bacillota
Lactobacillus kitasatonis DSM 16761 = JCM 1039 [AZFU]
67824
67749
-
Pro
CGG
[ENA]
¡û
>W1710034864
AZGI01000005
Bacillota
Lactobacillus hamsteri DSM 5661 = JCM 6256 [AZGI]
95103
95028
-
Pro
CGG
[ENA]
¡û
>W1710070243
BCVR01000003
Bacillota
Lactobacillus acidophilus DSM 20079 = JCM 1132 = NBRC 13951 [BCVR]
69221
69148
-
Pro
CGG
[ENA]
¡û
>W1710082783
BDHM01000005
Bacillota
Lactobacillus acidophilus [BDHM]
78545
78472
-
Pro
CGG
[ENA]
¡û
>W1710630467
JQBQ01000007
Bacillota
Lactobacillus amylovorus DSM 16698 [JQBQ]
14603
14678
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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